RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 WFDC10AQ9H1F0 79 aa9.15□□□□□ -0.95
USP40-214ENST00000483519 NSD1Q96L73 2696 aaPredicted RBP9.14□□□□□ -0.95
USP40-214ENST00000483519 TRAV7A0A075B6U4 112 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 LOC110117498A0A087WWA1 95 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 VPREB1P12018 145 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 LINC00575Q6W349 94 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 NOTCH3Q9UM47 2321 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 MXRA5Q9NR99 2828 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 CLPSL2Q6UWE3 100 aa9.14□□□□□ -0.95
USP40-214ENST00000483519 TEP1Q99973 2627 aaKnown RBP9.14□□□□□ -0.95
USP40-214ENST00000483519 GYPEP15421 78 aa9.13□□□□□ -0.95
USP40-214ENST00000483519 C16orf95Q9H693 158 aa9.13□□□□□ -0.95
USP40-214ENST00000483519 HRCT1Q6UXD1 115 aa9.13□□□□□ -0.95
USP40-214ENST00000483519 IGHV4-28A0A0C4DH34 117 aa9.12□□□□□ -0.95
USP40-214ENST00000483519 DEFB130BP0DP73 79 aa9.12□□□□□ -0.95
USP40-214ENST00000483519 DEFB130AP0DP74 79 aa9.12□□□□□ -0.95
USP40-214ENST00000483519 KIAA0087Q14695 138 aa9.12□□□□□ -0.95
USP40-214ENST00000483519 LAMTOR3Q9UHA4 124 aa9.12□□□□□ -0.95
USP40-214ENST00000483519 CD164L2Q6UWJ8 174 aa9.11□□□□□ -0.95
USP40-214ENST00000483519 C6orf223Q8N319 242 aa9.11□□□□□ -0.95
USP40-214ENST00000483519 C19orf73Q9NVV2 129 aa9.11□□□□□ -0.95
USP40-214ENST00000483519 SERP1Q9Y6X1 66 aa9.11□□□□□ -0.95
USP40-214ENST00000483519 ZNF469Q96JG9 3925 aaPredicted RBP9.11□□□□□ -0.95
USP40-214ENST00000483519 LINC01547P58512 204 aaPredicted RBP9.11□□□□□ -0.95
USP40-214ENST00000483519 LINC00482Q8N8I6 264 aa9.11□□□□□ -0.95
USP40-214ENST00000483519 H3BQ85 93 aa9.1□□□□□ -0.95
USP40-214ENST00000483519 PDE6GP18545 87 aa9.1□□□□□ -0.95
USP40-214ENST00000483519 WNK1Q9H4A3 2382 aa9.1□□□□□ -0.95
USP40-214ENST00000483519 H7BZZ5 65 aa9.1□□□□□ -0.95
USP40-214ENST00000483519 DNAJC9-AS1A6NH13 148 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 IGLV1-51P01701 117 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 HAMPP81172 84 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 KLKP1Q107X0 134 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 C1orf195Q5TG92 126 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 Q6ZVQ6 151 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 MUC7Q8TAX7 377 aa9.09□□□□□ -0.95
USP40-214ENST00000483519 CHCHD10Q8WYQ3 142 aaPredicted RBP9.08□□□□□ -0.96
USP40-214ENST00000483519 CXCL6P80162 114 aa9.08□□□□□ -0.96
USP40-214ENST00000483519 C9orf116Q5BN46 136 aaPredicted RBP9.08□□□□□ -0.96
USP40-214ENST00000483519 LINC00269Q8N2A0 174 aa9.08□□□□□ -0.96
USP40-214ENST00000483519 LINC00612Q8N6U2 182 aa9.08□□□□□ -0.96
USP40-214ENST00000483519 EPM2AB3EWF7 344 aa9.07□□□□□ -0.96
USP40-214ENST00000483519 PRO0255Q9UI72 69 aa9.07□□□□□ -0.96
USP40-214ENST00000483519 C9orf66Q5T8R8 295 aa9.06□□□□□ -0.96
USP40-214ENST00000483519 Q8NDZ9 215 aa9.06□□□□□ -0.96
USP40-214ENST00000483519 ESM1Q9NQ30 184 aa9.06□□□□□ -0.96
USP40-214ENST00000483519 A0A096LPF7 62 aa9.05□□□□□ -0.96
USP40-214ENST00000483519 IGLV10-54A0A075B6I4 117 aa9.04□□□□□ -0.96
USP40-214ENST00000483519 ANGP03950 147 aaKnown RBP9.04□□□□□ -0.96
USP40-214ENST00000483519 REG3AQ06141 175 aa9.04□□□□□ -0.96
USP40-214ENST00000483519 M0R2N4 97 aa9.04□□□□□ -0.96
USP40-214ENST00000483519 Q6ZQY7 126 aa9.04□□□□□ -0.96
USP40-214ENST00000483519 TRAV10A0A0B4J240 114 aa9.03□□□□□ -0.96
USP40-214ENST00000483519 IGLV6-57P01721 117 aa9.03□□□□□ -0.96
USP40-214ENST00000483519 JMJD1CQ15652 2540 aa9.03□□□□□ -0.96
USP40-214ENST00000483519 NDUFC1O43677 76 aa9.02□□□□□ -0.97
USP40-214ENST00000483519 SPAG11BQ08648 103 aa9.02□□□□□ -0.97
USP40-214ENST00000483519 C11orf45Q8TAV5 145 aa9.02□□□□□ -0.97
USP40-214ENST00000483519 SNURFQ9Y675 71 aa9.02□□□□□ -0.97
USP40-214ENST00000483519 LINC01006Q8NI28 216 aa9.01□□□□□ -0.97
USP40-214ENST00000483519 SETD2Q9BYW2 2564 aaPredicted RBP9.01□□□□□ -0.97
USP40-214ENST00000483519 Q8N3U1 123 aa9.01□□□□□ -0.97
USP40-214ENST00000483519 RMI2Q96E14 147 aa9.01□□□□□ -0.97
USP40-214ENST00000483519 F8WEM9 126 aa9□□□□□ -0.97
USP40-214ENST00000483519 ANK3Q12955 4377 aaKnown RBP9□□□□□ -0.97
USP40-214ENST00000483519 A0A0J9YWU9 116 aa9□□□□□ -0.97
USP40-214ENST00000483519 IGHV4-30-4P0DP06 118 aa9□□□□□ -0.97
USP40-214ENST00000483519 UNQ6190/PRO20217Q6UXQ8 127 aa9□□□□□ -0.97
USP40-214ENST00000483519 DIRC1Q969H9 104 aa9□□□□□ -0.97
USP40-214ENST00000483519 SPATA3Q8NHX4 192 aa8.99□□□□□ -0.97
USP40-214ENST00000483519 SMIM26A0A096LP01 95 aa8.99□□□□□ -0.97
USP40-214ENST00000483519 ATP5EP56381 51 aaPredicted RBP8.99□□□□□ -0.97
USP40-214ENST00000483519 C10orf25Q5T742 122 aa8.99□□□□□ -0.97
USP40-214ENST00000483519 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.99□□□□□ -0.97
USP40-214ENST00000483519 TRBV7-4A0A0J9YYF1 115 aa8.98□□□□□ -0.97
USP40-214ENST00000483519 NIPBLQ6KC79 2804 aaeCLIP8.98□□□□□ -0.97
USP40-214ENST00000483519 X6R8D5 127 aa8.97□□□□□ -0.97
USP40-214ENST00000483519 LYRM9A8MSI8 78 aa8.97□□□□□ -0.97
USP40-214ENST00000483519 KRTAP21-3Q3LHN1 58 aa8.97□□□□□ -0.97
USP40-214ENST00000483519 KRTAP24-1Q3LI83 254 aa8.96□□□□□ -0.97
USP40-214ENST00000483519 TM2D3Q9BRN9 247 aa8.96□□□□□ -0.98
USP40-214ENST00000483519 COX7BP24311 80 aa8.95□□□□□ -0.98
USP40-214ENST00000483519 PRR26Q8N8Z3 221 aa8.95□□□□□ -0.98
USP40-214ENST00000483519 GVQW2A0A096LPI5 108 aaPredicted RBP8.95□□□□□ -0.98
USP40-214ENST00000483519 ZNF73O43830 326 aaPredicted RBP8.95□□□□□ -0.98
USP40-214ENST00000483519 MIFP14174 115 aa8.95□□□□□ -0.98
USP40-214ENST00000483519 CD164Q04900 197 aa8.95□□□□□ -0.98
USP40-214ENST00000483519 SCXQ7RTU7 201 aa8.95□□□□□ -0.98
USP40-214ENST00000483519 NREPQ16612 68 aa8.94□□□□□ -0.98
USP40-214ENST00000483519 TRBV7-6A0A0J9YX20 115 aa8.93□□□□□ -0.98
USP40-214ENST00000483519 ELOF1P60002 83 aaKnown RBP8.93□□□□□ -0.98
USP40-214ENST00000483519 ERC2-IT1O76042 136 aa8.93□□□□□ -0.98
USP40-214ENST00000483519 CUBNO60494 3623 aa8.93□□□□□ -0.98
USP40-214ENST00000483519 FP248Q71RG6 208 aaPredicted RBP8.92□□□□□ -0.98
USP40-214ENST00000483519 BPY2O14599 106 aa8.92□□□□□ -0.98
USP40-214ENST00000483519 TMEM254Q8TBM7 123 aa8.91□□□□□ -0.98
USP40-214ENST00000483519 ATRQ13535 2644 aa8.91□□□□□ -0.98
USP40-214ENST00000483519 NF1P21359 2839 aa8.91□□□□□ -0.98
USP40-214ENST00000483519 XAGE1AQ9HD64 81 aa8.9□□□□□ -0.98
USP40-214ENST00000483519 C6orf48Q9UBA6 75 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms