RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 FAM19A4Q96LR4 140 aa9.1□□□□□ -0.95
PTPRF-215ENST00000496447 H3BNG1 76 aa9.1□□□□□ -0.95
PTPRF-215ENST00000496447 VPREB1P12018 145 aa9.09□□□□□ -0.95
PTPRF-215ENST00000496447 PCOTHQ58A44 107 aa9.08□□□□□ -0.96
PTPRF-215ENST00000496447 LINC00315P59091 139 aa9.08□□□□□ -0.96
PTPRF-215ENST00000496447 IGHV3OR16-9A0A0B4J2B5 98 aa9.08□□□□□ -0.96
PTPRF-215ENST00000496447 FASNP49327 2511 aaKnown RBP9.07□□□□□ -0.96
PTPRF-215ENST00000496447 IGLV5-39A0A0G2JS06 123 aa9.06□□□□□ -0.96
PTPRF-215ENST00000496447 SPINK1P00995 79 aa9.06□□□□□ -0.96
PTPRF-215ENST00000496447 FAM229AH3BQW9 127 aa9.06□□□□□ -0.96
PTPRF-215ENST00000496447 LINC00167Q96N53 147 aa9.06□□□□□ -0.96
PTPRF-215ENST00000496447 NBDYA0A0U1RRE5 68 aa9.05□□□□□ -0.96
PTPRF-215ENST00000496447 SERTAD4-AS1Q5TG53 156 aa9.05□□□□□ -0.96
PTPRF-215ENST00000496447 C6orf48Q9UBA6 75 aa9.05□□□□□ -0.96
PTPRF-215ENST00000496447 HCG22E2RYF7 251 aa9.05□□□□□ -0.96
PTPRF-215ENST00000496447 H0Y9P7 68 aa9.05□□□□□ -0.96
PTPRF-215ENST00000496447 SPACA4Q8TDM5 124 aa9.05□□□□□ -0.96
PTPRF-215ENST00000496447 RTL8CO15255 209 aa9.04□□□□□ -0.96
PTPRF-215ENST00000496447 WIPF1O43516 503 aa9.04□□□□□ -0.96
PTPRF-215ENST00000496447 MOBPQ13875 183 aa9.03□□□□□ -0.96
PTPRF-215ENST00000496447 WWC2-AS2Q96NR7 200 aa9.03□□□□□ -0.96
PTPRF-215ENST00000496447 C16orf90A8MZG2 172 aa9.03□□□□□ -0.96
PTPRF-215ENST00000496447 KIAA0087Q14695 138 aa9.03□□□□□ -0.96
PTPRF-215ENST00000496447 PKD1L2Q7Z442 2459 aa9.03□□□□□ -0.96
PTPRF-215ENST00000496447 Q8NAQ8 132 aa9.02□□□□□ -0.97
PTPRF-215ENST00000496447 MTORP42345 2549 aa9.02□□□□□ -0.97
PTPRF-215ENST00000496447 CD164Q04900 197 aa9.01□□□□□ -0.97
PTPRF-215ENST00000496447 LINC00588Q9Y4M8 146 aa9.01□□□□□ -0.97
PTPRF-215ENST00000496447 FAM218AQ96MZ4 157 aa9□□□□□ -0.97
PTPRF-215ENST00000496447 PTPRBP23467 1997 aa9□□□□□ -0.97
PTPRF-215ENST00000496447 PHF5AQ7RTV0 110 aaKnown RBP9□□□□□ -0.97
PTPRF-215ENST00000496447 IGKV2D-30A0A075B6S6 120 aa8.99□□□□□ -0.97
PTPRF-215ENST00000496447 IGKV2-30P06310 120 aa8.99□□□□□ -0.97
PTPRF-215ENST00000496447 LINC00336Q6ZUF6 198 aa8.98□□□□□ -0.97
PTPRF-215ENST00000496447 SMIM29Q86T20 159 aa8.98□□□□□ -0.97
PTPRF-215ENST00000496447 Q6ZRP5 223 aa8.98□□□□□ -0.97
PTPRF-215ENST00000496447 LOC110117498A0A087WWA1 95 aa8.97□□□□□ -0.97
PTPRF-215ENST00000496447 SPATA3Q8NHX4 192 aa8.97□□□□□ -0.97
PTPRF-215ENST00000496447 ERC2-IT1O76042 136 aa8.97□□□□□ -0.97
PTPRF-215ENST00000496447 COL27A1Q8IZC6 1860 aaPredicted RBP8.97□□□□□ -0.97
PTPRF-215ENST00000496447 IGLV5-45A0A087WSX0 123 aa8.97□□□□□ -0.97
PTPRF-215ENST00000496447 Q9UF83 564 aa8.96□□□□□ -0.97
PTPRF-215ENST00000496447 Q6ZQT0 140 aa8.95□□□□□ -0.98
PTPRF-215ENST00000496447 CHTF8P0CG12 524 aa8.95□□□□□ -0.98
PTPRF-215ENST00000496447 A0A1B0GW54 56 aa8.95□□□□□ -0.98
PTPRF-215ENST00000496447 POLQO75417 2590 aa8.94□□□□□ -0.98
PTPRF-215ENST00000496447 TYMSOSQ8TAI1 123 aa8.94□□□□□ -0.98
PTPRF-215ENST00000496447 MUC4Q99102 2169 aa8.94□□□□□ -0.98
PTPRF-215ENST00000496447 ANKRD17O75179 2603 aaKnown RBP8.93□□□□□ -0.98
PTPRF-215ENST00000496447 C1orf64Q8NEQ6 169 aa8.93□□□□□ -0.98
PTPRF-215ENST00000496447 TM2D3Q9BRN9 247 aa8.93□□□□□ -0.98
PTPRF-215ENST00000496447 EPM2AB3EWF7 344 aa8.93□□□□□ -0.98
PTPRF-215ENST00000496447 H3BPC8 53 aa8.93□□□□□ -0.98
PTPRF-215ENST00000496447 ELOF1P60002 83 aaKnown RBP8.92□□□□□ -0.98
PTPRF-215ENST00000496447 CENPFP49454 3210 aa8.92□□□□□ -0.98
PTPRF-215ENST00000496447 KLKP1Q107X0 134 aa8.92□□□□□ -0.98
PTPRF-215ENST00000496447 Q8NBF4 154 aa8.92□□□□□ -0.98
PTPRF-215ENST00000496447 Q6ZRX8 168 aa8.91□□□□□ -0.98
PTPRF-215ENST00000496447 ACANP16112 2415 aa8.91□□□□□ -0.98
PTPRF-215ENST00000496447 GVQW2A0A096LPI5 108 aaPredicted RBP8.91□□□□□ -0.98
PTPRF-215ENST00000496447 C7orf65Q6ZTY9 151 aa8.91□□□□□ -0.98
PTPRF-215ENST00000496447 SPAG11AQ6PDA7 123 aa8.9□□□□□ -0.98
PTPRF-215ENST00000496447 CYP4F30PQ9H0H9 118 aa8.9□□□□□ -0.98
PTPRF-215ENST00000496447 PLA2G1BP04054 148 aaKnown RBP8.9□□□□□ -0.98
PTPRF-215ENST00000496447 LITAFQ99732 161 aa8.9□□□□□ -0.98
PTPRF-215ENST00000496447 DNAH10OSP0CZ25 163 aa8.89□□□□□ -0.99
PTPRF-215ENST00000496447 J3QL48 77 aa8.88□□□□□ -0.99
PTPRF-215ENST00000496447 C8orf87E5RJ46 101 aa8.88□□□□□ -0.99
PTPRF-215ENST00000496447 LINC00476Q8WZB0 136 aa8.88□□□□□ -0.99
PTPRF-215ENST00000496447 K7EIL1 84 aa8.87□□□□□ -0.99
PTPRF-215ENST00000496447 TP53AIP1Q9HCN2 124 aa8.87□□□□□ -0.99
PTPRF-215ENST00000496447 A0A1B0GU69 56 aa8.87□□□□□ -0.99
PTPRF-215ENST00000496447 KLK9Q2XQG4 91 aa8.87□□□□□ -0.99
PTPRF-215ENST00000496447 KRTAP10-11P60412 298 aa8.87□□□□□ -0.99
PTPRF-215ENST00000496447 RPL37AP61513 92 aaKnown RBP8.86□□□□□ -0.99
PTPRF-215ENST00000496447 F8P00451 2351 aa8.85□□□□□ -0.99
PTPRF-215ENST00000496447 ST20-AS1Q8NBB2 130 aa8.85□□□□□ -0.99
PTPRF-215ENST00000496447 H7BZZ5 65 aa8.84□□□□□ -0.99
PTPRF-215ENST00000496447 LINC00313P59037 77 aa8.84□□□□□ -0.99
PTPRF-215ENST00000496447 KTN1-AS1Q86SY8 53 aa8.84□□□□□ -0.99
PTPRF-215ENST00000496447 A8MUN3 132 aa8.83□□□□□ -1
PTPRF-215ENST00000496447 EPG5Q9HCE0 2579 aa8.83□□□□□ -1
PTPRF-215ENST00000496447 ACYP2P14621 99 aa8.83□□□□□ -1
PTPRF-215ENST00000496447 PCSK5Q92824 1860 aa8.82□□□□□ -1
PTPRF-215ENST00000496447 CSNK1G2-AS1Q8NCQ2 148 aa8.81□□□□□ -1
PTPRF-215ENST00000496447 FAM168BA1KXE4 195 aa8.8□□□□□ -1
PTPRF-215ENST00000496447 A0A096LNT2 108 aa8.8□□□□□ -1
PTPRF-215ENST00000496447 ATP11AUNQ6ZP68 121 aa8.8□□□□□ -1
PTPRF-215ENST00000496447 C19orf73Q9NVV2 129 aa8.8□□□□□ -1
PTPRF-215ENST00000496447 PRR15Q8IV56 129 aa8.79□□□□□ -1
PTPRF-215ENST00000496447 Q96NJ1 140 aa8.79□□□□□ -1
PTPRF-215ENST00000496447 KRTAP10-3P60369 221 aa8.77□□□□□ -1.01
PTPRF-215ENST00000496447 LINC01600Q96MT4 127 aa8.77□□□□□ -1.01
PTPRF-215ENST00000496447 LCA10Q71F78 164 aa8.76□□□□□ -1.01
PTPRF-215ENST00000496447 TRAV22A0A0B4J277 110 aa8.74□□□□□ -1.01
PTPRF-215ENST00000496447 IGLV6-57P01721 117 aa8.73□□□□□ -1.01
PTPRF-215ENST00000496447 IGLV1-50A0A075B6I6 118 aa8.73□□□□□ -1.01
PTPRF-215ENST00000496447 LOC101927531A0A1B0GV80 90 aa8.72□□□□□ -1.01
PTPRF-215ENST00000496447 TRBV7-4A0A0J9YYF1 115 aa8.71□□□□□ -1.02
PTPRF-215ENST00000496447 FLNBO75369 2602 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms