RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HIST1H2BKO60814 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 IGKV2D-28P01615 120 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BJP06899 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 SMIM13P0DJ93 91 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BOP23527 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BBP33778 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 LINC00158P58513 81 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BDP58876 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BCP62807 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST2H2BEQ16778 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BHQ93079 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BNQ99877 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HIST1H2BMQ99879 126 aa10.86□□□□□ -0.67
COL9A3-214ENST00000490398 HSPB8Q9UJY1 196 aa10.85□□□□□ -0.67
COL9A3-214ENST00000490398 RNF213Q63HN8 5207 aa10.84□□□□□ -0.67
COL9A3-214ENST00000490398 SFTA2Q6UW10 78 aa10.84□□□□□ -0.67
COL9A3-214ENST00000490398 KRTAP13-1Q8IUC0 172 aa10.83□□□□□ -0.68
COL9A3-214ENST00000490398 IGLV1-50A0A075B6I6 118 aa10.82□□□□□ -0.68
COL9A3-214ENST00000490398 TMEM238C9JI98 176 aa10.82□□□□□ -0.68
COL9A3-214ENST00000490398 NDUFA12Q9UI09 145 aa10.82□□□□□ -0.68
COL9A3-214ENST00000490398 DPM2O94777 84 aa10.81□□□□□ -0.68
COL9A3-214ENST00000490398 MEIG1Q5JSS6 88 aa10.81□□□□□ -0.68
COL9A3-214ENST00000490398 MIR7-3HGQ8N6C7 128 aa10.81□□□□□ -0.68
COL9A3-214ENST00000490398 LEPROTO15243 131 aa10.8□□□□□ -0.68
COL9A3-214ENST00000490398 RPL28P46779 137 aaKnown RBP10.8□□□□□ -0.68
COL9A3-214ENST00000490398 RPL24P83731 157 aaKnown RBP10.8□□□□□ -0.68
COL9A3-214ENST00000490398 IGKCP01834 107 aa10.79□□□□□ -0.68
COL9A3-214ENST00000490398 PLNP26678 52 aa10.79□□□□□ -0.68
COL9A3-214ENST00000490398 M0R378 163 aa10.78□□□□□ -0.68
COL9A3-214ENST00000490398 HERV-K104P63124 156 aa10.78□□□□□ -0.68
COL9A3-214ENST00000490398 MAP1LC3CQ9BXW4 147 aa10.78□□□□□ -0.68
COL9A3-214ENST00000490398 TMEM126AQ9H061 195 aa10.78□□□□□ -0.68
COL9A3-214ENST00000490398 ANAPC11Q9NYG5 84 aa10.78□□□□□ -0.68
COL9A3-214ENST00000490398 MYMXA0A1B0GTQ4 84 aa10.77□□□□□ -0.69
COL9A3-214ENST00000490398 PRLHP81277 87 aa10.77□□□□□ -0.69
COL9A3-214ENST00000490398 DAND5Q8N907 189 aa10.77□□□□□ -0.69
COL9A3-214ENST00000490398 A0A087X002 238 aa10.76□□□□□ -0.69
COL9A3-214ENST00000490398 J3QQQ9 107 aa10.76□□□□□ -0.69
COL9A3-214ENST00000490398 UBE2AP49459 152 aa10.76□□□□□ -0.69
COL9A3-214ENST00000490398 BOD1L2Q8IYS8 172 aa10.76□□□□□ -0.69
COL9A3-214ENST00000490398 PLEKHB2Q96CS7 222 aa10.76□□□□□ -0.69
COL9A3-214ENST00000490398 SYS1-DBNDD2H3BUS1 97 aa10.75□□□□□ -0.69
COL9A3-214ENST00000490398 NCR3O14931 201 aa10.74□□□□□ -0.69
COL9A3-214ENST00000490398 ATP6V1G1O75348 118 aa10.74□□□□□ -0.69
COL9A3-214ENST00000490398 FAM19A1Q7Z5A9 133 aa10.74□□□□□ -0.69
COL9A3-214ENST00000490398 HERVK_113P61574 105 aa10.72□□□□□ -0.69
COL9A3-214ENST00000490398 LGALS3P17931 250 aaKnown RBP10.7□□□□□ -0.7
COL9A3-214ENST00000490398 COA6Q5JTJ3 125 aaKnown RBP10.7□□□□□ -0.7
COL9A3-214ENST00000490398 LINC01545Q5VT33 79 aa10.7□□□□□ -0.7
COL9A3-214ENST00000490398 LINC00587B1AMM8 73 aa10.69□□□□□ -0.7
COL9A3-214ENST00000490398 E9PLD3 99 aa10.69□□□□□ -0.7
COL9A3-214ENST00000490398 EIF4EBP3O60516 100 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-214ENST00000490398 C3orf79P0CE67 100 aa10.69□□□□□ -0.7
COL9A3-214ENST00000490398 RPL13AP40429 203 aaKnown RBP10.69□□□□□ -0.7
COL9A3-214ENST00000490398 KRTAP13-2Q52LG2 175 aa10.69□□□□□ -0.7
COL9A3-214ENST00000490398 NMUP48645 174 aa10.68□□□□□ -0.7
COL9A3-214ENST00000490398 ADAMTSL4-AS1Q5T5F5 129 aa10.68□□□□□ -0.7
COL9A3-214ENST00000490398 LOC107984156A0A0G2JMH3 177 aa10.67□□□□□ -0.7
COL9A3-214ENST00000490398 A0A0J9YXY3 114 aa10.67□□□□□ -0.7
COL9A3-214ENST00000490398 PET117Q6UWS5 81 aa10.67□□□□□ -0.7
COL9A3-214ENST00000490398 SOSTDC1Q6X4U4 206 aa10.67□□□□□ -0.7
COL9A3-214ENST00000490398 ARL17AQ8IVW1 177 aa10.67□□□□□ -0.7
COL9A3-214ENST00000490398 TRBV10-3A0A0K0K1G6 114 aa10.66□□□□□ -0.7
COL9A3-214ENST00000490398 CRYGAP11844 174 aa10.66□□□□□ -0.7
COL9A3-214ENST00000490398 IGKV2D-26A0A0A0MRZ7 120 aa10.65□□□□□ -0.7
COL9A3-214ENST00000490398 NPC2P61916 151 aa10.65□□□□□ -0.7
COL9A3-214ENST00000490398 TTTY13Q9BZ97 58 aa10.65□□□□□ -0.7
COL9A3-214ENST00000490398 PRYO14603 147 aa10.64□□□□□ -0.71
COL9A3-214ENST00000490398 SPRR1AP35321 89 aa10.64□□□□□ -0.71
COL9A3-214ENST00000490398 HIGD2AQ9BW72 106 aa10.64□□□□□ -0.71
COL9A3-214ENST00000490398 KCNQ1DNQ9H478 68 aa10.64□□□□□ -0.71
COL9A3-214ENST00000490398 KRTAP4-16G5E9R7 235 aaPredicted RBP10.63□□□□□ -0.71
COL9A3-214ENST00000490398 KRTDAPP60985 99 aa10.63□□□□□ -0.71
COL9A3-214ENST00000490398 TYMSOSQ8TAI1 123 aa10.63□□□□□ -0.71
COL9A3-214ENST00000490398 TSPAN13O95857 204 aa10.62□□□□□ -0.71
COL9A3-214ENST00000490398 LITAFQ99732 161 aa10.62□□□□□ -0.71
COL9A3-214ENST00000490398 FAM229BQ4G0N7 80 aa10.6□□□□□ -0.71
COL9A3-214ENST00000490398 LINC00337Q8N6G1 96 aa10.6□□□□□ -0.71
COL9A3-214ENST00000490398 TRBV10-2A0A0K0K1G8 114 aa10.58□□□□□ -0.72
COL9A3-214ENST00000490398 DDTP30046 118 aa10.58□□□□□ -0.72
COL9A3-214ENST00000490398 C3orf22Q8N5N4 141 aa10.58□□□□□ -0.72
COL9A3-214ENST00000490398 SMCR5Q8TEV8 140 aa10.58□□□□□ -0.72
COL9A3-214ENST00000490398 SPRR4Q96PI1 79 aa10.58□□□□□ -0.72
COL9A3-214ENST00000490398 MIEN1Q9BRT3 115 aa10.58□□□□□ -0.72
COL9A3-214ENST00000490398 SPANXB1Q9NS25 103 aaPredicted RBP10.58□□□□□ -0.72
COL9A3-214ENST00000490398 NDUFC2O95298 119 aa10.57□□□□□ -0.72
COL9A3-214ENST00000490398 ANKRD39Q53RE8 183 aa10.57□□□□□ -0.72
COL9A3-214ENST00000490398 ATOH7Q8N100 152 aa10.57□□□□□ -0.72
COL9A3-214ENST00000490398 ETDCA0A1B0GVM5 59 aa10.56□□□□□ -0.72
COL9A3-214ENST00000490398 ZNF815PA8K554 130 aa10.56□□□□□ -0.72
COL9A3-214ENST00000490398 B5MCH6 92 aa10.56□□□□□ -0.72
COL9A3-214ENST00000490398 IGLV6-57P01721 117 aa10.56□□□□□ -0.72
COL9A3-214ENST00000490398 MUC17Q685J3 4493 aa10.56□□□□□ -0.72
COL9A3-214ENST00000490398 ERC2-IT1O76042 136 aa10.55□□□□□ -0.72
COL9A3-214ENST00000490398 LINC00308Q8TCZ7 52 aa10.55□□□□□ -0.72
COL9A3-214ENST00000490398 S100A1P23297 94 aa10.53□□□□□ -0.72
COL9A3-214ENST00000490398 PRR4Q16378 134 aa10.53□□□□□ -0.72
COL9A3-214ENST00000490398 PPDPFQ9H3Y8 114 aa10.53□□□□□ -0.72
COL9A3-214ENST00000490398 TIMM17BO60830 172 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms