RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 LYZL2Q7Z4W2 148 aa4.56□□□□□ -1.68
HDAC3-209ENST00000486618 Q8N9P0 234 aaPredicted RBP4.56□□□□□ -1.68
HDAC3-209ENST00000486618 MPLKIPQ8TAP9 179 aa4.56□□□□□ -1.68
HDAC3-209ENST00000486618 OCR1Q9BZK8 76 aa4.56□□□□□ -1.68
HDAC3-209ENST00000486618 SND1-IT1Q9HBX3 110 aa4.56□□□□□ -1.68
HDAC3-209ENST00000486618 NOP10Q9NPE3 64 aaKnown RBP4.56□□□□□ -1.68
HDAC3-209ENST00000486618 NXT2Q9NPJ8 142 aaKnown RBP4.56□□□□□ -1.68
HDAC3-209ENST00000486618 TRGV2A0A075B6R0 118 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 LEPROTO15243 131 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 ASB16-AS1Q495Z4 193 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 REG3GQ6UW15 175 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 SOSTDC1Q6X4U4 206 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 TMEM263Q8WUH6 116 aaKnown RBP4.55□□□□□ -1.68
HDAC3-209ENST00000486618 PSENENQ9NZ42 101 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 VPS13BQ7Z7G8 4022 aa4.55□□□□□ -1.68
HDAC3-209ENST00000486618 MYCBP2O75592 4640 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 A0A087WTM6 91 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 NDUFC1O43677 76 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 UBE2G1P62253 170 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 PATE2Q6UY27 113 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 CYP2G1PQ6ZSU1 146 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 CLEC2BQ92478 149 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 RPL36ALQ969Q0 106 aaKnown RBP4.54□□□□□ -1.68
HDAC3-209ENST00000486618 LINC01600Q96MT4 127 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 SCGB3A1Q96QR1 104 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 SLC50A1Q9BRV3 221 aa4.54□□□□□ -1.68
HDAC3-209ENST00000486618 IGKV1D-37A0A075B6S9 117 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 A0A087X002 238 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 RPL37AP8A6NKH3 93 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 KRTAP29-1A8MX34 341 aaPredicted RBP4.53□□□□□ -1.68
HDAC3-209ENST00000486618 IBA57-AS1B1ANH7 110 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 F2Z2F3 143 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 COX8AP10176 69 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 LCE1AQ5T7P2 110 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 ORMDL3Q8N138 153 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 LINC00612Q8N6U2 182 aa4.53□□□□□ -1.68
HDAC3-209ENST00000486618 A0A096LPF7 62 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 CCKP06307 115 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 DNAH10OSP0CZ25 163 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 TMEM170BQ5T4T1 132 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 FAM104BQ5XKR9 115 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 DEFB104AQ8WTQ1 72 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 ODF3Q96PU9 254 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 MANBALQ9NQG1 85 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 TIMM9Q9Y5J7 89 aa4.52□□□□□ -1.69
HDAC3-209ENST00000486618 IGLV5-39A0A0G2JS06 123 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 A6NN06 94 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 H3BRN7 92 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 C10orf113Q5VZT2 155 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 RPL7L1Q6DKI1 246 aaKnown RBP4.51□□□□□ -1.69
HDAC3-209ENST00000486618 Q6ZRP5 223 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 PRAC1Q96KF2 57 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 ICOSQ9Y6W8 199 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 FAT1Q14517 4588 aa4.51□□□□□ -1.69
HDAC3-209ENST00000486618 TRGV1A0A0A0MS02 117 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 PMS2P5A8MQ11 134 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 PSCAO43653 123 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 C3orf79P0CE67 100 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 HAMPP81172 84 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 RHOHQ15669 191 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 ZFP2Q6ZN57 461 aa4.5□□□□□ -1.69
HDAC3-209ENST00000486618 MRPL35Q9NZE8 188 aaKnown RBP4.5□□□□□ -1.69
HDAC3-209ENST00000486618 IGKV1OR2-108A0A075B7D4 117 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 TRAV12-3A0A0B4J271 114 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 TRGV4A0A0C4DH28 118 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 IGHV1-24A0A0C4DH33 117 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 RBM3P98179 157 aaKnown RBP4.49□□□□□ -1.69
HDAC3-209ENST00000486618 Q1T7F1 81 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 Q6ZTI0 123 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 LINC00643Q86TS7 51 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 CHCHD1Q96BP2 118 aaKnown RBP4.49□□□□□ -1.69
HDAC3-209ENST00000486618 CAMK2N2Q96S95 79 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 LINC00467Q9BRT7 94 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 TRAPPC1Q9Y5R8 145 aa4.49□□□□□ -1.69
HDAC3-209ENST00000486618 IGLV4-3A0A075B6K6 122 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 IGHV3-16A0A0C4DH30 117 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 KRTAP4-16G5E9R7 235 aaPredicted RBP4.48□□□□□ -1.69
HDAC3-209ENST00000486618 BCE1O60756 84 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 SERF1AO75920 110 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 IGKV2-30P06310 120 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 MRPL51Q4U2R6 128 aaKnown RBP4.48□□□□□ -1.69
HDAC3-209ENST00000486618 SPANXN1Q5VSR9 72 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 LYPD5Q6UWN5 251 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 C2orf66Q6UXQ4 117 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 C2orf91Q6ZV80 131 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 BAGE3Q86Y29 109 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 BAGE2Q86Y30 109 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 CYB561D1Q8N8Q1 229 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 HIGD1BQ9P298 99 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 PRO0255Q9UI72 69 aa4.48□□□□□ -1.69
HDAC3-209ENST00000486618 TSPEAR-AS2P59090 65 aa4.47□□□□□ -1.69
HDAC3-209ENST00000486618 C10orf25Q5T742 122 aa4.47□□□□□ -1.69
HDAC3-209ENST00000486618 TXNDC17Q9BRA2 123 aa4.47□□□□□ -1.69
HDAC3-209ENST00000486618 PHLDA3Q9Y5J5 127 aa4.47□□□□□ -1.69
HDAC3-209ENST00000486618 IGLV8-61A0A075B6I0 122 aa4.46□□□□□ -1.7
HDAC3-209ENST00000486618 K7ERS5 55 aa4.46□□□□□ -1.7
HDAC3-209ENST00000486618 IGHV3-53P01767 116 aa4.46□□□□□ -1.7
HDAC3-209ENST00000486618 APCSP02743 223 aa4.46□□□□□ -1.7
HDAC3-209ENST00000486618 PRB4P10163 310 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms