RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 Q6ZRU5 148 aa10.97□□□□□ -0.65
VIM-205ENST00000485947 C9orf163Q8N9P6 203 aa10.97□□□□□ -0.65
VIM-205ENST00000485947 HIST1H4GQ99525 98 aa10.97□□□□□ -0.65
VIM-205ENST00000485947 SMIM13P0DJ93 91 aa10.96□□□□□ -0.65
VIM-205ENST00000485947 SRSF9Q13242 221 aaKnown RBP eCLIP10.96□□□□□ -0.65
VIM-205ENST00000485947 CARD19Q96LW7 228 aa10.96□□□□□ -0.65
VIM-205ENST00000485947 C6orf48Q9UBA6 75 aa10.96□□□□□ -0.65
VIM-205ENST00000485947 FAT1Q14517 4588 aa10.95□□□□□ -0.66
VIM-205ENST00000485947 CNBPP62633 177 aaKnown RBP10.95□□□□□ -0.66
VIM-205ENST00000485947 HAMPP81172 84 aa10.95□□□□□ -0.66
VIM-205ENST00000485947 SCXQ7RTU7 201 aa10.95□□□□□ -0.66
VIM-205ENST00000485947 COPS9Q8WXC6 57 aa10.95□□□□□ -0.66
VIM-205ENST00000485947 IFITM1P13164 125 aa10.94□□□□□ -0.66
VIM-205ENST00000485947 LINC00158P58513 81 aa10.94□□□□□ -0.66
VIM-205ENST00000485947 LINC01620Q4KN68 170 aa10.94□□□□□ -0.66
VIM-205ENST00000485947 PPDPFQ9H3Y8 114 aa10.94□□□□□ -0.66
VIM-205ENST00000485947 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.93□□□□□ -0.66
VIM-205ENST00000485947 M0R143 59 aa10.93□□□□□ -0.66
VIM-205ENST00000485947 PFN2P35080 140 aa10.93□□□□□ -0.66
VIM-205ENST00000485947 PTTG1IPP53801 180 aa10.93□□□□□ -0.66
VIM-205ENST00000485947 ADAMTSL4-AS1Q5T5F5 129 aa10.93□□□□□ -0.66
VIM-205ENST00000485947 LINC00528Q8N1L1 170 aa10.93□□□□□ -0.66
VIM-205ENST00000485947 VPS13BQ7Z7G8 4022 aa10.92□□□□□ -0.66
VIM-205ENST00000485947 A0A0U1RRA0 63 aa10.92□□□□□ -0.66
VIM-205ENST00000485947 CEND1Q8N111 149 aa10.92□□□□□ -0.66
VIM-205ENST00000485947 MIR7-3HGQ8N6C7 128 aa10.92□□□□□ -0.66
VIM-205ENST00000485947 CIRBP-AS1Q8TBR5 109 aa10.92□□□□□ -0.66
VIM-205ENST00000485947 SLPIP03973 132 aa10.91□□□□□ -0.66
VIM-205ENST00000485947 C9orf116Q5BN46 136 aaPredicted RBP10.91□□□□□ -0.66
VIM-205ENST00000485947 TLX1NBP0CAT3 122 aa10.9□□□□□ -0.66
VIM-205ENST00000485947 DNAH8Q96JB1 4490 aa10.9□□□□□ -0.67
VIM-205ENST00000485947 NDUFC2-KCTD14E9PQ53 114 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 RPL24P83731 157 aaKnown RBP10.89□□□□□ -0.67
VIM-205ENST00000485947 BVES-AS1Q5T3Y7 98 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 SDIM1Q6ZPB5 146 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 MUSTN1Q8IVN3 82 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 DAND5Q8N907 189 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 LINC00308Q8TCZ7 52 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 PKIGQ9Y2B9 76 aa10.89□□□□□ -0.67
VIM-205ENST00000485947 TMEM238LA0A1B0GVL6 79 aa10.88□□□□□ -0.67
VIM-205ENST00000485947 A6NJY4 79 aa10.88□□□□□ -0.67
VIM-205ENST00000485947 HINT1P49773 126 aaPredicted RBP10.88□□□□□ -0.67
VIM-205ENST00000485947 LOC107984156A0A0G2JMH3 177 aa10.87□□□□□ -0.67
VIM-205ENST00000485947 ARL17AQ8IVW1 177 aa10.87□□□□□ -0.67
VIM-205ENST00000485947 LOC107984640A0A0U1RRK4 108 aa10.86□□□□□ -0.67
VIM-205ENST00000485947 FXYD2P54710 66 aa10.85□□□□□ -0.67
VIM-205ENST00000485947 NPC2P61916 151 aa10.85□□□□□ -0.67
VIM-205ENST00000485947 SOSTDC1Q6X4U4 206 aa10.84□□□□□ -0.67
VIM-205ENST00000485947 SND1-IT1Q9HBX3 110 aa10.84□□□□□ -0.67
VIM-205ENST00000485947 A6NDN8 102 aa10.83□□□□□ -0.68
VIM-205ENST00000485947 Q6ZRP5 223 aa10.83□□□□□ -0.68
VIM-205ENST00000485947 SNHG12Q9BXW3 62 aa10.83□□□□□ -0.68
VIM-205ENST00000485947 A4D1N5 150 aa10.82□□□□□ -0.68
VIM-205ENST00000485947 RPL18AQ02543 176 aaKnown RBP10.82□□□□□ -0.68
VIM-205ENST00000485947 BATFQ16520 125 aa10.82□□□□□ -0.68
VIM-205ENST00000485947 EIF4EBP3O60516 100 aaPredicted RBP10.81□□□□□ -0.68
VIM-205ENST00000485947 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.81□□□□□ -0.68
VIM-205ENST00000485947 KRTAP29-1A8MX34 341 aaPredicted RBP10.8□□□□□ -0.68
VIM-205ENST00000485947 NDUFC2O95298 119 aa10.8□□□□□ -0.68
VIM-205ENST00000485947 KRTAP10-4P60372 401 aaPredicted RBP10.8□□□□□ -0.68
VIM-205ENST00000485947 A0A1B0GWB2 263 aa10.79□□□□□ -0.68
VIM-205ENST00000485947 GAGE2EQ4V326 116 aa10.79□□□□□ -0.68
VIM-205ENST00000485947 NHP2Q9NX24 153 aaKnown RBP10.79□□□□□ -0.68
VIM-205ENST00000485947 GAGE2DQ9UEU5 116 aa10.79□□□□□ -0.68
VIM-205ENST00000485947 A0A0B4J2C4 111 aa10.78□□□□□ -0.68
VIM-205ENST00000485947 XAGE1AQ9HD64 81 aa10.78□□□□□ -0.68
VIM-205ENST00000485947 J3QL48 77 aa10.77□□□□□ -0.69
VIM-205ENST00000485947 RPL37AP61513 92 aaKnown RBP10.77□□□□□ -0.69
VIM-205ENST00000485947 SPACA4Q8TDM5 124 aa10.77□□□□□ -0.69
VIM-205ENST00000485947 OXTP01178 125 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 CFC1BP0CG36 223 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 CFC1P0CG37 223 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 GAGE2BQ13066 116 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 COL5A1-AS1Q5SY13 56 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 DPH3Q96FX2 82 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 LINC00474Q9P2X8 69 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 PLA2G2DQ9UNK4 145 aa10.76□□□□□ -0.69
VIM-205ENST00000485947 PANO1I0J062 215 aa10.75□□□□□ -0.69
VIM-205ENST00000485947 LBHQ53QV2 105 aaPredicted RBP10.75□□□□□ -0.69
VIM-205ENST00000485947 C9orf129Q5T035 196 aaKnown RBP10.75□□□□□ -0.69
VIM-205ENST00000485947 RAB37Q96AX2 223 aa10.75□□□□□ -0.69
VIM-205ENST00000485947 PLAC8Q9NZF1 115 aa10.75□□□□□ -0.69
VIM-205ENST00000485947 HMCN2Q8NDA2 5059 aa10.74□□□□□ -0.69
VIM-205ENST00000485947 A0A087WYN8 130 aa10.74□□□□□ -0.69
VIM-205ENST00000485947 A0A096LNI7 61 aa10.74□□□□□ -0.69
VIM-205ENST00000485947 TRAV13-2A0A0B4J235 113 aa10.73□□□□□ -0.69
VIM-205ENST00000485947 IGKV2-28A0A075B6P5 120 aa10.72□□□□□ -0.69
VIM-205ENST00000485947 TRBV10-2A0A0K0K1G8 114 aa10.72□□□□□ -0.69
VIM-205ENST00000485947 IGKV2D-28P01615 120 aa10.72□□□□□ -0.69
VIM-205ENST00000485947 VPREB1P12018 145 aa10.72□□□□□ -0.69
VIM-205ENST00000485947 PRO1854Q9UHT4 67 aa10.72□□□□□ -0.69
VIM-205ENST00000485947 IGLV5-37A0A075B6J1 123 aa10.71□□□□□ -0.69
VIM-205ENST00000485947 K7ERJ3 54 aa10.7□□□□□ -0.7
VIM-205ENST00000485947 Q8NDZ9 215 aa10.7□□□□□ -0.7
VIM-205ENST00000485947 C7orf33Q8WU49 177 aa10.7□□□□□ -0.7
VIM-205ENST00000485947 IGKV2-24A0A0C4DH68 120 aa10.69□□□□□ -0.7
VIM-205ENST00000485947 CHTF8P0CG12 524 aa10.69□□□□□ -0.7
VIM-205ENST00000485947 LINC00337Q8N6G1 96 aa10.69□□□□□ -0.7
VIM-205ENST00000485947 M0R378 163 aa10.68□□□□□ -0.7
VIM-205ENST00000485947 NCR3O14931 201 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms