RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 COA5Q86WW8 74 aa2.09□□□□□ -2.07
VPS41-212ENST00000482217 ACYP2P14621 99 aa2.08□□□□□ -2.08
VPS41-212ENST00000482217 TRBV6-1A0A0K0K1D8 114 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 M0R2N4 97 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 DEFB112Q30KQ8 113 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 OBSCN-AS1Q96MR7 158 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 GAFA1Q96PS6 74 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 TXNDC17Q9BRA2 123 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 ICE1Q9Y2F5 2266 aa2.07□□□□□ -2.08
VPS41-212ENST00000482217 ANKRD17O75179 2603 aaKnown RBP2.06□□□□□ -2.08
VPS41-212ENST00000482217 TOGARAM1Q9Y4F4 1720 aa2.06□□□□□ -2.08
VPS41-212ENST00000482217 PLXNB2O15031 1838 aa2.06□□□□□ -2.08
VPS41-212ENST00000482217 NDUFB1O75438 58 aa2.06□□□□□ -2.08
VPS41-212ENST00000482217 PRR9Q5T870 116 aa2.06□□□□□ -2.08
VPS41-212ENST00000482217 CCL19Q99731 98 aa2.06□□□□□ -2.08
VPS41-212ENST00000482217 KMT2BQ9UMN6 2715 aaPredicted RBP2.06□□□□□ -2.08
VPS41-212ENST00000482217 TNCP24821 2201 aa2.06□□□□□ -2.08
VPS41-212ENST00000482217 COX17Q14061 63 aa2.05□□□□□ -2.08
VPS41-212ENST00000482217 ABRACLQ9P1F3 81 aa2.05□□□□□ -2.08
VPS41-212ENST00000482217 QSER1Q2KHR3 1735 aa2.05□□□□□ -2.08
VPS41-212ENST00000482217 CAV3P56539 151 aa2.04□□□□□ -2.08
VPS41-212ENST00000482217 TECTAO75443 2155 aa2.03□□□□□ -2.08
VPS41-212ENST00000482217 A0A1B0GU69 56 aa2.03□□□□□ -2.08
VPS41-212ENST00000482217 G3V318 75 aa2.03□□□□□ -2.08
VPS41-212ENST00000482217 KRTAP5-5Q701N2 237 aaPredicted RBP2.03□□□□□ -2.08
VPS41-212ENST00000482217 LRRC37A2A6NM11 1700 aa2.03□□□□□ -2.09
VPS41-212ENST00000482217 DDX60Q8IY21 1712 aaKnown RBP2.03□□□□□ -2.09
VPS41-212ENST00000482217 SSC5DA1L4H1 1573 aa2.02□□□□□ -2.09
VPS41-212ENST00000482217 M0R1W7 72 aa2.02□□□□□ -2.09
VPS41-212ENST00000482217 NDUFA4O00483 81 aa2.02□□□□□ -2.09
VPS41-212ENST00000482217 UBL5Q9BZL1 73 aa2.02□□□□□ -2.09
VPS41-212ENST00000482217 COL4A4P53420 1690 aaPredicted RBP2.02□□□□□ -2.09
VPS41-212ENST00000482217 ASXL3Q9C0F0 2248 aa2.01□□□□□ -2.09
VPS41-212ENST00000482217 IGKV2-24A0A0C4DH68 120 aa2.01□□□□□ -2.09
VPS41-212ENST00000482217 SMIM27A0A1W2PRY6 76 aa2.01□□□□□ -2.09
VPS41-212ENST00000482217 ARL14EPLP0DKL9 152 aa2.01□□□□□ -2.09
VPS41-212ENST00000482217 Q6ZQY7 126 aa2.01□□□□□ -2.09
VPS41-212ENST00000482217 EP400Q96L91 3159 aa2□□□□□ -2.09
VPS41-212ENST00000482217 IGIPA6NJ69 53 aa2□□□□□ -2.09
VPS41-212ENST00000482217 C4AP0C0L4 1744 aa2□□□□□ -2.09
VPS41-212ENST00000482217 C4BP0C0L5 1744 aa2□□□□□ -2.09
VPS41-212ENST00000482217 A0A096LNT2 108 aa1.99□□□□□ -2.09
VPS41-212ENST00000482217 SPRR5A0A1B0GTR4 108 aa1.99□□□□□ -2.09
VPS41-212ENST00000482217 I3L3M4 83 aa1.99□□□□□ -2.09
VPS41-212ENST00000482217 COX7BP24311 80 aa1.99□□□□□ -2.09
VPS41-212ENST00000482217 URB1O60287 2271 aaKnown RBP1.98□□□□□ -2.09
VPS41-212ENST00000482217 ASCC3Q8N3C0 2202 aaKnown RBP1.98□□□□□ -2.09
VPS41-212ENST00000482217 GVQW2A0A096LPI5 108 aaPredicted RBP1.98□□□□□ -2.09
VPS41-212ENST00000482217 HAMPP81172 84 aa1.98□□□□□ -2.09
VPS41-212ENST00000482217 IGFL1Q6UW32 110 aa1.98□□□□□ -2.09
VPS41-212ENST00000482217 Q6ZRX8 168 aa1.98□□□□□ -2.09
VPS41-212ENST00000482217 SSBP3-AS1Q7Z2R9 100 aa1.98□□□□□ -2.09
VPS41-212ENST00000482217 BPTFQ12830 3046 aa1.98□□□□□ -2.09
VPS41-212ENST00000482217 TNRC6CQ9HCJ0 1690 aaKnown RBP1.97□□□□□ -2.09
VPS41-212ENST00000482217 COX6B1P14854 86 aa1.97□□□□□ -2.09
VPS41-212ENST00000482217 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.97□□□□□ -2.09
VPS41-212ENST00000482217 SPINK4O60575 86 aa1.96□□□□□ -2.1
VPS41-212ENST00000482217 LY6G6CO95867 125 aa1.96□□□□□ -2.1
VPS41-212ENST00000482217 PLNP26678 52 aa1.96□□□□□ -2.1
VPS41-212ENST00000482217 PLAC4Q8WY50 150 aa1.96□□□□□ -2.1
VPS41-212ENST00000482217 TIMM8BQ9Y5J9 83 aaPredicted RBP1.96□□□□□ -2.1
VPS41-212ENST00000482217 PRB1P04280 392 aa1.95□□□□□ -2.1
VPS41-212ENST00000482217 LCE1CQ5T751 118 aa1.95□□□□□ -2.1
VPS41-212ENST00000482217 LCE1BQ5T7P3 118 aa1.95□□□□□ -2.1
VPS41-212ENST00000482217 A0A0G2JMZ2 1700 aa1.94□□□□□ -2.1
VPS41-212ENST00000482217 LRRC37AA6NMS7 1700 aa1.94□□□□□ -2.1
VPS41-212ENST00000482217 GOLGA4Q13439 2230 aaKnown RBP1.94□□□□□ -2.1
VPS41-212ENST00000482217 SMIM11BQ8TCY0 68 aa1.94□□□□□ -2.1
VPS41-212ENST00000482217 LCE3DQ9BYE3 92 aa1.94□□□□□ -2.1
VPS41-212ENST00000482217 CACNA1GO43497 2377 aa1.94□□□□□ -2.1
VPS41-212ENST00000482217 KNTC1P50748 2209 aa1.94□□□□□ -2.1
VPS41-212ENST00000482217 DUOX1Q9NRD9 1551 aa1.93□□□□□ -2.1
VPS41-212ENST00000482217 NCR3O14931 201 aa1.93□□□□□ -2.1
VPS41-212ENST00000482217 KRTAP10-1P60331 282 aa1.93□□□□□ -2.1
VPS41-212ENST00000482217 KCNQ1DNQ9H478 68 aa1.93□□□□□ -2.1
VPS41-212ENST00000482217 ZDBF2Q9HCK1 2354 aa1.93□□□□□ -2.1
VPS41-212ENST00000482217 KRTAP5-8O75690 187 aa1.92□□□□□ -2.1
VPS41-212ENST00000482217 KRTAP13-4Q3LI77 160 aa1.92□□□□□ -2.1
VPS41-212ENST00000482217 C10orf99Q6UWK7 81 aa1.92□□□□□ -2.1
VPS41-212ENST00000482217 PP632Q6XCG6 107 aa1.92□□□□□ -2.1
VPS41-212ENST00000482217 GOLGB1Q14789 3259 aaKnown RBP1.92□□□□□ -2.1
VPS41-212ENST00000482217 ALMS1Q8TCU4 4167 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 ETDCA0A1B0GVM5 59 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 LINC01546A6NGU7 62 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 CPSF4LA6NMK7 179 aaKnown RBP1.91□□□□□ -2.1
VPS41-212ENST00000482217 SERF2P84101 59 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 CRIPTQ9P021 101 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 UTRNP46939 3433 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 AHCTF1Q8WYP5 2266 aa1.91□□□□□ -2.1
VPS41-212ENST00000482217 DEFB114Q30KQ6 69 aa1.9□□□□□ -2.11
VPS41-212ENST00000482217 KRTAP10-10P60014 251 aa1.89□□□□□ -2.11
VPS41-212ENST00000482217 SNRPGP62308 76 aaKnown RBP1.89□□□□□ -2.11
VPS41-212ENST00000482217 NDUFA3O95167 84 aa1.88□□□□□ -2.11
VPS41-212ENST00000482217 CRIP1P50238 77 aa1.88□□□□□ -2.11
VPS41-212ENST00000482217 BAHCC1Q9P281 2608 aa1.87□□□□□ -2.11
VPS41-212ENST00000482217 SRCAPQ6ZRS2 3230 aa1.87□□□□□ -2.11
VPS41-212ENST00000482217 CACNA1BQ00975 2339 aa1.87□□□□□ -2.11
VPS41-212ENST00000482217 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.87□□□□□ -2.111e-7■■■■■ 39.2
VPS41-212ENST00000482217 CNOT1A5YKK6 2376 aaKnown RBP1.86□□□□□ -2.11
VPS41-212ENST00000482217 UNQ6190/PRO20217Q6UXQ8 127 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms