RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 LINC00959A0A1B0GUT2 108 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 C3orf79P0CE67 100 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 HNRNPA3P51991 378 aaKnown RBP4.08□□□□□ -1.76
VIM-207ENST00000495528 SS18Q15532 418 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 RNF213Q63HN8 5207 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 PKHD1L1Q86WI1 4243 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 OR10D4PQ8NGN7 298 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 PACRGQ96M98 296 aaPredicted RBP4.08□□□□□ -1.76
VIM-207ENST00000495528 AMELXQ99217 191 aa4.08□□□□□ -1.76
VIM-207ENST00000495528 SYS1-DBNDD2H3BUS1 97 aa4.07□□□□□ -1.76
VIM-207ENST00000495528 CRPP02741 224 aa4.07□□□□□ -1.76
VIM-207ENST00000495528 CXCL6P80162 114 aa4.07□□□□□ -1.76
VIM-207ENST00000495528 COX6A2Q02221 97 aa4.07□□□□□ -1.76
VIM-207ENST00000495528 PMCHL2Q9BQD1 86 aa4.07□□□□□ -1.76
VIM-207ENST00000495528 C2orf88Q9BSF0 95 aa4.07□□□□□ -1.76
VIM-207ENST00000495528 CHTOPQ9Y3Y2 248 aaKnown RBP4.07□□□□□ -1.76
VIM-207ENST00000495528 IGKV2D-24A0A075B6R9 120 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 TRAV8-4A0A0B4J246 113 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 A0A0U1RRA0 63 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 CCL25O15444 150 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 KRTAP1-4P0C5Y4 121 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 XCL1P47992 114 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 UBE2D1P51668 147 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 RPL37AP61513 92 aaKnown RBP4.06□□□□□ -1.76
VIM-207ENST00000495528 MIAQ16674 131 aa4.06□□□□□ -1.76
VIM-207ENST00000495528 CHCHD10Q8WYQ3 142 aaPredicted RBP4.06□□□□□ -1.76
VIM-207ENST00000495528 GEMIN7Q9H840 131 aaKnown RBP4.06□□□□□ -1.76
VIM-207ENST00000495528 TRAV12-1A0A0B4J245 112 aa4.05□□□□□ -1.76
VIM-207ENST00000495528 MT1HL1P0DM35 61 aa4.05□□□□□ -1.76
VIM-207ENST00000495528 AKR1D1P51857 326 aa4.05□□□□□ -1.76
VIM-207ENST00000495528 C5orf38Q86SI9 138 aa4.05□□□□□ -1.76
VIM-207ENST00000495528 RMI2Q96E14 147 aa4.05□□□□□ -1.76
VIM-207ENST00000495528 MRPL35Q9NZE8 188 aaKnown RBP4.05□□□□□ -1.76
VIM-207ENST00000495528 IGLV4-69A0A075B6H9 119 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 TINCRA0A1B0GVN0 87 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 C11orf86A6NJI1 115 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 A8MU10 97 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 F8VRH5 84 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 DPM2O94777 84 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 SEC11AP67812 179 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 TMEM170BQ5T4T1 132 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 LINC01545Q5VT33 79 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 KRTAP26-1Q6PEX3 210 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 ATOH7Q8N100 152 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 CDKN2A-AS1Q9UH64 79 aa4.04□□□□□ -1.76
VIM-207ENST00000495528 IGHV3OR16-9A0A0B4J2B5 98 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 LOC105371267A0A1B0GV96 52 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 C20orf202A1L168 122 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 COX7A2LO14548 114 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 IGKCP01834 107 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 IGLC3P0DOY3 106 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 HERVK_113P63121 156 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 FAM19A3Q7Z5A8 133 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 LINC00469Q8N7U9 141 aa4.03□□□□□ -1.76
VIM-207ENST00000495528 LRP2P98164 4655 aa4.02□□□□□ -1.77
VIM-207ENST00000495528 IGHV3-64A0A075B6Q5 118 aa4.02□□□□□ -1.77
VIM-207ENST00000495528 PANO1I0J062 215 aa4.02□□□□□ -1.77
VIM-207ENST00000495528 SPINK8P0C7L1 97 aa4.02□□□□□ -1.77
VIM-207ENST00000495528 ZNF22P17026 224 aaPredicted RBP4.02□□□□□ -1.77
VIM-207ENST00000495528 PLNP26678 52 aa4.02□□□□□ -1.77
VIM-207ENST00000495528 JOSD1Q15040 202 aaPredicted RBP4.02□□□□□ -1.77
VIM-207ENST00000495528 TNXBP22105 4242 aa4.02□□□□□ -1.77
VIM-207ENST00000495528 H3BRM9 83 aa4.01□□□□□ -1.77
VIM-207ENST00000495528 MAJINQ3KP22 176 aa4.01□□□□□ -1.77
VIM-207ENST00000495528 Q6ZRU5 148 aa4.01□□□□□ -1.77
VIM-207ENST00000495528 C9orf163Q8N9P6 203 aa4.01□□□□□ -1.77
VIM-207ENST00000495528 LINC00526Q96FQ7 95 aa4.01□□□□□ -1.77
VIM-207ENST00000495528 TOMM7Q9P0U1 55 aa4.01□□□□□ -1.77
VIM-207ENST00000495528 TMEM223A0PJW6 202 aa4□□□□□ -1.77
VIM-207ENST00000495528 APOMO95445 188 aa4□□□□□ -1.77
VIM-207ENST00000495528 C6orf226Q5I0X4 101 aa4□□□□□ -1.77
VIM-207ENST00000495528 PYY3Q5JQD4 70 aa4□□□□□ -1.77
VIM-207ENST00000495528 LCE3EQ5T5B0 92 aa4□□□□□ -1.77
VIM-207ENST00000495528 SDIM1Q6ZPB5 146 aa4□□□□□ -1.77
VIM-207ENST00000495528 ORAOV1Q8WV07 137 aa4□□□□□ -1.77
VIM-207ENST00000495528 IGHV1-58A0A0C4DH39 117 aa3.99□□□□□ -1.77
VIM-207ENST00000495528 HERVK_113P61574 105 aa3.99□□□□□ -1.77
VIM-207ENST00000495528 LINC01561Q8N1V8 128 aa3.99□□□□□ -1.77
VIM-207ENST00000495528 HSBP1L1C9JCN9 74 aa3.98□□□□□ -1.77
VIM-207ENST00000495528 LEPROTO15243 131 aa3.98□□□□□ -1.77
VIM-207ENST00000495528 KIAA0087Q14695 138 aa3.98□□□□□ -1.77
VIM-207ENST00000495528 C15orf56Q8N910 161 aa3.98□□□□□ -1.77
VIM-207ENST00000495528 COX7B2Q8TF08 81 aa3.98□□□□□ -1.77
VIM-207ENST00000495528 IGKV2D-26A0A0A0MRZ7 120 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 E9PLD3 99 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 J3QQQ9 107 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 CHTF8P0CG12 524 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 LGALS3P17931 250 aaKnown RBP3.97□□□□□ -1.77
VIM-207ENST00000495528 NMUP48645 174 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 CKS1BP61024 79 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 SPAG11BQ08648 103 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 CIRBPQ14011 172 aaKnown RBP3.97□□□□□ -1.77
VIM-207ENST00000495528 SPATA45Q537H7 98 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 C2orf82Q6UX34 121 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 UNQ6190/PRO20217Q6UXQ8 127 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 PLEKHB2Q96CS7 222 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 DPH3Q96FX2 82 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 ZNF625Q96I27 306 aaPredicted RBP3.97□□□□□ -1.77
VIM-207ENST00000495528 VAMP8Q9BV40 100 aa3.97□□□□□ -1.77
VIM-207ENST00000495528 GVQW2A0A096LPI5 108 aaPredicted RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms