RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 PRR4Q16378 134 aa13.56□□□□□ -0.24
COL9A3-213ENST00000489045 TYMSOSQ8TAI1 123 aa13.56□□□□□ -0.24
COL9A3-213ENST00000489045 TMEM126AQ9H061 195 aa13.56□□□□□ -0.24
COL9A3-213ENST00000489045 LINC00158P58513 81 aa13.55□□□□□ -0.24
COL9A3-213ENST00000489045 PRLHP81277 87 aa13.55□□□□□ -0.24
COL9A3-213ENST00000489045 TSPAN13O95857 204 aa13.54□□□□□ -0.24
COL9A3-213ENST00000489045 FAM19A1Q7Z5A9 133 aa13.54□□□□□ -0.24
COL9A3-213ENST00000489045 FAM19A2Q8N3H0 131 aa13.54□□□□□ -0.24
COL9A3-213ENST00000489045 A0A0U1RRA0 63 aa13.53□□□□□ -0.24
COL9A3-213ENST00000489045 HSBP1O75506 76 aa13.53□□□□□ -0.24
COL9A3-213ENST00000489045 M0R378 163 aa13.52□□□□□ -0.25
COL9A3-213ENST00000489045 KRTAP13-2Q52LG2 175 aa13.52□□□□□ -0.25
COL9A3-213ENST00000489045 TRGC2P03986 189 aa13.49□□□□□ -0.25
COL9A3-213ENST00000489045 FAM229BQ4G0N7 80 aa13.49□□□□□ -0.25
COL9A3-213ENST00000489045 H0Y8G0 127 aa13.48□□□□□ -0.25
COL9A3-213ENST00000489045 SMIM13P0DJ93 91 aa13.48□□□□□ -0.25
COL9A3-213ENST00000489045 MEIG1Q5JSS6 88 aa13.47□□□□□ -0.25
COL9A3-213ENST00000489045 ATP6V1G1O75348 118 aa13.46□□□□□ -0.25
COL9A3-213ENST00000489045 SERF1AO75920 110 aa13.44□□□□□ -0.26
COL9A3-213ENST00000489045 LINC00310P59036 64 aa13.44□□□□□ -0.26
COL9A3-213ENST00000489045 HERV-K104P63124 156 aa13.44□□□□□ -0.26
COL9A3-213ENST00000489045 LEPROTL1O95214 131 aa13.43□□□□□ -0.26
COL9A3-213ENST00000489045 BOD1L2Q8IYS8 172 aa13.43□□□□□ -0.26
COL9A3-213ENST00000489045 MIR7-3HGQ8N6C7 128 aa13.43□□□□□ -0.26
COL9A3-213ENST00000489045 NDUFA12Q9UI09 145 aa13.43□□□□□ -0.26
COL9A3-213ENST00000489045 IGKV2D-26A0A0A0MRZ7 120 aa13.42□□□□□ -0.26
COL9A3-213ENST00000489045 PLEKHB2Q96CS7 222 aa13.42□□□□□ -0.26
COL9A3-213ENST00000489045 HIGD2AQ9BW72 106 aa13.42□□□□□ -0.26
COL9A3-213ENST00000489045 LINC00304Q8N9R0 145 aa13.41□□□□□ -0.26
COL9A3-213ENST00000489045 MYMXA0A1B0GTQ4 84 aa13.4□□□□□ -0.26
COL9A3-213ENST00000489045 NCR3O14931 201 aa13.4□□□□□ -0.26
COL9A3-213ENST00000489045 LINC00587B1AMM8 73 aa13.39□□□□□ -0.27
COL9A3-213ENST00000489045 TSPEAR-AS2P59090 65 aa13.39□□□□□ -0.27
COL9A3-213ENST00000489045 PRYO14603 147 aa13.38□□□□□ -0.27
COL9A3-213ENST00000489045 SLC7A5P1Q8MH63 180 aa13.38□□□□□ -0.27
COL9A3-213ENST00000489045 LEPROTO15243 131 aa13.37□□□□□ -0.27
COL9A3-213ENST00000489045 FABP4P15090 132 aa13.36□□□□□ -0.27
COL9A3-213ENST00000489045 PLNP26678 52 aa13.36□□□□□ -0.27
COL9A3-213ENST00000489045 MAP1LC3CQ9BXW4 147 aa13.36□□□□□ -0.27
COL9A3-213ENST00000489045 HSPB8Q9UJY1 196 aa13.36□□□□□ -0.27
COL9A3-213ENST00000489045 C3orf22Q8N5N4 141 aa13.35□□□□□ -0.27
COL9A3-213ENST00000489045 SPRR4Q96PI1 79 aa13.34□□□□□ -0.27
COL9A3-213ENST00000489045 RETNLBQ9BQ08 111 aa13.34□□□□□ -0.27
COL9A3-213ENST00000489045 PMCHL2Q9BQD1 86 aa13.34□□□□□ -0.27
COL9A3-213ENST00000489045 COLCA2A8K830 154 aa13.33□□□□□ -0.28
COL9A3-213ENST00000489045 DPM2O94777 84 aa13.33□□□□□ -0.28
COL9A3-213ENST00000489045 DAND5Q8N907 189 aa13.33□□□□□ -0.28
COL9A3-213ENST00000489045 KCNQ1DNQ9H478 68 aa13.33□□□□□ -0.28
COL9A3-213ENST00000489045 TRBV10-3A0A0K0K1G6 114 aa13.32□□□□□ -0.28
COL9A3-213ENST00000489045 SPRR1AP35321 89 aa13.32□□□□□ -0.28
COL9A3-213ENST00000489045 LINC00337Q8N6G1 96 aa13.32□□□□□ -0.28
COL9A3-213ENST00000489045 J3QQQ9 107 aa13.31□□□□□ -0.28
COL9A3-213ENST00000489045 HERVK_113P61574 105 aa13.31□□□□□ -0.28
COL9A3-213ENST00000489045 IGKCP01834 107 aa13.3□□□□□ -0.28
COL9A3-213ENST00000489045 ZNF706Q9Y5V0 76 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-213ENST00000489045 ETDCA0A1B0GVM5 59 aa13.29□□□□□ -0.28
COL9A3-213ENST00000489045 KRTAP4-16G5E9R7 235 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-213ENST00000489045 LOC107984156A0A0G2JMH3 177 aa13.27□□□□□ -0.29
COL9A3-213ENST00000489045 LGALS3P17931 250 aaKnown RBP13.27□□□□□ -0.29
COL9A3-213ENST00000489045 NMUP48645 174 aa13.27□□□□□ -0.29
COL9A3-213ENST00000489045 ARL17AQ8IVW1 177 aa13.27□□□□□ -0.29
COL9A3-213ENST00000489045 CTAG1AP78358 180 aa13.26□□□□□ -0.29
COL9A3-213ENST00000489045 SMCR5Q8TEV8 140 aa13.26□□□□□ -0.29
COL9A3-213ENST00000489045 S100A12P80511 92 aa13.25□□□□□ -0.29
COL9A3-213ENST00000489045 MUC2Q02817 5179 aa13.24□□□□□ -0.29
COL9A3-213ENST00000489045 TRBV10-2A0A0K0K1G8 114 aa13.23□□□□□ -0.29
COL9A3-213ENST00000489045 DDTP30046 118 aa13.23□□□□□ -0.29
COL9A3-213ENST00000489045 MIEN1Q9BRT3 115 aa13.23□□□□□ -0.29
COL9A3-213ENST00000489045 PPDPFQ9H3Y8 114 aa13.22□□□□□ -0.29
COL9A3-213ENST00000489045 B5MCH6 92 aa13.21□□□□□ -0.29
COL9A3-213ENST00000489045 SPAG11AQ6PDA7 123 aa13.21□□□□□ -0.29
COL9A3-213ENST00000489045 SPANXB1Q9NS25 103 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-213ENST00000489045 IGLV7-46A0A075B6I9 117 aa13.18□□□□□ -0.3
COL9A3-213ENST00000489045 A0A0J9YXY3 114 aa13.18□□□□□ -0.3
COL9A3-213ENST00000489045 E9PLD3 99 aa13.18□□□□□ -0.3
COL9A3-213ENST00000489045 NDUFC2O95298 119 aa13.18□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BKO60814 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BJP06899 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BOP23527 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BBP33778 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BDP58876 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 NPC2P61916 151 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BCP62807 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST2H2BEQ16778 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 TPRXLQ17RH7 258 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 LINC00483Q53H64 154 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.17□□□□□ -0.3
COL9A3-213ENST00000489045 Q8NBF4 154 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BHQ93079 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BNQ99877 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 HIST1H2BMQ99879 126 aa13.17□□□□□ -0.3
COL9A3-213ENST00000489045 SYS1-DBNDD2H3BUS1 97 aa13.16□□□□□ -0.3
COL9A3-213ENST00000489045 ERC2-IT1O76042 136 aa13.16□□□□□ -0.3
COL9A3-213ENST00000489045 C4orf48Q5BLP8 95 aa13.16□□□□□ -0.3
COL9A3-213ENST00000489045 S100A7L2Q5SY68 101 aa13.16□□□□□ -0.3
COL9A3-213ENST00000489045 ADAMTSL4-AS1Q5T5F5 129 aa13.16□□□□□ -0.3
COL9A3-213ENST00000489045 SOSTDC1Q6X4U4 206 aa13.16□□□□□ -0.3
COL9A3-213ENST00000489045 IGLV6-57P01721 117 aa13.15□□□□□ -0.3
COL9A3-213ENST00000489045 GAGE2AQ6NT46 116 aa13.15□□□□□ -0.3
COL9A3-213ENST00000489045 EIF4EBP3O60516 100 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms