RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SND1-IT1Q9HBX3 110 aa6.57□□□□□ -1.36
USP39-215ENST00000481409 PLA2G2DQ9UNK4 145 aa6.57□□□□□ -1.36
USP39-215ENST00000481409 IGLV5-52A0A0A0MRZ9 124 aa6.56□□□□□ -1.36
USP39-215ENST00000481409 A0A0U1RRA0 63 aa6.56□□□□□ -1.36
USP39-215ENST00000481409 A6NDN8 102 aa6.56□□□□□ -1.36
USP39-215ENST00000481409 PCP4L1A6NKN8 68 aa6.56□□□□□ -1.36
USP39-215ENST00000481409 RPL18AQ02543 176 aaKnown RBP6.56□□□□□ -1.36
USP39-215ENST00000481409 BVES-AS1Q5T3Y7 98 aa6.56□□□□□ -1.36
USP39-215ENST00000481409 KRTAP9-2Q9BYQ4 174 aa6.56□□□□□ -1.36
USP39-215ENST00000481409 SDIM1Q6ZPB5 146 aa6.55□□□□□ -1.36
USP39-215ENST00000481409 DAND5Q8N907 189 aa6.55□□□□□ -1.36
USP39-215ENST00000481409 CBY1Q9Y3M2 126 aa6.55□□□□□ -1.36
USP39-215ENST00000481409 A0A0B4J2C4 111 aa6.54□□□□□ -1.36
USP39-215ENST00000481409 TRBV10-2A0A0K0K1G8 114 aa6.54□□□□□ -1.36
USP39-215ENST00000481409 A0A1B0GWB2 263 aa6.54□□□□□ -1.36
USP39-215ENST00000481409 EIF4EBP3O60516 100 aaPredicted RBP6.54□□□□□ -1.36
USP39-215ENST00000481409 TRAV13-2A0A0B4J235 113 aa6.53□□□□□ -1.36
USP39-215ENST00000481409 KRTAP9-6A0A140TA67 174 aa6.53□□□□□ -1.36
USP39-215ENST00000481409 A4D1N5 150 aa6.53□□□□□ -1.36
USP39-215ENST00000481409 HINT1P49773 126 aaPredicted RBP6.53□□□□□ -1.36
USP39-215ENST00000481409 GAGE2EQ4V326 116 aa6.53□□□□□ -1.36
USP39-215ENST00000481409 LBHQ53QV2 105 aaPredicted RBP6.53□□□□□ -1.36
USP39-215ENST00000481409 SOSTDC1Q6X4U4 206 aa6.53□□□□□ -1.36
USP39-215ENST00000481409 GAGE2DQ9UEU5 116 aa6.53□□□□□ -1.36
USP39-215ENST00000481409 IGLV5-37A0A075B6J1 123 aa6.52□□□□□ -1.37
USP39-215ENST00000481409 FXYD2P54710 66 aa6.52□□□□□ -1.37
USP39-215ENST00000481409 GAGE2BQ13066 116 aa6.52□□□□□ -1.37
USP39-215ENST00000481409 SACSQ9NZJ4 4579 aa6.51□□□□□ -1.37
USP39-215ENST00000481409 NPC2P61916 151 aa6.51□□□□□ -1.37
USP39-215ENST00000481409 C9orf129Q5T035 196 aaKnown RBP6.51□□□□□ -1.37
USP39-215ENST00000481409 RAB37Q96AX2 223 aa6.51□□□□□ -1.37
USP39-215ENST00000481409 XAGE1AQ9HD64 81 aa6.51□□□□□ -1.37
USP39-215ENST00000481409 A0A096LNI7 61 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 M0R378 163 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 CFC1BP0CG36 223 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 CFC1P0CG37 223 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 VPREB1P12018 145 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 COL5A1-AS1Q5SY13 56 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 SNHG12Q9BXW3 62 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 TMEM126AQ9H061 195 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 NHP2Q9NX24 153 aaKnown RBP6.5□□□□□ -1.37
USP39-215ENST00000481409 PRO1854Q9UHT4 67 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 DNAH10Q8IVF4 4471 aa6.5□□□□□ -1.37
USP39-215ENST00000481409 EPM2AB3EWF7 344 aa6.49□□□□□ -1.37
USP39-215ENST00000481409 NKAPP1Q8N9T2 125 aa6.49□□□□□ -1.37
USP39-215ENST00000481409 SPACA4Q8TDM5 124 aa6.49□□□□□ -1.37
USP39-215ENST00000481409 DNAH17Q9UFH2 4485 aa6.48□□□□□ -1.37
USP39-215ENST00000481409 DNAH2Q9P225 4427 aa6.48□□□□□ -1.37
USP39-215ENST00000481409 HYDINQ4G0P3 5121 aa6.48□□□□□ -1.37
USP39-215ENST00000481409 KRTAP10-2P60368 255 aa6.48□□□□□ -1.37
USP39-215ENST00000481409 BATFQ16520 125 aa6.48□□□□□ -1.37
USP39-215ENST00000481409 IGKV2-28A0A075B6P5 120 aa6.47□□□□□ -1.37
USP39-215ENST00000481409 IGKV2-24A0A0C4DH68 120 aa6.47□□□□□ -1.37
USP39-215ENST00000481409 A0A1B0GVY2 172 aa6.47□□□□□ -1.37
USP39-215ENST00000481409 IGKV2D-28P01615 120 aa6.47□□□□□ -1.37
USP39-215ENST00000481409 S100A7L2Q5SY68 101 aa6.47□□□□□ -1.37
USP39-215ENST00000481409 IGLV6-57P01721 117 aa6.46□□□□□ -1.38
USP39-215ENST00000481409 Q6ZSA8 131 aa6.46□□□□□ -1.38
USP39-215ENST00000481409 FRAS1Q86XX4 4008 aa6.45□□□□□ -1.38
USP39-215ENST00000481409 MRPL55Q7Z7F7 128 aaKnown RBP6.45□□□□□ -1.38
USP39-215ENST00000481409 LINC00337Q8N6G1 96 aa6.45□□□□□ -1.38
USP39-215ENST00000481409 OR13C6PQ8NH95 151 aa6.45□□□□□ -1.38
USP39-215ENST00000481409 DPH3Q96FX2 82 aa6.45□□□□□ -1.38
USP39-215ENST00000481409 PLAC8Q9NZF1 115 aa6.45□□□□□ -1.38
USP39-215ENST00000481409 C22orf24Q9Y442 160 aa6.45□□□□□ -1.38
USP39-215ENST00000481409 M0QXV9 152 aa6.44□□□□□ -1.38
USP39-215ENST00000481409 NCR3O14931 201 aa6.44□□□□□ -1.38
USP39-215ENST00000481409 RPL13AP40429 203 aaKnown RBP6.44□□□□□ -1.38
USP39-215ENST00000481409 RPL28P46779 137 aaKnown RBP6.44□□□□□ -1.38
USP39-215ENST00000481409 SERTAD4-AS1Q5TG53 156 aa6.44□□□□□ -1.38
USP39-215ENST00000481409 LYRM7Q5U5X0 104 aa6.44□□□□□ -1.38
USP39-215ENST00000481409 COX6CP09669 75 aa6.43□□□□□ -1.38
USP39-215ENST00000481409 CHTF8P0CG12 524 aa6.43□□□□□ -1.38
USP39-215ENST00000481409 LINC01620Q4KN68 170 aa6.43□□□□□ -1.38
USP39-215ENST00000481409 FAM19A5Q7Z5A7 132 aaPredicted RBP6.43□□□□□ -1.38
USP39-215ENST00000481409 Q8NDZ9 215 aa6.43□□□□□ -1.38
USP39-215ENST00000481409 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.43□□□□□ -1.38
USP39-215ENST00000481409 KMT2CQ8NEZ4 4911 aaKnown RBP6.43□□□□□ -1.38
USP39-215ENST00000481409 RYR2Q92736 4967 aa6.43□□□□□ -1.38
USP39-215ENST00000481409 IGLV1-50A0A075B6I6 118 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 A0A087WYN8 130 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 TRBV7-6A0A0J9YX20 115 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 A0A1W2PNN7 141 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 FAM168BA1KXE4 195 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 C9orf118A6NHY6 69 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 K7ERJ3 54 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 PRYO14603 147 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 PRR3P79522 188 aaKnown RBP6.42□□□□□ -1.38
USP39-215ENST00000481409 Q1RN00 199 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 KRTAP7-1Q8IUC3 87 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 C7orf33Q8WU49 177 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 KCNQ1DNQ9H478 68 aa6.42□□□□□ -1.38
USP39-215ENST00000481409 TRAV23DV6A0A075B6W5 121 aa6.41□□□□□ -1.38
USP39-215ENST00000481409 TRBV10-3A0A0K0K1G6 114 aa6.41□□□□□ -1.38
USP39-215ENST00000481409 TAX1BP3O14907 124 aa6.41□□□□□ -1.38
USP39-215ENST00000481409 TSPAN13O95857 204 aa6.41□□□□□ -1.38
USP39-215ENST00000481409 VAMP3Q15836 100 aa6.41□□□□□ -1.38
USP39-215ENST00000481409 LINC00167Q96N53 147 aa6.41□□□□□ -1.38
USP39-215ENST00000481409 H0YGX0 51 aa6.4□□□□□ -1.38
USP39-215ENST00000481409 KRTAP10-1P60331 282 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms