RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM19A5Q7Z5A7 132 aaPredicted RBP7.74□□□□□ -1.17
SDC1-206ENST00000482879 CIRBP-AS1Q8TBR5 109 aa7.74□□□□□ -1.17
SDC1-206ENST00000482879 MIEN1Q9BRT3 115 aa7.74□□□□□ -1.17
SDC1-206ENST00000482879 SPANXDQ9BXN6 97 aa7.74□□□□□ -1.17
SDC1-206ENST00000482879 PRO1933Q9H354 126 aa7.74□□□□□ -1.17
SDC1-206ENST00000482879 SPANXCQ9NY87 97 aa7.74□□□□□ -1.17
SDC1-206ENST00000482879 PLAC8Q9NZF1 115 aa7.74□□□□□ -1.17
SDC1-206ENST00000482879 LOC107984156A0A0G2JMH3 177 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 XGP55808 180 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 SERTAD4-AS1Q5TG53 156 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 SOSTDC1Q6X4U4 206 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 Q6ZVH6 145 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 ARL17AQ8IVW1 177 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 LINC00518Q8N0U6 118 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 LINC00308Q8TCZ7 52 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 UQCR10Q9UDW1 63 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 PLA2G2DQ9UNK4 145 aa7.73□□□□□ -1.17
SDC1-206ENST00000482879 EPPK1P58107 5090 aaKnown RBP7.72□□□□□ -1.17
SDC1-206ENST00000482879 EIF4EBP3O60516 100 aaPredicted RBP7.72□□□□□ -1.17
SDC1-206ENST00000482879 RPL24P83731 157 aaKnown RBP7.72□□□□□ -1.17
SDC1-206ENST00000482879 SPANXB1Q9NS25 103 aaPredicted RBP7.72□□□□□ -1.17
SDC1-206ENST00000482879 HIGD1BQ9P298 99 aa7.72□□□□□ -1.17
SDC1-206ENST00000482879 IFITM1P13164 125 aa7.71□□□□□ -1.18
SDC1-206ENST00000482879 C2orf91Q6ZV80 131 aa7.71□□□□□ -1.18
SDC1-206ENST00000482879 KRTAP7-1Q8IUC3 87 aa7.71□□□□□ -1.18
SDC1-206ENST00000482879 MUSTN1Q8IVN3 82 aa7.71□□□□□ -1.18
SDC1-206ENST00000482879 COPS9Q8WXC6 57 aa7.71□□□□□ -1.18
SDC1-206ENST00000482879 EPM2AB3EWF7 344 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 CDK2AP2O75956 126 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 VPREB1P12018 145 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 NKAPP1Q8N9T2 125 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 Q8NDZ9 215 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 HIST1H4GQ99525 98 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 C22orf24Q9Y442 160 aa7.7□□□□□ -1.18
SDC1-206ENST00000482879 IGLV5-37A0A075B6J1 123 aa7.69□□□□□ -1.18
SDC1-206ENST00000482879 M0QXV9 152 aa7.69□□□□□ -1.18
SDC1-206ENST00000482879 PRR3P79522 188 aaKnown RBP7.69□□□□□ -1.18
SDC1-206ENST00000482879 PHF5AQ7RTV0 110 aaKnown RBP7.69□□□□□ -1.18
SDC1-206ENST00000482879 TSTD3H0UI37 97 aa7.67□□□□□ -1.18
SDC1-206ENST00000482879 NCR3O14931 201 aa7.67□□□□□ -1.18
SDC1-206ENST00000482879 NDUFC2O95298 119 aa7.67□□□□□ -1.18
SDC1-206ENST00000482879 HNRNPA3P51991 378 aaKnown RBP7.67□□□□□ -1.18
SDC1-206ENST00000482879 LBHQ53QV2 105 aaPredicted RBP7.67□□□□□ -1.18
SDC1-206ENST00000482879 MRPL55Q7Z7F7 128 aaKnown RBP7.67□□□□□ -1.18
SDC1-206ENST00000482879 PPDPFQ9H3Y8 114 aa7.67□□□□□ -1.18
SDC1-206ENST00000482879 GAGE10A6NGK3 116 aa7.66□□□□□ -1.18
SDC1-206ENST00000482879 M0R378 163 aa7.66□□□□□ -1.18
SDC1-206ENST00000482879 SMR3BP02814 79 aaPredicted RBP7.66□□□□□ -1.18
SDC1-206ENST00000482879 TAL2Q16559 108 aa7.66□□□□□ -1.18
SDC1-206ENST00000482879 C7orf33Q8WU49 177 aa7.66□□□□□ -1.18
SDC1-206ENST00000482879 LINC00167Q96N53 147 aa7.66□□□□□ -1.18
SDC1-206ENST00000482879 APOBP04114 4563 aaKnown RBP7.66□□□□□ -1.18
SDC1-206ENST00000482879 UBE2BP63146 152 aa7.65□□□□□ -1.18
SDC1-206ENST00000482879 TRBV10-2A0A0K0K1G8 114 aa7.64□□□□□ -1.19
SDC1-206ENST00000482879 HSD52Q0P140 79 aa7.64□□□□□ -1.19
SDC1-206ENST00000482879 IGKV2-28A0A075B6P5 120 aa7.63□□□□□ -1.19
SDC1-206ENST00000482879 A4D1N5 150 aa7.63□□□□□ -1.19
SDC1-206ENST00000482879 RPL37AP8A6NKH3 93 aa7.63□□□□□ -1.19
SDC1-206ENST00000482879 IGKV2D-28P01615 120 aa7.63□□□□□ -1.19
SDC1-206ENST00000482879 CEND1Q8N111 149 aa7.63□□□□□ -1.19
SDC1-206ENST00000482879 S100A7L2Q5SY68 101 aa7.62□□□□□ -1.19
SDC1-206ENST00000482879 LINC00528Q8N1L1 170 aa7.62□□□□□ -1.19
SDC1-206ENST00000482879 IGLV1-50A0A075B6I6 118 aa7.61□□□□□ -1.19
SDC1-206ENST00000482879 TRBV10-3A0A0K0K1G6 114 aa7.61□□□□□ -1.19
SDC1-206ENST00000482879 DDTP30046 118 aa7.61□□□□□ -1.19
SDC1-206ENST00000482879 KRTAP11-1Q8IUC1 163 aa7.61□□□□□ -1.19
SDC1-206ENST00000482879 OR13C6PQ8NH95 151 aa7.61□□□□□ -1.19
SDC1-206ENST00000482879 CTAG1AP78358 180 aa7.6□□□□□ -1.19
SDC1-206ENST00000482879 LINC00337Q8N6G1 96 aa7.6□□□□□ -1.19
SDC1-206ENST00000482879 A6NDN8 102 aa7.59□□□□□ -1.19
SDC1-206ENST00000482879 IGLV6-57P01721 117 aa7.59□□□□□ -1.19
SDC1-206ENST00000482879 FXYD2P54710 66 aa7.59□□□□□ -1.19
SDC1-206ENST00000482879 PSORS1C2Q9UIG4 136 aa7.59□□□□□ -1.19
SDC1-206ENST00000482879 BIRC6Q9NR09 4857 aa7.58□□□□□ -1.2
SDC1-206ENST00000482879 TRAV13-2A0A0B4J235 113 aa7.58□□□□□ -1.2
SDC1-206ENST00000482879 TMEM238LA0A1B0GVL6 79 aa7.58□□□□□ -1.2
SDC1-206ENST00000482879 A6NJY4 79 aa7.58□□□□□ -1.2
SDC1-206ENST00000482879 FAM229AH3BQW9 127 aa7.58□□□□□ -1.2
SDC1-206ENST00000482879 RPL37AP61513 92 aaKnown RBP7.58□□□□□ -1.2
SDC1-206ENST00000482879 TMEM126AQ9H061 195 aa7.58□□□□□ -1.2
SDC1-206ENST00000482879 KIAA1109Q2LD37 5005 aa7.57□□□□□ -1.2
SDC1-206ENST00000482879 HSPG2P98160 4391 aa7.57□□□□□ -1.2
SDC1-206ENST00000482879 CFC1BP0CG36 223 aa7.57□□□□□ -1.2
SDC1-206ENST00000482879 CFC1P0CG37 223 aa7.57□□□□□ -1.2
SDC1-206ENST00000482879 KCNQ1DNQ9H478 68 aa7.57□□□□□ -1.2
SDC1-206ENST00000482879 RYR1P21817 5038 aa7.56□□□□□ -1.2
SDC1-206ENST00000482879 PRYO14603 147 aa7.56□□□□□ -1.2
SDC1-206ENST00000482879 HINT1P49773 126 aaPredicted RBP7.56□□□□□ -1.2
SDC1-206ENST00000482879 C1orf137Q5JT78 98 aa7.56□□□□□ -1.2
SDC1-206ENST00000482879 BVES-AS1Q5T3Y7 98 aa7.56□□□□□ -1.2
SDC1-206ENST00000482879 REG3GQ6UW15 175 aa7.56□□□□□ -1.2
SDC1-206ENST00000482879 RAB37Q96AX2 223 aa7.56□□□□□ -1.2
SDC1-206ENST00000482879 TRAV23DV6A0A075B6W5 121 aa7.55□□□□□ -1.2
SDC1-206ENST00000482879 A0A0B4J2C4 111 aa7.55□□□□□ -1.2
SDC1-206ENST00000482879 M0R143 59 aa7.55□□□□□ -1.2
SDC1-206ENST00000482879 Q8N1X5 172 aa7.55□□□□□ -1.2
SDC1-206ENST00000482879 NHP2Q9NX24 153 aaKnown RBP7.55□□□□□ -1.2
SDC1-206ENST00000482879 CBY1Q9Y3M2 126 aa7.55□□□□□ -1.2
SDC1-206ENST00000482879 PLA2G1BP04054 148 aaKnown RBP7.54□□□□□ -1.2
SDC1-206ENST00000482879 RPL13AP40429 203 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms