RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 TLX1NBP0CAT3 122 aa7.54□□□□□ -1.2
SDC3-204ENST00000487984 LGALS3P17931 250 aaKnown RBP7.54□□□□□ -1.2
SDC3-204ENST00000487984 NMUP48645 174 aa7.54□□□□□ -1.2
SDC3-204ENST00000487984 C1orf137Q5JT78 98 aa7.54□□□□□ -1.2
SDC3-204ENST00000487984 SPINK8P0C7L1 97 aa7.53□□□□□ -1.2
SDC3-204ENST00000487984 GAGE2EQ4V326 116 aa7.53□□□□□ -1.2
SDC3-204ENST00000487984 ANKRD39Q53RE8 183 aa7.53□□□□□ -1.2
SDC3-204ENST00000487984 GAGE2DQ9UEU5 116 aa7.53□□□□□ -1.2
SDC3-204ENST00000487984 IGLV5-39A0A0G2JS06 123 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 SMIM1B2RUZ4 78 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 J3QQQ9 107 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 PRSS2P07478 247 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 SLC25A34Q6PIV7 304 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 SFTA2Q6UW10 78 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 C2orf82Q6UX34 121 aa7.52□□□□□ -1.21
SDC3-204ENST00000487984 FAM19A5Q7Z5A7 132 aaPredicted RBP7.52□□□□□ -1.21
SDC3-204ENST00000487984 TRBV30A0A0K0K1B3 111 aa7.51□□□□□ -1.21
SDC3-204ENST00000487984 COX8AP10176 69 aa7.51□□□□□ -1.21
SDC3-204ENST00000487984 KRTAP11-1Q8IUC1 163 aa7.51□□□□□ -1.21
SDC3-204ENST00000487984 UQCR10Q9UDW1 63 aa7.51□□□□□ -1.21
SDC3-204ENST00000487984 DLEU1O43261 78 aa7.5□□□□□ -1.21
SDC3-204ENST00000487984 KRTAP7-1Q8IUC3 87 aa7.5□□□□□ -1.21
SDC3-204ENST00000487984 COX7B2Q8TF08 81 aa7.5□□□□□ -1.21
SDC3-204ENST00000487984 IGKV2D-26A0A0A0MRZ7 120 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 MYMXA0A1B0GTQ4 84 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 ZNF815PA8K554 130 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 IGLV7-43P04211 117 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 CXCL5P42830 114 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 C6orf226Q5I0X4 101 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 Q8IZM0 81 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 C14orf144Q96I85 54 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 TOMM7Q9P0U1 55 aa7.49□□□□□ -1.21
SDC3-204ENST00000487984 RNF213Q63HN8 5207 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 NDUFC2-KCTD14E9PQ53 114 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 M0QXV9 152 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 HERV-K104P63124 156 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 C9orf129Q5T035 196 aaKnown RBP7.48□□□□□ -1.21
SDC3-204ENST00000487984 BOD1L2Q8IYS8 172 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 MIEN1Q9BRT3 115 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 PRO1933Q9H354 126 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 NDUFA12Q9UI09 145 aa7.48□□□□□ -1.21
SDC3-204ENST00000487984 LINC00587B1AMM8 73 aa7.47□□□□□ -1.21
SDC3-204ENST00000487984 CKS1BP61024 79 aa7.47□□□□□ -1.21
SDC3-204ENST00000487984 SCGB1D4Q6XE38 83 aa7.47□□□□□ -1.21
SDC3-204ENST00000487984 PCP2Q8IVA1 136 aa7.47□□□□□ -1.21
SDC3-204ENST00000487984 DIRC1Q969H9 104 aa7.47□□□□□ -1.21
SDC3-204ENST00000487984 UBE2BP63146 152 aa7.46□□□□□ -1.22
SDC3-204ENST00000487984 H0Y9J4 135 aa7.45□□□□□ -1.22
SDC3-204ENST00000487984 TSPEAR-AS2P59090 65 aa7.45□□□□□ -1.22
SDC3-204ENST00000487984 PRR26Q8N8Z3 221 aa7.44□□□□□ -1.22
SDC3-204ENST00000487984 ZNF625Q96I27 306 aaPredicted RBP7.43□□□□□ -1.22
SDC3-204ENST00000487984 TTTY13Q9BZ97 58 aa7.43□□□□□ -1.22
SDC3-204ENST00000487984 HIGD1BQ9P298 99 aa7.43□□□□□ -1.22
SDC3-204ENST00000487984 TMEM238C9JI98 176 aa7.42□□□□□ -1.22
SDC3-204ENST00000487984 TIMM17BO60830 172 aa7.42□□□□□ -1.22
SDC3-204ENST00000487984 DDTP30046 118 aa7.42□□□□□ -1.22
SDC3-204ENST00000487984 MEIG1Q5JSS6 88 aa7.42□□□□□ -1.22
SDC3-204ENST00000487984 A0A0J9YXY3 114 aa7.41□□□□□ -1.22
SDC3-204ENST00000487984 KRTAP1-4P0C5Y4 121 aa7.41□□□□□ -1.22
SDC3-204ENST00000487984 COPS9Q8WXC6 57 aa7.41□□□□□ -1.22
SDC3-204ENST00000487984 XAGE1AQ9HD64 81 aa7.41□□□□□ -1.22
SDC3-204ENST00000487984 PCP4L1A6NKN8 68 aa7.4□□□□□ -1.22
SDC3-204ENST00000487984 TAL2Q16559 108 aa7.4□□□□□ -1.22
SDC3-204ENST00000487984 Q6ZVH6 145 aa7.4□□□□□ -1.22
SDC3-204ENST00000487984 C22orf24Q9Y442 160 aa7.4□□□□□ -1.22
SDC3-204ENST00000487984 IGLV1-50A0A075B6I6 118 aa7.39□□□□□ -1.23
SDC3-204ENST00000487984 COX17Q14061 63 aa7.39□□□□□ -1.23
SDC3-204ENST00000487984 HIST1H4GQ99525 98 aa7.39□□□□□ -1.23
SDC3-204ENST00000487984 SPANXB1Q9NS25 103 aaPredicted RBP7.39□□□□□ -1.23
SDC3-204ENST00000487984 LINC00158P58513 81 aa7.38□□□□□ -1.23
SDC3-204ENST00000487984 HSD52Q0P140 79 aa7.38□□□□□ -1.23
SDC3-204ENST00000487984 C2orf91Q6ZV80 131 aa7.38□□□□□ -1.23
SDC3-204ENST00000487984 ERG28Q9UKR5 140 aa7.38□□□□□ -1.23
SDC3-204ENST00000487984 M0R143 59 aa7.37□□□□□ -1.23
SDC3-204ENST00000487984 ZNF861PO60384 105 aa7.37□□□□□ -1.23
SDC3-204ENST00000487984 IFITM1P13164 125 aa7.37□□□□□ -1.23
SDC3-204ENST00000487984 LBHQ53QV2 105 aaPredicted RBP7.37□□□□□ -1.23
SDC3-204ENST00000487984 CTAG1AP78358 180 aa7.36□□□□□ -1.23
SDC3-204ENST00000487984 MRPL55Q7Z7F7 128 aaKnown RBP7.36□□□□□ -1.23
SDC3-204ENST00000487984 SPANXDQ9BXN6 97 aa7.36□□□□□ -1.23
SDC3-204ENST00000487984 SPANXCQ9NY87 97 aa7.36□□□□□ -1.23
SDC3-204ENST00000487984 TP73-AS1Q9UF72 201 aa7.36□□□□□ -1.23
SDC3-204ENST00000487984 TMEM238LA0A1B0GVL6 79 aa7.35□□□□□ -1.23
SDC3-204ENST00000487984 A6NJY4 79 aa7.35□□□□□ -1.23
SDC3-204ENST00000487984 SMIM13P0DJ93 91 aa7.35□□□□□ -1.23
SDC3-204ENST00000487984 PFN2P35080 140 aa7.35□□□□□ -1.23
SDC3-204ENST00000487984 LPAP08519 4548 aa7.35□□□□□ -1.23
SDC3-204ENST00000487984 A0A0U1RRA0 63 aa7.34□□□□□ -1.23
SDC3-204ENST00000487984 RPL13AP40429 203 aaKnown RBP7.34□□□□□ -1.23
SDC3-204ENST00000487984 RPL24P83731 157 aaKnown RBP7.34□□□□□ -1.23
SDC3-204ENST00000487984 CEND1Q8N111 149 aa7.33□□□□□ -1.24
SDC3-204ENST00000487984 MIR7-3HGQ8N6C7 128 aa7.33□□□□□ -1.24
SDC3-204ENST00000487984 LITAFQ99732 161 aa7.33□□□□□ -1.24
SDC3-204ENST00000487984 PPDPFQ9H3Y8 114 aa7.33□□□□□ -1.24
SDC3-204ENST00000487984 RPL37AP8A6NKH3 93 aa7.32□□□□□ -1.24
SDC3-204ENST00000487984 BCE1O60756 84 aa7.32□□□□□ -1.24
SDC3-204ENST00000487984 ADAMTSL4-AS1Q5T5F5 129 aa7.32□□□□□ -1.24
SDC3-204ENST00000487984 LINC00167Q96N53 147 aa7.32□□□□□ -1.24
SDC3-204ENST00000487984 GAGE10A6NGK3 116 aa7.31□□□□□ -1.24
SDC3-204ENST00000487984 RPL28P46779 137 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms