RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 VPREB1P12018 145 aa7.73□□□□□ -1.17
HDAC1-209ENST00000484305 IGLV1-50A0A075B6I6 118 aa7.72□□□□□ -1.17
HDAC1-209ENST00000484305 IGKV2-28A0A075B6P5 120 aa7.72□□□□□ -1.17
HDAC1-209ENST00000484305 IGKV2D-28P01615 120 aa7.72□□□□□ -1.17
HDAC1-209ENST00000484305 RPL28P46779 137 aaKnown RBP7.72□□□□□ -1.17
HDAC1-209ENST00000484305 Q8NDZ9 215 aa7.72□□□□□ -1.17
HDAC1-209ENST00000484305 A0A0U1RRA0 63 aa7.71□□□□□ -1.18
HDAC1-209ENST00000484305 LINC00158P58513 81 aa7.71□□□□□ -1.18
HDAC1-209ENST00000484305 UBR4Q5T4S7 5183 aa7.71□□□□□ -1.18
HDAC1-209ENST00000484305 FABP4P15090 132 aa7.7□□□□□ -1.18
HDAC1-209ENST00000484305 RPL24P83731 157 aaKnown RBP7.7□□□□□ -1.18
HDAC1-209ENST00000484305 SMIM13P0DJ93 91 aa7.69□□□□□ -1.18
HDAC1-209ENST00000484305 KRTAP13-1Q8IUC0 172 aa7.69□□□□□ -1.18
HDAC1-209ENST00000484305 HSPB8Q9UJY1 196 aa7.69□□□□□ -1.18
HDAC1-209ENST00000484305 A6NJY4 79 aa7.68□□□□□ -1.18
HDAC1-209ENST00000484305 NDUFA12Q9UI09 145 aa7.68□□□□□ -1.18
HDAC1-209ENST00000484305 LRP2P98164 4655 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 TMEM238C9JI98 176 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 PLNP26678 52 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 RPL13AP40429 203 aaKnown RBP7.67□□□□□ -1.18
HDAC1-209ENST00000484305 UBE2AP49459 152 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 TSPEAR-AS2P59090 65 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 MEIG1Q5JSS6 88 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 PMCHL2Q9BQD1 86 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 TMEM126AQ9H061 195 aa7.67□□□□□ -1.18
HDAC1-209ENST00000484305 HERV-K104P63124 156 aa7.66□□□□□ -1.18
HDAC1-209ENST00000484305 MYMXA0A1B0GTQ4 84 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 M0R378 163 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 LEPROTO15243 131 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BKO60814 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 ATP6V1G1O75348 118 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 DPM2O94777 84 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BJP06899 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BOP23527 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BBP33778 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BDP58876 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BCP62807 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 PRLHP81277 87 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST2H2BEQ16778 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.65□□□□□ -1.18
HDAC1-209ENST00000484305 FAM19A1Q7Z5A9 133 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 MIR7-3HGQ8N6C7 128 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BHQ93079 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BNQ99877 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 HIST1H2BMQ99879 126 aa7.65□□□□□ -1.18
HDAC1-209ENST00000484305 A0A087X002 238 aa7.64□□□□□ -1.19
HDAC1-209ENST00000484305 IGKCP01834 107 aa7.64□□□□□ -1.19
HDAC1-209ENST00000484305 BOD1L2Q8IYS8 172 aa7.64□□□□□ -1.19
HDAC1-209ENST00000484305 PLEKHB2Q96CS7 222 aa7.64□□□□□ -1.19
HDAC1-209ENST00000484305 ANAPC11Q9NYG5 84 aa7.64□□□□□ -1.19
HDAC1-209ENST00000484305 J3QQQ9 107 aa7.63□□□□□ -1.19
HDAC1-209ENST00000484305 MAP1LC3CQ9BXW4 147 aa7.63□□□□□ -1.19
HDAC1-209ENST00000484305 LINC00587B1AMM8 73 aa7.62□□□□□ -1.19
HDAC1-209ENST00000484305 CRYGAP11844 174 aa7.62□□□□□ -1.19
HDAC1-209ENST00000484305 NCR3O14931 201 aa7.61□□□□□ -1.19
HDAC1-209ENST00000484305 HERVK_113P61574 105 aa7.61□□□□□ -1.19
HDAC1-209ENST00000484305 DAND5Q8N907 189 aa7.61□□□□□ -1.19
HDAC1-209ENST00000484305 SYS1-DBNDD2H3BUS1 97 aa7.59□□□□□ -1.19
HDAC1-209ENST00000484305 LGALS3P17931 250 aaKnown RBP7.59□□□□□ -1.19
HDAC1-209ENST00000484305 NMUP48645 174 aa7.59□□□□□ -1.19
HDAC1-209ENST00000484305 KRTAP13-2Q52LG2 175 aa7.59□□□□□ -1.19
HDAC1-209ENST00000484305 TYMSOSQ8TAI1 123 aa7.59□□□□□ -1.19
HDAC1-209ENST00000484305 IGKV2D-26A0A0A0MRZ7 120 aa7.58□□□□□ -1.2
HDAC1-209ENST00000484305 LOC107984156A0A0G2JMH3 177 aa7.58□□□□□ -1.2
HDAC1-209ENST00000484305 ARL17AQ8IVW1 177 aa7.58□□□□□ -1.2
HDAC1-209ENST00000484305 PRYO14603 147 aa7.57□□□□□ -1.2
HDAC1-209ENST00000484305 TSPAN13O95857 204 aa7.57□□□□□ -1.2
HDAC1-209ENST00000484305 FAM229BQ4G0N7 80 aa7.57□□□□□ -1.2
HDAC1-209ENST00000484305 HIGD2AQ9BW72 106 aa7.57□□□□□ -1.2
HDAC1-209ENST00000484305 KCNQ1DNQ9H478 68 aa7.57□□□□□ -1.2
HDAC1-209ENST00000484305 LPAP08519 4548 aa7.56□□□□□ -1.2
HDAC1-209ENST00000484305 TRBV10-3A0A0K0K1G6 114 aa7.56□□□□□ -1.2
HDAC1-209ENST00000484305 E9PLD3 99 aa7.56□□□□□ -1.2
HDAC1-209ENST00000484305 LINC01545Q5VT33 79 aa7.56□□□□□ -1.2
HDAC1-209ENST00000484305 A0A0J9YXY3 114 aa7.55□□□□□ -1.2
HDAC1-209ENST00000484305 SPRR1AP35321 89 aa7.55□□□□□ -1.2
HDAC1-209ENST00000484305 PET117Q6UWS5 81 aa7.55□□□□□ -1.2
HDAC1-209ENST00000484305 KRTAP4-16G5E9R7 235 aaPredicted RBP7.54□□□□□ -1.2
HDAC1-209ENST00000484305 EIF4EBP3O60516 100 aaPredicted RBP7.54□□□□□ -1.2
HDAC1-209ENST00000484305 COA6Q5JTJ3 125 aaKnown RBP7.54□□□□□ -1.2
HDAC1-209ENST00000484305 ADAMTSL4-AS1Q5T5F5 129 aa7.54□□□□□ -1.2
HDAC1-209ENST00000484305 LINC00337Q8N6G1 96 aa7.54□□□□□ -1.2
HDAC1-209ENST00000484305 TRBV10-2A0A0K0K1G8 114 aa7.53□□□□□ -1.2
HDAC1-209ENST00000484305 C3orf79P0CE67 100 aa7.53□□□□□ -1.2
HDAC1-209ENST00000484305 NPC2P61916 151 aa7.53□□□□□ -1.2
HDAC1-209ENST00000484305 PRR4Q16378 134 aa7.53□□□□□ -1.2
HDAC1-209ENST00000484305 SOSTDC1Q6X4U4 206 aa7.53□□□□□ -1.2
HDAC1-209ENST00000484305 MIEN1Q9BRT3 115 aa7.53□□□□□ -1.2
HDAC1-209ENST00000484305 ETDCA0A1B0GVM5 59 aa7.52□□□□□ -1.21
HDAC1-209ENST00000484305 DDTP30046 118 aa7.52□□□□□ -1.21
HDAC1-209ENST00000484305 SPRR4Q96PI1 79 aa7.52□□□□□ -1.21
HDAC1-209ENST00000484305 NDUFC2O95298 119 aa7.51□□□□□ -1.21
HDAC1-209ENST00000484305 C3orf22Q8N5N4 141 aa7.51□□□□□ -1.21
HDAC1-209ENST00000484305 SPANXB1Q9NS25 103 aaPredicted RBP7.51□□□□□ -1.21
HDAC1-209ENST00000484305 B5MCH6 92 aa7.5□□□□□ -1.21
HDAC1-209ENST00000484305 KRTDAPP60985 99 aa7.5□□□□□ -1.21
HDAC1-209ENST00000484305 S100A12P80511 92 aa7.5□□□□□ -1.21
HDAC1-209ENST00000484305 LINC00304Q8N9R0 145 aa7.5□□□□□ -1.21
HDAC1-209ENST00000484305 SMCR5Q8TEV8 140 aa7.5□□□□□ -1.21
HDAC1-209ENST00000484305 LITAFQ99732 161 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms