RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C1orf158Q8N1D5 194 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 DSCR8Q96T75 97 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 RHPN1-AS1Q9BWJ2 59 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 SND1-IT1Q9HBX3 110 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 POLEQ07864 2286 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 PKDREJQ9NTG1 2253 aa3.33□□□□□ -1.88
USP40-213ENST00000483216 UBR5O95071 2799 aaPredicted RBP3.32□□□□□ -1.88
USP40-213ENST00000483216 TENM4Q6N022 2769 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 IGHV3-64A0A075B6Q5 118 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 LOC110117498A0A087WWA1 95 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 TRBV7-6A0A0J9YX20 115 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 A0A0U1RQV1 116 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 J3QLI3 93 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 NDUFB1O75438 58 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 IGHV3-53P01767 116 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 C4orf26Q17RF5 130 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 Q5XG85 94 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 C20orf197Q8N268 126 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 SMCR5Q8TEV8 140 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 BSNQ9UPA5 3926 aa3.32□□□□□ -1.88
USP40-213ENST00000483216 PLAC8L1A1L4L8 177 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 CCL21O00585 134 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 MIFP14174 115 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 UBE2AP49459 152 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 MOBPQ13875 183 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 LINC01560Q8TB33 94 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 ZNF625Q96I27 306 aaPredicted RBP3.31□□□□□ -1.88
USP40-213ENST00000483216 LINC00846Q9NV44 126 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 SPENQ96T58 3664 aaKnown RBP3.31□□□□□ -1.88
USP40-213ENST00000483216 COL12A1Q99715 3063 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 MYO18BQ8IUG5 2567 aa3.31□□□□□ -1.88
USP40-213ENST00000483216 MALRD1Q5VYJ5 2156 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 IGKV3D-7A0A0C4DH55 119 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 LINC00158P58513 81 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 PRR9Q5T870 116 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 PRR15Q8IV56 129 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 C3orf56Q8N813 242 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 C5orf56Q8N8D9 126 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 COX7B2Q8TF08 81 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 BRK1Q8WUW1 75 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 C14orf132Q9NPU4 83 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 ASH1LQ9NR48 2969 aaKnown RBP3.3□□□□□ -1.88
USP40-213ENST00000483216 CDKN2A-AS1Q9UH64 79 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 FLNCQ14315 2725 aa3.3□□□□□ -1.88
USP40-213ENST00000483216 ANKHD1Q8IWZ3 2542 aaKnown RBP3.3□□□□□ -1.88
USP40-213ENST00000483216 FLNBO75369 2602 aaKnown RBP3.29□□□□□ -1.88
USP40-213ENST00000483216 IGHV3-66A0A0C4DH42 116 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 TRBV6-4A0A1B0GX49 114 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 LYNX1G3V0Z9 82 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 H7BZZ5 65 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 LECT2O14960 151 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 TRBV12-3P01733 135 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 LYNX1P0DP58 116 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 CD164Q04900 197 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 PMAIP1Q13794 54 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 ESRGQ1W209 222 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 DEFB114Q30KQ6 69 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 Q8N814 137 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 CHCHD7Q9BUK0 85 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 S4R3C0 116 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 NAV3Q8IVL0 2385 aa3.29□□□□□ -1.88
USP40-213ENST00000483216 PLXNB1O43157 2135 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 TRAV23DV6A0A075B6W5 121 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 ENHOQ6UWT2 76 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 LINC00336Q6ZUF6 198 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 SMIM11BQ8TCY0 68 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 ADGRG4Q8IZF6 3080 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 ABCA4P78363 2273 aa3.28□□□□□ -1.88
USP40-213ENST00000483216 NBASA2RRP1 2371 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 A8MTW9 85 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 FUSP35637 526 aaKnown RBP eCLIP3.27□□□□□ -1.89
USP40-213ENST00000483216 SS18Q15532 418 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 Q6ZRU5 148 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 MIR7-3HGQ8N6C7 128 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 CDC42SE2Q9NRR3 84 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 RELNP78509 3460 aa3.27□□□□□ -1.89
USP40-213ENST00000483216 SETXQ7Z333 2677 aaKnown RBP3.26□□□□□ -1.89
USP40-213ENST00000483216 IGHV3OR16-8A0A075B7F1 116 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 IGHV3-74A0A0B4J1X5 117 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 F8WEM9 126 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 DAD1P61803 113 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 HAMPP81172 84 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 PRB3Q04118 309 aaPredicted RBP3.26□□□□□ -1.89
USP40-213ENST00000483216 LY6EQ16553 131 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 Q1T7F1 81 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.26□□□□□ -1.89
USP40-213ENST00000483216 MRPL55Q7Z7F7 128 aaKnown RBP3.26□□□□□ -1.89
USP40-213ENST00000483216 Q8IZM0 81 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 Q8N2B8 174 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 TMEM254Q8TBM7 123 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 USP9YO00507 2555 aaPredicted RBP3.26□□□□□ -1.89
USP40-213ENST00000483216 CELSR2Q9HCU4 2923 aa3.26□□□□□ -1.89
USP40-213ENST00000483216 UTP20O75691 2785 aaKnown RBP3.25□□□□□ -1.89
USP40-213ENST00000483216 LRRK2Q5S007 2527 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 ARHGAP32A7KAX9 2087 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.25□□□□□ -1.89
USP40-213ENST00000483216 IGHV3-49A0A0A0MS15 119 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 IGKV2-29A2NJV5 120 aaPredicted RBP3.25□□□□□ -1.89
USP40-213ENST00000483216 G3V318 75 aa3.25□□□□□ -1.89
USP40-213ENST00000483216 NCR3O14931 201 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms