RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 CHCHD5Q9BSY4 110 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 LAMTOR3Q9UHA4 124 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 STARD9Q9P2P6 4700 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 TRAV26-2A0A0B4J265 109 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 LOC107984640A0A0U1RRK4 108 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 LCE6AA0A183 80 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 ZNF815PA8K554 130 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 ATP5EP56381 51 aaPredicted RBP4.24□□□□□ -1.73
SF3B1-209ENST00000479532 ESRGQ1W209 222 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 LELP1Q5T871 98 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 KRTAP5-1Q6L8H4 278 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 SCGB1D4Q6XE38 83 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 TOMM6Q96B49 74 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 UPK3BQ9BT76 320 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 LINC00588Q9Y4M8 146 aa4.24□□□□□ -1.73
SF3B1-209ENST00000479532 TRAV13-1A0A0B4J241 112 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 TRBV6-5A0A0K0K1A5 114 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 C11orf86A6NJI1 115 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 INAFM2P0DMQ5 153 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 RPL18AQ02543 176 aaKnown RBP4.23□□□□□ -1.73
SF3B1-209ENST00000479532 C2orf82Q6UX34 121 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 Q8N9P0 234 aaPredicted RBP4.23□□□□□ -1.73
SF3B1-209ENST00000479532 RNF185Q96GF1 192 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 SERP1Q9Y6X1 66 aa4.23□□□□□ -1.73
SF3B1-209ENST00000479532 CSMD3Q7Z407 3707 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 TRBV6-8A0A0A6YYG3 113 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 IGHV3-38A0A0C4DH36 116 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 SMKR1H3BMG3 65 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 I3L3M4 83 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 LST1O00453 97 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 UBE2L6O14933 153 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 IGKV2-30P06310 120 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 ATP5EP2Q5VTU8 51 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 RPL39LQ96EH5 51 aaKnown RBP4.22□□□□□ -1.73
SF3B1-209ENST00000479532 TTTY13Q9BZ97 58 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 Q9H8V8 135 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 PYGO1Q9Y3Y4 419 aa4.22□□□□□ -1.73
SF3B1-209ENST00000479532 A0A0J9YXY3 114 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 TEX49A0A1B0GTD5 131 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 LOC389332A0A1B0GUA5 103 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 J3QQQ9 107 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 NPC2P61916 151 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 TMEM141Q96I45 108 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 TMEM243Q9BU79 118 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 CHCHD7Q9BUK0 85 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 Q9UF83 564 aa4.21□□□□□ -1.74
SF3B1-209ENST00000479532 DYNC2H1Q8NCM8 4307 aaKnown RBP4.21□□□□□ -1.74
SF3B1-209ENST00000479532 SMIM26A0A096LP01 95 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 TRBV27A0A0K0K1C4 114 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 TMEM223A0PJW6 202 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 H7C423 109 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 PFN2P35080 140 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 LINC01556Q5JQF7 62 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 Q6JHZ5 121 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 WFDC10BQ8IUB3 73 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 TIMM17AQ99595 171 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 SMIM2Q9BVW6 85 aa4.2□□□□□ -1.74
SF3B1-209ENST00000479532 PLECQ15149 4684 aaKnown RBP4.19□□□□□ -1.74
SF3B1-209ENST00000479532 NBDYA0A0U1RRE5 68 aa4.19□□□□□ -1.74
SF3B1-209ENST00000479532 TIMM17BO60830 172 aa4.19□□□□□ -1.74
SF3B1-209ENST00000479532 DNAH10OSP0CZ25 163 aa4.19□□□□□ -1.74
SF3B1-209ENST00000479532 POLR2KP53803 58 aaKnown RBP4.19□□□□□ -1.74
SF3B1-209ENST00000479532 S100A7L2Q5SY68 101 aa4.19□□□□□ -1.74
SF3B1-209ENST00000479532 ALMS1Q8TCU4 4167 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 TRBV10-3A0A0K0K1G6 114 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 M0R2N4 97 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 LEPROTO15243 131 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 NDUFC1O43677 76 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 GAS8-AS1O95177 125 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 CRPP02741 224 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 IGHV3-30-3P0DP02 117 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 HRCT1Q6UXD1 115 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 NTM-AS1Q6ZSK4 140 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 SCGB3A1Q96QR1 104 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 AMELXQ99217 191 aa4.18□□□□□ -1.74
SF3B1-209ENST00000479532 TRAV8-3A0A0A6YYJ7 113 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 TSHBP01222 138 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 ANGP03950 147 aaKnown RBP4.17□□□□□ -1.74
SF3B1-209ENST00000479532 ZNF22P17026 224 aaPredicted RBP4.17□□□□□ -1.74
SF3B1-209ENST00000479532 C4orf26Q17RF5 130 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 C1orf134Q5TEV5 83 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 C1orf195Q5TG92 126 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 C6orf223Q8N319 242 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 DEFB104AQ8WTQ1 72 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 RMI2Q96E14 147 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 TIMM21Q9BVV7 248 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 TENM2Q9NT68 2774 aa4.17□□□□□ -1.74
SF3B1-209ENST00000479532 LYSTQ99698 3801 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-209ENST00000479532 FAM236DA0A1B0GTK5 79 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 A0A1B0GUV1 79 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 hADV29S1A0JD25 119 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 IGKV2-29A2NJV5 120 aaPredicted RBP4.16□□□□□ -1.74
SF3B1-209ENST00000479532 IBA57-AS1B1ANH7 110 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 PSCAO43653 123 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 FAM236CP0DP71 79 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 LGALS3P17931 250 aaKnown RBP4.16□□□□□ -1.74
SF3B1-209ENST00000479532 Q6ZR54 194 aa4.16□□□□□ -1.74
SF3B1-209ENST00000479532 KLK12Q9UKR0 248 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms