RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 A0A087X002 238 aa7.12□□□□□ -1.27
SYNE1-223ENST00000476519 TRGC2P03986 189 aa7.12□□□□□ -1.27
SYNE1-223ENST00000476519 HERV-K104P63124 156 aa7.12□□□□□ -1.27
SYNE1-223ENST00000476519 FAM229BQ4G0N7 80 aa7.12□□□□□ -1.27
SYNE1-223ENST00000476519 TYMSOSQ8TAI1 123 aa7.12□□□□□ -1.27
SYNE1-223ENST00000476519 TMEM126AQ9H061 195 aa7.12□□□□□ -1.27
SYNE1-223ENST00000476519 M0R378 163 aa7.11□□□□□ -1.27
SYNE1-223ENST00000476519 ATP6V1G1O75348 118 aa7.11□□□□□ -1.27
SYNE1-223ENST00000476519 TMEM238C9JI98 176 aa7.1□□□□□ -1.27
SYNE1-223ENST00000476519 LEPROTL1O95214 131 aa7.1□□□□□ -1.27
SYNE1-223ENST00000476519 FAM19A1Q7Z5A9 133 aa7.1□□□□□ -1.27
SYNE1-223ENST00000476519 Q8NDZ9 215 aa7.1□□□□□ -1.27
SYNE1-223ENST00000476519 A0A0U1RRA0 63 aa7.09□□□□□ -1.27
SYNE1-223ENST00000476519 MYMXA0A1B0GTQ4 84 aa7.09□□□□□ -1.27
SYNE1-223ENST00000476519 SMIM13P0DJ93 91 aa7.09□□□□□ -1.27
SYNE1-223ENST00000476519 PRR4Q16378 134 aa7.09□□□□□ -1.27
SYNE1-223ENST00000476519 ANAPC11Q9NYG5 84 aa7.09□□□□□ -1.27
SYNE1-223ENST00000476519 HSPB8Q9UJY1 196 aa7.09□□□□□ -1.27
SYNE1-223ENST00000476519 SERF1AO75920 110 aa7.08□□□□□ -1.28
SYNE1-223ENST00000476519 PRLHP81277 87 aa7.08□□□□□ -1.28
SYNE1-223ENST00000476519 MEIG1Q5JSS6 88 aa7.08□□□□□ -1.28
SYNE1-223ENST00000476519 MAP1LC3CQ9BXW4 147 aa7.08□□□□□ -1.28
SYNE1-223ENST00000476519 NDUFA12Q9UI09 145 aa7.08□□□□□ -1.28
SYNE1-223ENST00000476519 IGKV2D-26A0A0A0MRZ7 120 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 COLCA2A8K830 154 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 TSPAN13O95857 204 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 PLNP26678 52 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 CTAG1AP78358 180 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 BOD1L2Q8IYS8 172 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 SLC7A5P1Q8MH63 180 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 MIR7-3HGQ8N6C7 128 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 PLEKHB2Q96CS7 222 aa7.07□□□□□ -1.28
SYNE1-223ENST00000476519 H0Y8G0 127 aa7.06□□□□□ -1.28
SYNE1-223ENST00000476519 LEPROTO15243 131 aa7.06□□□□□ -1.28
SYNE1-223ENST00000476519 LINC00310P59036 64 aa7.06□□□□□ -1.28
SYNE1-223ENST00000476519 KRTAP13-2Q52LG2 175 aa7.06□□□□□ -1.28
SYNE1-223ENST00000476519 LOC107984156A0A0G2JMH3 177 aa7.05□□□□□ -1.28
SYNE1-223ENST00000476519 ARL17AQ8IVW1 177 aa7.05□□□□□ -1.28
SYNE1-223ENST00000476519 KCNQ1DNQ9H478 68 aa7.05□□□□□ -1.28
SYNE1-223ENST00000476519 PRYO14603 147 aa7.04□□□□□ -1.28
SYNE1-223ENST00000476519 DPM2O94777 84 aa7.04□□□□□ -1.28
SYNE1-223ENST00000476519 FABP4P15090 132 aa7.04□□□□□ -1.28
SYNE1-223ENST00000476519 HERVK_113P61574 105 aa7.04□□□□□ -1.28
SYNE1-223ENST00000476519 LINC00337Q8N6G1 96 aa7.04□□□□□ -1.28
SYNE1-223ENST00000476519 LINC00304Q8N9R0 145 aa7.04□□□□□ -1.28
SYNE1-223ENST00000476519 NMUP48645 174 aa7.03□□□□□ -1.28
SYNE1-223ENST00000476519 S100A12P80511 92 aa7.03□□□□□ -1.28
SYNE1-223ENST00000476519 HIGD2AQ9BW72 106 aa7.03□□□□□ -1.28
SYNE1-223ENST00000476519 J3QQQ9 107 aa7.02□□□□□ -1.29
SYNE1-223ENST00000476519 IGKCP01834 107 aa7.02□□□□□ -1.29
SYNE1-223ENST00000476519 SPRR1AP35321 89 aa7.02□□□□□ -1.29
SYNE1-223ENST00000476519 ZNF706Q9Y5V0 76 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-223ENST00000476519 MUC2Q02817 5179 aa7.02□□□□□ -1.29
SYNE1-223ENST00000476519 TSPEAR-AS2P59090 65 aa7.01□□□□□ -1.29
SYNE1-223ENST00000476519 SPRR4Q96PI1 79 aa7.01□□□□□ -1.29
SYNE1-223ENST00000476519 TRBV10-3A0A0K0K1G6 114 aa7□□□□□ -1.29
SYNE1-223ENST00000476519 TRBV10-2A0A0K0K1G8 114 aa7□□□□□ -1.29
SYNE1-223ENST00000476519 KRTAP4-16G5E9R7 235 aaPredicted RBP7□□□□□ -1.29
SYNE1-223ENST00000476519 NCR3O14931 201 aa7□□□□□ -1.29
SYNE1-223ENST00000476519 LGALS3P17931 250 aaKnown RBP7□□□□□ -1.29
SYNE1-223ENST00000476519 SPAG11AQ6PDA7 123 aa7□□□□□ -1.29
SYNE1-223ENST00000476519 ETDCA0A1B0GVM5 59 aa6.99□□□□□ -1.29
SYNE1-223ENST00000476519 PMCHL2Q9BQD1 86 aa6.99□□□□□ -1.29
SYNE1-223ENST00000476519 DAND5Q8N907 189 aa6.98□□□□□ -1.29
SYNE1-223ENST00000476519 SMCR5Q8TEV8 140 aa6.98□□□□□ -1.29
SYNE1-223ENST00000476519 MIEN1Q9BRT3 115 aa6.98□□□□□ -1.29
SYNE1-223ENST00000476519 E9PLD3 99 aa6.97□□□□□ -1.29
SYNE1-223ENST00000476519 NDUFC2O95298 119 aa6.97□□□□□ -1.29
SYNE1-223ENST00000476519 DDTP30046 118 aa6.97□□□□□ -1.29
SYNE1-223ENST00000476519 C3orf22Q8N5N4 141 aa6.97□□□□□ -1.29
SYNE1-223ENST00000476519 SPANXB1Q9NS25 103 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-223ENST00000476519 SYS1-DBNDD2H3BUS1 97 aa6.96□□□□□ -1.3
SYNE1-223ENST00000476519 B5MCH6 92 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BKO60814 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 IGLV6-57P01721 117 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BJP06899 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BOP23527 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BBP33778 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BDP58876 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BCP62807 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST2H2BEQ16778 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 C4orf48Q5BLP8 95 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BHQ93079 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BNQ99877 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 HIST1H2BMQ99879 126 aa6.95□□□□□ -1.3
SYNE1-223ENST00000476519 A0A0J9YXY3 114 aa6.94□□□□□ -1.3
SYNE1-223ENST00000476519 LINC00483Q53H64 154 aa6.94□□□□□ -1.3
SYNE1-223ENST00000476519 S100A7L2Q5SY68 101 aa6.94□□□□□ -1.3
SYNE1-223ENST00000476519 ADAMTSL4-AS1Q5T5F5 129 aa6.94□□□□□ -1.3
SYNE1-223ENST00000476519 IGLV7-46A0A075B6I9 117 aa6.93□□□□□ -1.3
SYNE1-223ENST00000476519 PET117Q6UWS5 81 aa6.93□□□□□ -1.3
SYNE1-223ENST00000476519 RETNLBQ9BQ08 111 aa6.93□□□□□ -1.3
SYNE1-223ENST00000476519 CBY1Q9Y3M2 126 aa6.93□□□□□ -1.3
SYNE1-223ENST00000476519 JOSD1Q15040 202 aaPredicted RBP6.92□□□□□ -1.3
SYNE1-223ENST00000476519 TPRXLQ17RH7 258 aa6.92□□□□□ -1.3
SYNE1-223ENST00000476519 LINC01545Q5VT33 79 aa6.92□□□□□ -1.3
SYNE1-223ENST00000476519 Q6ZRX8 168 aa6.92□□□□□ -1.3
SYNE1-223ENST00000476519 PPDPFQ9H3Y8 114 aa6.92□□□□□ -1.3
SYNE1-223ENST00000476519 TIMM17BO60830 172 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms