RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 SMCR5Q8TEV8 140 aa5.03□□□□□ -1.6
COL17A1-207ENST00000488320 SMIM27A0A1W2PRY6 76 aa5.02□□□□□ -1.61
COL17A1-207ENST00000488320 NPSP0C0P6 89 aa5.02□□□□□ -1.61
COL17A1-207ENST00000488320 ORMDL2Q53FV1 153 aa5.02□□□□□ -1.61
COL17A1-207ENST00000488320 GAGE2AQ6NT46 116 aa5.02□□□□□ -1.61
COL17A1-207ENST00000488320 MAP1LC3AQ9H492 121 aa5.02□□□□□ -1.61
COL17A1-207ENST00000488320 IGIPA6NJ69 53 aa5.01□□□□□ -1.61
COL17A1-207ENST00000488320 SPINK8P0C7L1 97 aa5.01□□□□□ -1.61
COL17A1-207ENST00000488320 BLOC1S1P78537 153 aa5.01□□□□□ -1.61
COL17A1-207ENST00000488320 SND1-IT1Q9HBX3 110 aa5.01□□□□□ -1.61
COL17A1-207ENST00000488320 ADIRFQ15847 76 aa5□□□□□ -1.61
COL17A1-207ENST00000488320 SLC51BQ86UW2 128 aa5□□□□□ -1.61
COL17A1-207ENST00000488320 Q8N8P6 123 aa5□□□□□ -1.61
COL17A1-207ENST00000488320 TIMM17AQ99595 171 aa5□□□□□ -1.61
COL17A1-207ENST00000488320 FCGBPQ9Y6R7 5405 aaPredicted RBP4.99□□□□□ -1.61
COL17A1-207ENST00000488320 TINCRA0A1B0GVN0 87 aa4.99□□□□□ -1.61
COL17A1-207ENST00000488320 PRSS47A8MTI9 375 aa4.99□□□□□ -1.61
COL17A1-207ENST00000488320 KRTAP4-16G5E9R7 235 aaPredicted RBP4.99□□□□□ -1.61
COL17A1-207ENST00000488320 RPL23P62829 140 aaKnown RBP4.99□□□□□ -1.61
COL17A1-207ENST00000488320 ETDCA0A1B0GVM5 59 aa4.98□□□□□ -1.61
COL17A1-207ENST00000488320 G0S2P27469 103 aa4.98□□□□□ -1.61
COL17A1-207ENST00000488320 RGS21Q2M5E4 152 aa4.98□□□□□ -1.61
COL17A1-207ENST00000488320 LINC00483Q53H64 154 aa4.98□□□□□ -1.61
COL17A1-207ENST00000488320 KRTAP4-9Q9BYQ8 210 aa4.98□□□□□ -1.61
COL17A1-207ENST00000488320 ERG28Q9UKR5 140 aa4.98□□□□□ -1.61
COL17A1-207ENST00000488320 A0A1B0GXF2 115 aa4.97□□□□□ -1.61
COL17A1-207ENST00000488320 SRP19P09132 144 aaKnown RBP4.97□□□□□ -1.61
COL17A1-207ENST00000488320 CFC1P0CG37 223 aa4.97□□□□□ -1.61
COL17A1-207ENST00000488320 C9orf153Q5TBE3 101 aa4.97□□□□□ -1.61
COL17A1-207ENST00000488320 Q8NDZ9 215 aa4.97□□□□□ -1.61
COL17A1-207ENST00000488320 LAMTOR2Q9Y2Q5 125 aa4.97□□□□□ -1.61
COL17A1-207ENST00000488320 H3BRM9 83 aa4.96□□□□□ -1.62
COL17A1-207ENST00000488320 K7EMI3 77 aa4.96□□□□□ -1.62
COL17A1-207ENST00000488320 PRYO14603 147 aa4.96□□□□□ -1.62
COL17A1-207ENST00000488320 COX17Q14061 63 aa4.96□□□□□ -1.62
COL17A1-207ENST00000488320 Q6Q795 121 aa4.96□□□□□ -1.62
COL17A1-207ENST00000488320 ZNF625Q96I27 306 aaPredicted RBP4.96□□□□□ -1.62
COL17A1-207ENST00000488320 SCGB3A1Q96QR1 104 aa4.96□□□□□ -1.62
COL17A1-207ENST00000488320 IGLV5-45A0A087WSX0 123 aa4.95□□□□□ -1.62
COL17A1-207ENST00000488320 IGLV6-57P01721 117 aa4.95□□□□□ -1.62
COL17A1-207ENST00000488320 ALKAL2Q6UX46 152 aa4.94□□□□□ -1.62
COL17A1-207ENST00000488320 ERASQ7Z444 233 aa4.94□□□□□ -1.62
COL17A1-207ENST00000488320 TOMM6Q96B49 74 aa4.94□□□□□ -1.62
COL17A1-207ENST00000488320 NAT8Q9UHE5 227 aa4.94□□□□□ -1.62
COL17A1-207ENST00000488320 LINC00158P58513 81 aa4.93□□□□□ -1.62
COL17A1-207ENST00000488320 HRCT1Q6UXD1 115 aa4.93□□□□□ -1.62
COL17A1-207ENST00000488320 ATP5L2Q7Z4Y8 100 aa4.93□□□□□ -1.62
COL17A1-207ENST00000488320 LIMD2Q9BT23 127 aa4.93□□□□□ -1.62
COL17A1-207ENST00000488320 NXT2Q9NPJ8 142 aaKnown RBP4.93□□□□□ -1.62
COL17A1-207ENST00000488320 ADCYAP1P18509 176 aa4.92□□□□□ -1.62
COL17A1-207ENST00000488320 S100A12P80511 92 aa4.92□□□□□ -1.62
COL17A1-207ENST00000488320 CST9LQ9H4G1 147 aa4.92□□□□□ -1.62
COL17A1-207ENST00000488320 A0A0U1RRA0 63 aa4.91□□□□□ -1.62
COL17A1-207ENST00000488320 ATP6V1G1O75348 118 aa4.91□□□□□ -1.62
COL17A1-207ENST00000488320 ERC2-IT1O76042 136 aa4.91□□□□□ -1.62
COL17A1-207ENST00000488320 SPRR1AP35321 89 aa4.91□□□□□ -1.62
COL17A1-207ENST00000488320 KCNQ1DNQ9H478 68 aa4.91□□□□□ -1.62
COL17A1-207ENST00000488320 TRAV9-1A0A075B6T8 112 aa4.9□□□□□ -1.63
COL17A1-207ENST00000488320 NCR3O14931 201 aa4.9□□□□□ -1.63
COL17A1-207ENST00000488320 EIF4EBP3O60516 100 aaPredicted RBP4.9□□□□□ -1.63
COL17A1-207ENST00000488320 PMVKQ15126 192 aa4.9□□□□□ -1.63
COL17A1-207ENST00000488320 MACF1Q9UPN3 7388 aaKnown RBP4.89□□□□□ -1.63
COL17A1-207ENST00000488320 SYNE2Q8WXH0 6885 aaKnown RBP4.89□□□□□ -1.63
COL17A1-207ENST00000488320 IGLV5-39A0A0G2JS06 123 aa4.89□□□□□ -1.63
COL17A1-207ENST00000488320 B5MCH6 92 aa4.89□□□□□ -1.63
COL17A1-207ENST00000488320 RPL37P61927 97 aaKnown RBP4.89□□□□□ -1.63
COL17A1-207ENST00000488320 BOD1L2Q8IYS8 172 aa4.89□□□□□ -1.63
COL17A1-207ENST00000488320 TRBV10-3A0A0K0K1G6 114 aa4.88□□□□□ -1.63
COL17A1-207ENST00000488320 NDUFA6P56556 154 aa4.88□□□□□ -1.63
COL17A1-207ENST00000488320 SFTA2Q6UW10 78 aa4.88□□□□□ -1.63
COL17A1-207ENST00000488320 KRTAP4-2Q9BYR5 136 aa4.88□□□□□ -1.63
COL17A1-207ENST00000488320 LINC01549A6NIU2 74 aa4.87□□□□□ -1.63
COL17A1-207ENST00000488320 KRTAP9-8Q9BYQ0 159 aa4.87□□□□□ -1.63
COL17A1-207ENST00000488320 C9JQL5 133 aa4.86□□□□□ -1.63
COL17A1-207ENST00000488320 TCTE3Q8IZS6 198 aa4.86□□□□□ -1.63
COL17A1-207ENST00000488320 Q9BRP9 147 aa4.86□□□□□ -1.63
COL17A1-207ENST00000488320 LINC00846Q9NV44 126 aa4.86□□□□□ -1.63
COL17A1-207ENST00000488320 IGLC3P0DOY3 106 aa4.85□□□□□ -1.63
COL17A1-207ENST00000488320 ZNF22P17026 224 aaPredicted RBP4.85□□□□□ -1.63
COL17A1-207ENST00000488320 PEA15Q15121 130 aa4.85□□□□□ -1.63
COL17A1-207ENST00000488320 KRTAP19-4Q3LI73 84 aa4.85□□□□□ -1.63
COL17A1-207ENST00000488320 SMIM13P0DJ93 91 aa4.84□□□□□ -1.63
COL17A1-207ENST00000488320 KIAA1644Q3SXP7 199 aa4.84□□□□□ -1.63
COL17A1-207ENST00000488320 MEIG1Q5JSS6 88 aa4.84□□□□□ -1.63
COL17A1-207ENST00000488320 DDTP30046 118 aa4.83□□□□□ -1.64
COL17A1-207ENST00000488320 JOSD1Q15040 202 aaPredicted RBP4.83□□□□□ -1.64
COL17A1-207ENST00000488320 TMEM170BQ5T4T1 132 aa4.83□□□□□ -1.64
COL17A1-207ENST00000488320 Q6ZRX8 168 aa4.83□□□□□ -1.64
COL17A1-207ENST00000488320 ST20-AS1Q8NBB2 130 aa4.83□□□□□ -1.64
COL17A1-207ENST00000488320 MIR7-3HGQ8N6C7 128 aa4.82□□□□□ -1.64
COL17A1-207ENST00000488320 H7C2G1 150 aa4.81□□□□□ -1.64
COL17A1-207ENST00000488320 SLC25A34Q6PIV7 304 aa4.81□□□□□ -1.64
COL17A1-207ENST00000488320 SMCO4Q9NRQ5 59 aa4.81□□□□□ -1.64
COL17A1-207ENST00000488320 C20orf202A1L168 122 aa4.8□□□□□ -1.64
COL17A1-207ENST00000488320 FA2HQ7L5A8 372 aa4.8□□□□□ -1.64
COL17A1-207ENST00000488320 LAMTOR3Q9UHA4 124 aa4.8□□□□□ -1.64
COL17A1-207ENST00000488320 S100A7L2Q5SY68 101 aa4.79□□□□□ -1.64
COL17A1-207ENST00000488320 ATP11AUNQ6ZP68 121 aa4.79□□□□□ -1.64
COL17A1-207ENST00000488320 ANAPC16Q96DE5 110 aa4.79□□□□□ -1.64
COL17A1-207ENST00000488320 KRTAP4-11Q9BYQ6 195 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms