RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 PYY3Q5JQD4 70 aa12.5□□□□□ -0.41
SHROOM3-209ENST00000490690 LOC107984156A0A0G2JMH3 177 aa12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 PLA2G1BP04054 148 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 S100A12P80511 92 aa12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 PCP2Q8IVA1 136 aa12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 ARL17AQ8IVW1 177 aa12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 LINC00528Q8N1L1 170 aa12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 Q8N1X5 172 aa12.49□□□□□ -0.41
SHROOM3-209ENST00000490690 SPATA45Q537H7 98 aa12.48□□□□□ -0.41
SHROOM3-209ENST00000490690 FAM168BA1KXE4 195 aa12.47□□□□□ -0.41
SHROOM3-209ENST00000490690 DLEU1O43261 78 aa12.47□□□□□ -0.41
SHROOM3-209ENST00000490690 COX8AP10176 69 aa12.47□□□□□ -0.41
SHROOM3-209ENST00000490690 TTTY13Q9BZ97 58 aa12.47□□□□□ -0.41
SHROOM3-209ENST00000490690 PAM16Q9Y3D7 125 aa12.47□□□□□ -0.41
SHROOM3-209ENST00000490690 MRPL55Q7Z7F7 128 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-209ENST00000490690 BOD1L2Q8IYS8 172 aa12.46□□□□□ -0.41
SHROOM3-209ENST00000490690 PPDPFQ9H3Y8 114 aa12.46□□□□□ -0.41
SHROOM3-209ENST00000490690 C22orf24Q9Y442 160 aa12.46□□□□□ -0.41
SHROOM3-209ENST00000490690 SMR3BP02814 79 aaPredicted RBP12.45□□□□□ -0.42
SHROOM3-209ENST00000490690 IFITM1P13164 125 aa12.45□□□□□ -0.42
SHROOM3-209ENST00000490690 UBE2BP63146 152 aa12.45□□□□□ -0.42
SHROOM3-209ENST00000490690 SERTAD4-AS1Q5TG53 156 aa12.45□□□□□ -0.42
SHROOM3-209ENST00000490690 SPANXDQ9BXN6 97 aa12.45□□□□□ -0.42
SHROOM3-209ENST00000490690 SPANXCQ9NY87 97 aa12.45□□□□□ -0.42
SHROOM3-209ENST00000490690 NDUFC2O95298 119 aa12.44□□□□□ -0.42
SHROOM3-209ENST00000490690 LITAFQ99732 161 aa12.44□□□□□ -0.42
SHROOM3-209ENST00000490690 VPREB1P12018 145 aa12.43□□□□□ -0.42
SHROOM3-209ENST00000490690 DAND5Q8N907 189 aa12.43□□□□□ -0.42
SHROOM3-209ENST00000490690 RYR1P21817 5038 aa12.43□□□□□ -0.42
SHROOM3-209ENST00000490690 RPL37AP61513 92 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-209ENST00000490690 SLC25A34Q6PIV7 304 aa12.42□□□□□ -0.42
SHROOM3-209ENST00000490690 PHF5AQ7RTV0 110 aaKnown RBP12.42□□□□□ -0.42
SHROOM3-209ENST00000490690 KIAA1109Q2LD37 5005 aa12.41□□□□□ -0.42
SHROOM3-209ENST00000490690 ADAMTSL4-AS1Q5T5F5 129 aa12.41□□□□□ -0.42
SHROOM3-209ENST00000490690 Q5VSD8 79 aa12.41□□□□□ -0.42
SHROOM3-209ENST00000490690 LINC00308Q8TCZ7 52 aa12.41□□□□□ -0.42
SHROOM3-209ENST00000490690 SPANXB1Q9NS25 103 aaPredicted RBP12.41□□□□□ -0.42
SHROOM3-209ENST00000490690 HSPG2P98160 4391 aa12.41□□□□□ -0.42
SHROOM3-209ENST00000490690 TRBV10-2A0A0K0K1G8 114 aa12.4□□□□□ -0.42
SHROOM3-209ENST00000490690 M0R378 163 aa12.4□□□□□ -0.42
SHROOM3-209ENST00000490690 SMIM6P0DI80 62 aa12.4□□□□□ -0.42
SHROOM3-209ENST00000490690 SRSF9Q13242 221 aaKnown RBP eCLIP12.4□□□□□ -0.42
SHROOM3-209ENST00000490690 KRTAP7-1Q8IUC3 87 aa12.4□□□□□ -0.42
SHROOM3-209ENST00000490690 CBY1Q9Y3M2 126 aa12.4□□□□□ -0.42
SHROOM3-209ENST00000490690 LINC00518Q8N0U6 118 aa12.38□□□□□ -0.43
SHROOM3-209ENST00000490690 C14orf144Q96I85 54 aa12.37□□□□□ -0.43
SHROOM3-209ENST00000490690 LINC00167Q96N53 147 aa12.37□□□□□ -0.43
SHROOM3-209ENST00000490690 HIGD1BQ9P298 99 aa12.36□□□□□ -0.43
SHROOM3-209ENST00000490690 NPC2P61916 151 aa12.35□□□□□ -0.43
SHROOM3-209ENST00000490690 PRR3P79522 188 aaKnown RBP12.35□□□□□ -0.43
SHROOM3-209ENST00000490690 SOSTDC1Q6X4U4 206 aa12.33□□□□□ -0.44
SHROOM3-209ENST00000490690 PSORS1C2Q9UIG4 136 aa12.33□□□□□ -0.44
SHROOM3-209ENST00000490690 IGLV1-50A0A075B6I6 118 aa12.32□□□□□ -0.44
SHROOM3-209ENST00000490690 GAGE10A6NGK3 116 aa12.32□□□□□ -0.44
SHROOM3-209ENST00000490690 S100A7L2Q5SY68 101 aa12.32□□□□□ -0.44
SHROOM3-209ENST00000490690 HIST1H4GQ99525 98 aa12.32□□□□□ -0.44
SHROOM3-209ENST00000490690 NCR3O14931 201 aa12.31□□□□□ -0.44
SHROOM3-209ENST00000490690 C1orf137Q5JT78 98 aa12.31□□□□□ -0.44
SHROOM3-209ENST00000490690 UQCR10Q9UDW1 63 aa12.31□□□□□ -0.44
SHROOM3-209ENST00000490690 LOC105371267A0A1B0GV96 52 aa12.3□□□□□ -0.44
SHROOM3-209ENST00000490690 MUSTN1Q8IVN3 82 aa12.3□□□□□ -0.44
SHROOM3-209ENST00000490690 RPL37AP8A6NKH3 93 aa12.29□□□□□ -0.44
SHROOM3-209ENST00000490690 PRYO14603 147 aa12.29□□□□□ -0.44
SHROOM3-209ENST00000490690 DDTP30046 118 aa12.29□□□□□ -0.44
SHROOM3-209ENST00000490690 TAL2Q16559 108 aa12.29□□□□□ -0.44
SHROOM3-209ENST00000490690 Q8NDZ9 215 aa12.29□□□□□ -0.44
SHROOM3-209ENST00000490690 IGKV2-28A0A075B6P5 120 aa12.28□□□□□ -0.44
SHROOM3-209ENST00000490690 IGKV2D-28P01615 120 aa12.28□□□□□ -0.44
SHROOM3-209ENST00000490690 TMEM126AQ9H061 195 aa12.28□□□□□ -0.44
SHROOM3-209ENST00000490690 HERC2O95714 4834 aa12.27□□□□□ -0.44
SHROOM3-209ENST00000490690 BCE1O60756 84 aa12.27□□□□□ -0.45
SHROOM3-209ENST00000490690 REG3GQ6UW15 175 aa12.27□□□□□ -0.45
SHROOM3-209ENST00000490690 KCNQ1DNQ9H478 68 aa12.26□□□□□ -0.45
SHROOM3-209ENST00000490690 FAT1Q14517 4588 aa12.25□□□□□ -0.45
SHROOM3-209ENST00000490690 TRAV13-2A0A0B4J235 113 aa12.25□□□□□ -0.45
SHROOM3-209ENST00000490690 TRBV10-3A0A0K0K1G6 114 aa12.25□□□□□ -0.45
SHROOM3-209ENST00000490690 EIF4EBP3O60516 100 aaPredicted RBP12.25□□□□□ -0.45
SHROOM3-209ENST00000490690 IGLV6-57P01721 117 aa12.25□□□□□ -0.45
SHROOM3-209ENST00000490690 IGLV7-43P04211 117 aa12.24□□□□□ -0.45
SHROOM3-209ENST00000490690 RPL28P46779 137 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-209ENST00000490690 OR13C6PQ8NH95 151 aa12.24□□□□□ -0.45
SHROOM3-209ENST00000490690 TMEM238LA0A1B0GVL6 79 aa12.23□□□□□ -0.45
SHROOM3-209ENST00000490690 A6NJY4 79 aa12.23□□□□□ -0.45
SHROOM3-209ENST00000490690 KRTAP10-4P60372 401 aaPredicted RBP12.23□□□□□ -0.45
SHROOM3-209ENST00000490690 SPINK6Q6UWN8 80 aa12.23□□□□□ -0.45
SHROOM3-209ENST00000490690 C2orf91Q6ZV80 131 aa12.23□□□□□ -0.45
SHROOM3-209ENST00000490690 VPS13BQ7Z7G8 4022 aa12.22□□□□□ -0.45
SHROOM3-209ENST00000490690 HINT1P49773 126 aaPredicted RBP12.22□□□□□ -0.45
SHROOM3-209ENST00000490690 TRAV23DV6A0A075B6W5 121 aa12.21□□□□□ -0.45
SHROOM3-209ENST00000490690 UBE2AP49459 152 aa12.21□□□□□ -0.45
SHROOM3-209ENST00000490690 KRTAP11-1Q8IUC1 163 aa12.21□□□□□ -0.45
SHROOM3-209ENST00000490690 LINC00337Q8N6G1 96 aa12.21□□□□□ -0.45
SHROOM3-209ENST00000490690 INAFM2P0DMQ5 153 aa12.2□□□□□ -0.46
SHROOM3-209ENST00000490690 HSD52Q0P140 79 aa12.2□□□□□ -0.46
SHROOM3-209ENST00000490690 A4D1N5 150 aa12.19□□□□□ -0.46
SHROOM3-209ENST00000490690 TSTD3H0UI37 97 aa12.19□□□□□ -0.46
SHROOM3-209ENST00000490690 ZNF861PO60384 105 aa12.19□□□□□ -0.46
SHROOM3-209ENST00000490690 HNRNPA3P51991 378 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-209ENST00000490690 DIRC1Q969H9 104 aa12.19□□□□□ -0.46
SHROOM3-209ENST00000490690 C12orf57Q99622 126 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms