RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 SERF1AO75920 110 aa10.5□□□□□ -0.73
COL9A3-212ENST00000481800 CRYGAP11844 174 aa10.49□□□□□ -0.73
COL9A3-212ENST00000481800 MEIG1Q5JSS6 88 aa10.49□□□□□ -0.73
COL9A3-212ENST00000481800 HERV-K104P63124 156 aa10.48□□□□□ -0.73
COL9A3-212ENST00000481800 FAM19A1Q7Z5A9 133 aa10.48□□□□□ -0.73
COL9A3-212ENST00000481800 KRTAP13-1Q8IUC0 172 aa10.48□□□□□ -0.73
COL9A3-212ENST00000481800 TMEM126AQ9H061 195 aa10.48□□□□□ -0.73
COL9A3-212ENST00000481800 LINC00587B1AMM8 73 aa10.47□□□□□ -0.73
COL9A3-212ENST00000481800 TMEM238C9JI98 176 aa10.47□□□□□ -0.73
COL9A3-212ENST00000481800 HSPB8Q9UJY1 196 aa10.47□□□□□ -0.73
COL9A3-212ENST00000481800 LRP2P98164 4655 aa10.47□□□□□ -0.73
COL9A3-212ENST00000481800 SMIM13P0DJ93 91 aa10.46□□□□□ -0.73
COL9A3-212ENST00000481800 Q8NDZ9 215 aa10.46□□□□□ -0.73
COL9A3-212ENST00000481800 NDUFA12Q9UI09 145 aa10.46□□□□□ -0.73
COL9A3-212ENST00000481800 MYMXA0A1B0GTQ4 84 aa10.45□□□□□ -0.74
COL9A3-212ENST00000481800 COLCA2A8K830 154 aa10.45□□□□□ -0.74
COL9A3-212ENST00000481800 FABP4P15090 132 aa10.45□□□□□ -0.74
COL9A3-212ENST00000481800 LINC00310P59036 64 aa10.45□□□□□ -0.74
COL9A3-212ENST00000481800 PRLHP81277 87 aa10.45□□□□□ -0.74
COL9A3-212ENST00000481800 TYMSOSQ8TAI1 123 aa10.45□□□□□ -0.74
COL9A3-212ENST00000481800 A0A087X002 238 aa10.44□□□□□ -0.74
COL9A3-212ENST00000481800 M0R378 163 aa10.44□□□□□ -0.74
COL9A3-212ENST00000481800 PLNP26678 52 aa10.44□□□□□ -0.74
COL9A3-212ENST00000481800 ANAPC11Q9NYG5 84 aa10.44□□□□□ -0.74
COL9A3-212ENST00000481800 BOD1L2Q8IYS8 172 aa10.43□□□□□ -0.74
COL9A3-212ENST00000481800 MIR7-3HGQ8N6C7 128 aa10.43□□□□□ -0.74
COL9A3-212ENST00000481800 MAP1LC3CQ9BXW4 147 aa10.43□□□□□ -0.74
COL9A3-212ENST00000481800 PLEKHB2Q96CS7 222 aa10.42□□□□□ -0.74
COL9A3-212ENST00000481800 LEPROTO15243 131 aa10.41□□□□□ -0.74
COL9A3-212ENST00000481800 DPM2O94777 84 aa10.41□□□□□ -0.74
COL9A3-212ENST00000481800 TSPAN13O95857 204 aa10.41□□□□□ -0.74
COL9A3-212ENST00000481800 HERVK_113P61574 105 aa10.41□□□□□ -0.74
COL9A3-212ENST00000481800 PRR4Q16378 134 aa10.41□□□□□ -0.74
COL9A3-212ENST00000481800 FAM229BQ4G0N7 80 aa10.4□□□□□ -0.74
COL9A3-212ENST00000481800 PMCHL2Q9BQD1 86 aa10.39□□□□□ -0.75
COL9A3-212ENST00000481800 IGKV2D-26A0A0A0MRZ7 120 aa10.38□□□□□ -0.75
COL9A3-212ENST00000481800 NCR3O14931 201 aa10.38□□□□□ -0.75
COL9A3-212ENST00000481800 IGKCP01834 107 aa10.38□□□□□ -0.75
COL9A3-212ENST00000481800 HIGD2AQ9BW72 106 aa10.38□□□□□ -0.75
COL9A3-212ENST00000481800 J3QQQ9 107 aa10.37□□□□□ -0.75
COL9A3-212ENST00000481800 LGALS3P17931 250 aaKnown RBP10.37□□□□□ -0.75
COL9A3-212ENST00000481800 TSPEAR-AS2P59090 65 aa10.37□□□□□ -0.75
COL9A3-212ENST00000481800 PRYO14603 147 aa10.36□□□□□ -0.75
COL9A3-212ENST00000481800 KRTAP13-2Q52LG2 175 aa10.36□□□□□ -0.75
COL9A3-212ENST00000481800 NMUP48645 174 aa10.35□□□□□ -0.75
COL9A3-212ENST00000481800 S100A12P80511 92 aa10.35□□□□□ -0.75
COL9A3-212ENST00000481800 DAND5Q8N907 189 aa10.34□□□□□ -0.75
COL9A3-212ENST00000481800 MIEN1Q9BRT3 115 aa10.33□□□□□ -0.76
COL9A3-212ENST00000481800 KCNQ1DNQ9H478 68 aa10.33□□□□□ -0.76
COL9A3-212ENST00000481800 ETDCA0A1B0GVM5 59 aa10.32□□□□□ -0.76
COL9A3-212ENST00000481800 LINC00304Q8N9R0 145 aa10.32□□□□□ -0.76
COL9A3-212ENST00000481800 TRBV10-3A0A0K0K1G6 114 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BKO60814 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BJP06899 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BOP23527 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BBP33778 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BDP58876 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BCP62807 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST2H2BEQ16778 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.31□□□□□ -0.76
COL9A3-212ENST00000481800 LINC00337Q8N6G1 96 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BHQ93079 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BNQ99877 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 HIST1H2BMQ99879 126 aa10.31□□□□□ -0.76
COL9A3-212ENST00000481800 ZNF706Q9Y5V0 76 aaPredicted RBP10.31□□□□□ -0.76
COL9A3-212ENST00000481800 LOC107984156A0A0G2JMH3 177 aa10.3□□□□□ -0.76
COL9A3-212ENST00000481800 ARL17AQ8IVW1 177 aa10.3□□□□□ -0.76
COL9A3-212ENST00000481800 RNF213Q63HN8 5207 aa10.3□□□□□ -0.76
COL9A3-212ENST00000481800 SPRR1AP35321 89 aa10.29□□□□□ -0.76
COL9A3-212ENST00000481800 SPRR4Q96PI1 79 aa10.29□□□□□ -0.76
COL9A3-212ENST00000481800 TRBV10-2A0A0K0K1G8 114 aa10.28□□□□□ -0.76
COL9A3-212ENST00000481800 E9PLD3 99 aa10.28□□□□□ -0.76
COL9A3-212ENST00000481800 SYS1-DBNDD2H3BUS1 97 aa10.28□□□□□ -0.76
COL9A3-212ENST00000481800 DDTP30046 118 aa10.28□□□□□ -0.76
COL9A3-212ENST00000481800 LPAP08519 4548 aa10.28□□□□□ -0.76
COL9A3-212ENST00000481800 SMCR5Q8TEV8 140 aa10.27□□□□□ -0.77
COL9A3-212ENST00000481800 SPANXB1Q9NS25 103 aaPredicted RBP10.27□□□□□ -0.77
COL9A3-212ENST00000481800 C3orf22Q8N5N4 141 aa10.26□□□□□ -0.77
COL9A3-212ENST00000481800 A0A0J9YXY3 114 aa10.25□□□□□ -0.77
COL9A3-212ENST00000481800 S100A7L2Q5SY68 101 aa10.25□□□□□ -0.77
COL9A3-212ENST00000481800 KRTAP4-16G5E9R7 235 aaPredicted RBP10.24□□□□□ -0.77
COL9A3-212ENST00000481800 NDUFC2O95298 119 aa10.24□□□□□ -0.77
COL9A3-212ENST00000481800 PET117Q6UWS5 81 aa10.24□□□□□ -0.77
COL9A3-212ENST00000481800 NPC2P61916 151 aa10.23□□□□□ -0.77
COL9A3-212ENST00000481800 CTAG1AP78358 180 aa10.23□□□□□ -0.77
COL9A3-212ENST00000481800 B5MCH6 92 aa10.22□□□□□ -0.77
COL9A3-212ENST00000481800 LINC01545Q5VT33 79 aa10.22□□□□□ -0.77
COL9A3-212ENST00000481800 RETNLBQ9BQ08 111 aa10.22□□□□□ -0.77
COL9A3-212ENST00000481800 PPDPFQ9H3Y8 114 aa10.22□□□□□ -0.77
COL9A3-212ENST00000481800 C4orf48Q5BLP8 95 aa10.21□□□□□ -0.77
COL9A3-212ENST00000481800 ADAMTSL4-AS1Q5T5F5 129 aa10.21□□□□□ -0.77
COL9A3-212ENST00000481800 SPAG11AQ6PDA7 123 aa10.21□□□□□ -0.77
COL9A3-212ENST00000481800 IGLV6-57P01721 117 aa10.19□□□□□ -0.78
COL9A3-212ENST00000481800 SOSTDC1Q6X4U4 206 aa10.19□□□□□ -0.78
COL9A3-212ENST00000481800 TRAV23DV6A0A075B6W5 121 aa10.18□□□□□ -0.78
COL9A3-212ENST00000481800 C3orf79P0CE67 100 aa10.18□□□□□ -0.78
COL9A3-212ENST00000481800 GAGE2AQ6NT46 116 aa10.18□□□□□ -0.78
COL9A3-212ENST00000481800 ZNF815PA8K554 130 aa10.17□□□□□ -0.78
COL9A3-212ENST00000481800 EIF4EBP3O60516 100 aaPredicted RBP10.17□□□□□ -0.78
COL9A3-212ENST00000481800 KRTDAPP60985 99 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms