RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 PCP4L1A6NKN8 68 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 M0R2N4 97 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 SNCGO76070 127 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 PFN2P35080 140 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 C2orf82Q6UX34 121 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 C2orf91Q6ZV80 131 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 C9orf163Q8N9P6 203 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 LINC00308Q8TCZ7 52 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 KRTAP1-5Q9BYS1 174 aa4.56□□□□□ -1.68
SYNE1-229ENST00000490866 A0A0B4J2C4 111 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 TRBV10-2A0A0K0K1G8 114 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 COX6CP09669 75 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 HIGD2BQ4VC39 106 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 BVES-AS1Q5T3Y7 98 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 LYRM7Q5U5X0 104 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 Q6ZRU5 148 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 MUSTN1Q8IVN3 82 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 MIR7-3HGQ8N6C7 128 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 RAB37Q96AX2 223 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 LITAFQ99732 161 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 TMEM126AQ9H061 195 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 SND1-IT1Q9HBX3 110 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 C6orf48Q9UBA6 75 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 PRO1854Q9UHT4 67 aa4.55□□□□□ -1.68
SYNE1-229ENST00000490866 STARD9Q9P2P6 4700 aa4.54□□□□□ -1.68
SYNE1-229ENST00000490866 PLECQ15149 4684 aaKnown RBP4.54□□□□□ -1.68
SYNE1-229ENST00000490866 C16orf90A8MZG2 172 aa4.54□□□□□ -1.68
SYNE1-229ENST00000490866 TTTY13Q9BZ97 58 aa4.54□□□□□ -1.68
SYNE1-229ENST00000490866 A0A1B0GWB2 263 aa4.53□□□□□ -1.68
SYNE1-229ENST00000490866 HINT1P49773 126 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-229ENST00000490866 VAMP3Q15836 100 aa4.53□□□□□ -1.68
SYNE1-229ENST00000490866 ADAMTSL4-AS1Q5T5F5 129 aa4.53□□□□□ -1.68
SYNE1-229ENST00000490866 A4D1N5 150 aa4.52□□□□□ -1.69
SYNE1-229ENST00000490866 C10orf25Q5T742 122 aa4.52□□□□□ -1.69
SYNE1-229ENST00000490866 LYSTQ99698 3801 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 IGLV5-52A0A0A0MRZ9 124 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 KRTAP23-1A1A580 65 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 H0YGX0 51 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 M0R378 163 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 S100A7L2Q5SY68 101 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 Q8N1X5 172 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 NKAPP1Q8N9T2 125 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 DPH3Q96FX2 82 aa4.51□□□□□ -1.69
SYNE1-229ENST00000490866 IGLV5-37A0A075B6J1 123 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 TRBV20-1A0A075B6N2 111 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 A0A0U1RRA0 63 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 H3BQ85 93 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 LECT2O14960 151 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 CFC1BP0CG36 223 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 CFC1P0CG37 223 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 RPL18AQ02543 176 aaKnown RBP4.5□□□□□ -1.69
SYNE1-229ENST00000490866 SDIM1Q6ZPB5 146 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 Q6ZRP5 223 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 LINC00526Q96FQ7 95 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 SNHG12Q9BXW3 62 aa4.5□□□□□ -1.69
SYNE1-229ENST00000490866 NHP2Q9NX24 153 aaKnown RBP4.5□□□□□ -1.69
SYNE1-229ENST00000490866 TRBV7-6A0A0J9YX20 115 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 RTL8CO15255 209 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 SLPIP03973 132 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 GAGE2BQ13066 116 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 BATFQ16520 125 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 GAGE2EQ4V326 116 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 C9orf116Q5BN46 136 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-229ENST00000490866 GAGE2DQ9UEU5 116 aa4.49□□□□□ -1.69
SYNE1-229ENST00000490866 VPS13DQ5THJ4 4388 aa4.48□□□□□ -1.69
SYNE1-229ENST00000490866 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-229ENST00000490866 RPL28P46779 137 aaKnown RBP4.48□□□□□ -1.69
SYNE1-229ENST00000490866 FXYD2P54710 66 aa4.48□□□□□ -1.69
SYNE1-229ENST00000490866 DAND5Q8N907 189 aa4.48□□□□□ -1.69
SYNE1-229ENST00000490866 OR13C6PQ8NH95 151 aa4.48□□□□□ -1.69
SYNE1-229ENST00000490866 A0A1B0GX51 115 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 SCGB1C2P0DMR2 95 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 FABP2P12104 132 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 PSMB2P49721 201 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 Q1RN00 199 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 GTF2H5Q6ZYL4 71 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 XAGE1AQ9HD64 81 aa4.47□□□□□ -1.69
SYNE1-229ENST00000490866 EPM2AB3EWF7 344 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 SLC25A20O43772 301 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 IGLV6-57P01721 117 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 INAFM2P0DMQ5 153 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 VPREB1P12018 145 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 NPC2P61916 151 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 WFDC2Q14508 124 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 SOSTDC1Q6X4U4 206 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 MRPL55Q7Z7F7 128 aaKnown RBP4.46□□□□□ -1.7
SYNE1-229ENST00000490866 KCNQ1DNQ9H478 68 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 KMT2AQ03164 3969 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 DNAH1Q9P2D7 4330 aa4.46□□□□□ -1.7
SYNE1-229ENST00000490866 C9orf129Q5T035 196 aaKnown RBP4.45□□□□□ -1.7
SYNE1-229ENST00000490866 KRTAP5-3Q6L8H2 238 aa4.45□□□□□ -1.7
SYNE1-229ENST00000490866 C22orf24Q9Y442 160 aa4.45□□□□□ -1.7
SYNE1-229ENST00000490866 IGKV2-28A0A075B6P5 120 aa4.44□□□□□ -1.7
SYNE1-229ENST00000490866 H0Y9J4 135 aa4.44□□□□□ -1.7
SYNE1-229ENST00000490866 PRYO14603 147 aa4.44□□□□□ -1.7
SYNE1-229ENST00000490866 IGKV2D-28P01615 120 aa4.44□□□□□ -1.7
SYNE1-229ENST00000490866 RPL13AP40429 203 aaKnown RBP4.44□□□□□ -1.7
SYNE1-229ENST00000490866 OCIAD2Q56VL3 154 aa4.44□□□□□ -1.7
SYNE1-229ENST00000490866 SPACA4Q8TDM5 124 aa4.44□□□□□ -1.7
SYNE1-229ENST00000490866 DNAH6Q9C0G6 4158 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms