RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 IGLV1-50A0A075B6I6 118 aa12.65□□□□□ -0.38
LIME1-204ENST00000476183 RPL28P46779 137 aaKnown RBP12.65□□□□□ -0.38
LIME1-204ENST00000476183 HSPB8Q9UJY1 196 aa12.65□□□□□ -0.38
LIME1-204ENST00000476183 RPL24P83731 157 aaKnown RBP12.64□□□□□ -0.39
LIME1-204ENST00000476183 KRTAP13-1Q8IUC0 172 aa12.64□□□□□ -0.39
LIME1-204ENST00000476183 SMIM13P0DJ93 91 aa12.63□□□□□ -0.39
LIME1-204ENST00000476183 TSPEAR-AS2P59090 65 aa12.63□□□□□ -0.39
LIME1-204ENST00000476183 PMCHL2Q9BQD1 86 aa12.63□□□□□ -0.39
LIME1-204ENST00000476183 NDUFA12Q9UI09 145 aa12.62□□□□□ -0.39
LIME1-204ENST00000476183 PLNP26678 52 aa12.61□□□□□ -0.39
LIME1-204ENST00000476183 TMEM238C9JI98 176 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BKO60814 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BJP06899 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BOP23527 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BBP33778 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BDP58876 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BCP62807 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST2H2BEQ16778 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BHQ93079 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BNQ99877 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 HIST1H2BMQ99879 126 aa12.6□□□□□ -0.39
LIME1-204ENST00000476183 DPM2O94777 84 aa12.59□□□□□ -0.39
LIME1-204ENST00000476183 UBE2AP49459 152 aa12.59□□□□□ -0.39
LIME1-204ENST00000476183 HERV-K104P63124 156 aa12.59□□□□□ -0.39
LIME1-204ENST00000476183 MEIG1Q5JSS6 88 aa12.59□□□□□ -0.39
LIME1-204ENST00000476183 LEPROTO15243 131 aa12.58□□□□□ -0.4
LIME1-204ENST00000476183 MIR7-3HGQ8N6C7 128 aa12.58□□□□□ -0.4
LIME1-204ENST00000476183 TMEM126AQ9H061 195 aa12.58□□□□□ -0.4
LIME1-204ENST00000476183 MYMXA0A1B0GTQ4 84 aa12.57□□□□□ -0.4
LIME1-204ENST00000476183 M0R378 163 aa12.57□□□□□ -0.4
LIME1-204ENST00000476183 IGKCP01834 107 aa12.56□□□□□ -0.4
LIME1-204ENST00000476183 RPL13AP40429 203 aaKnown RBP12.56□□□□□ -0.4
LIME1-204ENST00000476183 PLEKHB2Q96CS7 222 aa12.56□□□□□ -0.4
LIME1-204ENST00000476183 A0A087X002 238 aa12.55□□□□□ -0.4
LIME1-204ENST00000476183 ATP6V1G1O75348 118 aa12.55□□□□□ -0.4
LIME1-204ENST00000476183 PRLHP81277 87 aa12.55□□□□□ -0.4
LIME1-204ENST00000476183 MAP1LC3CQ9BXW4 147 aa12.55□□□□□ -0.4
LIME1-204ENST00000476183 J3QQQ9 107 aa12.54□□□□□ -0.4
LIME1-204ENST00000476183 FAM19A1Q7Z5A9 133 aa12.54□□□□□ -0.4
LIME1-204ENST00000476183 BOD1L2Q8IYS8 172 aa12.54□□□□□ -0.4
LIME1-204ENST00000476183 ANAPC11Q9NYG5 84 aa12.54□□□□□ -0.4
LIME1-204ENST00000476183 HERVK_113P61574 105 aa12.53□□□□□ -0.4
LIME1-204ENST00000476183 LINC00587B1AMM8 73 aa12.52□□□□□ -0.41
LIME1-204ENST00000476183 DAND5Q8N907 189 aa12.51□□□□□ -0.41
LIME1-204ENST00000476183 LPAP08519 4548 aa12.5□□□□□ -0.41
LIME1-204ENST00000476183 SYS1-DBNDD2H3BUS1 97 aa12.5□□□□□ -0.41
LIME1-204ENST00000476183 NCR3O14931 201 aa12.5□□□□□ -0.41
LIME1-204ENST00000476183 CRYGAP11844 174 aa12.48□□□□□ -0.41
LIME1-204ENST00000476183 LGALS3P17931 250 aaKnown RBP12.48□□□□□ -0.41
LIME1-204ENST00000476183 NMUP48645 174 aa12.48□□□□□ -0.41
LIME1-204ENST00000476183 LOC107984156A0A0G2JMH3 177 aa12.46□□□□□ -0.41
LIME1-204ENST00000476183 KRTAP13-2Q52LG2 175 aa12.46□□□□□ -0.41
LIME1-204ENST00000476183 ARL17AQ8IVW1 177 aa12.46□□□□□ -0.41
LIME1-204ENST00000476183 IGKV2D-26A0A0A0MRZ7 120 aa12.45□□□□□ -0.42
LIME1-204ENST00000476183 E9PLD3 99 aa12.45□□□□□ -0.42
LIME1-204ENST00000476183 LINC01545Q5VT33 79 aa12.45□□□□□ -0.42
LIME1-204ENST00000476183 PRYO14603 147 aa12.44□□□□□ -0.42
LIME1-204ENST00000476183 COA6Q5JTJ3 125 aaKnown RBP12.44□□□□□ -0.42
LIME1-204ENST00000476183 TYMSOSQ8TAI1 123 aa12.44□□□□□ -0.42
LIME1-204ENST00000476183 KCNQ1DNQ9H478 68 aa12.44□□□□□ -0.42
LIME1-204ENST00000476183 TRBV10-3A0A0K0K1G6 114 aa12.43□□□□□ -0.42
LIME1-204ENST00000476183 FAM229BQ4G0N7 80 aa12.43□□□□□ -0.42
LIME1-204ENST00000476183 A0A0J9YXY3 114 aa12.42□□□□□ -0.42
LIME1-204ENST00000476183 SPRR1AP35321 89 aa12.42□□□□□ -0.42
LIME1-204ENST00000476183 PET117Q6UWS5 81 aa12.42□□□□□ -0.42
LIME1-204ENST00000476183 HIGD2AQ9BW72 106 aa12.42□□□□□ -0.42
LIME1-204ENST00000476183 KRTAP4-16G5E9R7 235 aaPredicted RBP12.4□□□□□ -0.42
LIME1-204ENST00000476183 C3orf79P0CE67 100 aa12.4□□□□□ -0.42
LIME1-204ENST00000476183 ADAMTSL4-AS1Q5T5F5 129 aa12.4□□□□□ -0.42
LIME1-204ENST00000476183 RNF213Q63HN8 5207 aa12.4□□□□□ -0.42
LIME1-204ENST00000476183 EIF4EBP3O60516 100 aaPredicted RBP12.39□□□□□ -0.43
LIME1-204ENST00000476183 TSPAN13O95857 204 aa12.39□□□□□ -0.43
LIME1-204ENST00000476183 SOSTDC1Q6X4U4 206 aa12.39□□□□□ -0.43
LIME1-204ENST00000476183 LINC00337Q8N6G1 96 aa12.39□□□□□ -0.43
LIME1-204ENST00000476183 TRBV10-2A0A0K0K1G8 114 aa12.37□□□□□ -0.43
LIME1-204ENST00000476183 NPC2P61916 151 aa12.36□□□□□ -0.43
LIME1-204ENST00000476183 MIEN1Q9BRT3 115 aa12.36□□□□□ -0.43
LIME1-204ENST00000476183 SPANXB1Q9NS25 103 aaPredicted RBP12.36□□□□□ -0.43
LIME1-204ENST00000476183 DDTP30046 118 aa12.35□□□□□ -0.43
LIME1-204ENST00000476183 SPRR4Q96PI1 79 aa12.35□□□□□ -0.43
LIME1-204ENST00000476183 ETDCA0A1B0GVM5 59 aa12.34□□□□□ -0.43
LIME1-204ENST00000476183 NDUFC2O95298 119 aa12.34□□□□□ -0.43
LIME1-204ENST00000476183 KRTDAPP60985 99 aa12.34□□□□□ -0.43
LIME1-204ENST00000476183 LITAFQ99732 161 aa12.34□□□□□ -0.43
LIME1-204ENST00000476183 PRR4Q16378 134 aa12.33□□□□□ -0.44
LIME1-204ENST00000476183 C3orf22Q8N5N4 141 aa12.33□□□□□ -0.44
LIME1-204ENST00000476183 SMCR5Q8TEV8 140 aa12.33□□□□□ -0.44
LIME1-204ENST00000476183 TTTY13Q9BZ97 58 aa12.33□□□□□ -0.44
LIME1-204ENST00000476183 B5MCH6 92 aa12.31□□□□□ -0.44
LIME1-204ENST00000476183 IGLV6-57P01721 117 aa12.31□□□□□ -0.44
LIME1-204ENST00000476183 LINC00304Q8N9R0 145 aa12.3□□□□□ -0.44
LIME1-204ENST00000476183 ZNF815PA8K554 130 aa12.29□□□□□ -0.44
LIME1-204ENST00000476183 S100A12P80511 92 aa12.29□□□□□ -0.44
LIME1-204ENST00000476183 TIMM17BO60830 172 aa12.28□□□□□ -0.44
LIME1-204ENST00000476183 S100A7L2Q5SY68 101 aa12.28□□□□□ -0.44
LIME1-204ENST00000476183 LINC00308Q8TCZ7 52 aa12.28□□□□□ -0.44
LIME1-204ENST00000476183 ZNF706Q9Y5V0 76 aaPredicted RBP12.28□□□□□ -0.44
LIME1-204ENST00000476183 ERC2-IT1O76042 136 aa12.26□□□□□ -0.45
LIME1-204ENST00000476183 Q9BRP9 147 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms