RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 RPL24P83731 157 aaKnown RBP8.69□□□□□ -1.02
VAMP4-203ENST00000474047 LINC00167Q96N53 147 aa8.69□□□□□ -1.02
VAMP4-203ENST00000474047 PMCHL2Q9BQD1 86 aa8.69□□□□□ -1.02
VAMP4-203ENST00000474047 IGKCP01834 107 aa8.68□□□□□ -1.02
VAMP4-203ENST00000474047 MYMXA0A1B0GTQ4 84 aa8.68□□□□□ -1.02
VAMP4-203ENST00000474047 MT1HL1P0DM35 61 aa8.68□□□□□ -1.02
VAMP4-203ENST00000474047 HERV-K104P63124 156 aa8.68□□□□□ -1.02
VAMP4-203ENST00000474047 PLEKHB2Q96CS7 222 aa8.68□□□□□ -1.02
VAMP4-203ENST00000474047 NDUFA12Q9UI09 145 aa8.68□□□□□ -1.02
VAMP4-203ENST00000474047 IGLV5-37A0A075B6J1 123 aa8.67□□□□□ -1.02
VAMP4-203ENST00000474047 LINC00587B1AMM8 73 aa8.67□□□□□ -1.02
VAMP4-203ENST00000474047 LEPROTO15243 131 aa8.66□□□□□ -1.02
VAMP4-203ENST00000474047 H0Y9J4 135 aa8.66□□□□□ -1.02
VAMP4-203ENST00000474047 SMIM13P0DJ93 91 aa8.66□□□□□ -1.02
VAMP4-203ENST00000474047 LGALS3P17931 250 aaKnown RBP8.65□□□□□ -1.03
VAMP4-203ENST00000474047 S100A1P23297 94 aa8.65□□□□□ -1.03
VAMP4-203ENST00000474047 LRP1Q07954 4544 aaKnown RBP8.65□□□□□ -1.03
VAMP4-203ENST00000474047 SYS1-DBNDD2H3BUS1 97 aa8.64□□□□□ -1.03
VAMP4-203ENST00000474047 IGKV2-28A0A075B6P5 120 aa8.63□□□□□ -1.03
VAMP4-203ENST00000474047 J3QQQ9 107 aa8.63□□□□□ -1.03
VAMP4-203ENST00000474047 ZNF861PO60384 105 aa8.63□□□□□ -1.03
VAMP4-203ENST00000474047 BCE1O60756 84 aa8.63□□□□□ -1.03
VAMP4-203ENST00000474047 IGKV2D-28P01615 120 aa8.63□□□□□ -1.03
VAMP4-203ENST00000474047 VPREB1P12018 145 aa8.63□□□□□ -1.03
VAMP4-203ENST00000474047 RPL28P46779 137 aaKnown RBP8.63□□□□□ -1.03
VAMP4-203ENST00000474047 UBE2AP49459 152 aa8.62□□□□□ -1.03
VAMP4-203ENST00000474047 MIR7-3HGQ8N6C7 128 aa8.62□□□□□ -1.03
VAMP4-203ENST00000474047 NMUP48645 174 aa8.61□□□□□ -1.03
VAMP4-203ENST00000474047 TSPEAR-AS2P59090 65 aa8.61□□□□□ -1.03
VAMP4-203ENST00000474047 BOD1L2Q8IYS8 172 aa8.61□□□□□ -1.03
VAMP4-203ENST00000474047 FAT3Q8TDW7 4589 aa8.61□□□□□ -1.03
VAMP4-203ENST00000474047 PET117Q6UWS5 81 aa8.6□□□□□ -1.03
VAMP4-203ENST00000474047 KRTAP10-8P60410 259 aa8.6□□□□□ -1.03
VAMP4-203ENST00000474047 COA6Q5JTJ3 125 aaKnown RBP8.6□□□□□ -1.03
VAMP4-203ENST00000474047 IGLV1-50A0A075B6I6 118 aa8.59□□□□□ -1.03
VAMP4-203ENST00000474047 KRTDAPP60985 99 aa8.59□□□□□ -1.03
VAMP4-203ENST00000474047 M0R378 163 aa8.58□□□□□ -1.04
VAMP4-203ENST00000474047 LINC01545Q5VT33 79 aa8.58□□□□□ -1.04
VAMP4-203ENST00000474047 E9PLD3 99 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 C3orf79P0CE67 100 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 PRR26Q8N8Z3 221 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 Q8NDZ9 215 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 MIEN1Q9BRT3 115 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 FAM19A1Q7Z5A9 133 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 DAND5Q8N907 189 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 TMEM126AQ9H061 195 aa8.57□□□□□ -1.04
VAMP4-203ENST00000474047 C20orf202A1L168 122 aa8.56□□□□□ -1.04
VAMP4-203ENST00000474047 TMEM238C9JI98 176 aa8.56□□□□□ -1.04
VAMP4-203ENST00000474047 NCR3O14931 201 aa8.56□□□□□ -1.04
VAMP4-203ENST00000474047 IGKV2D-26A0A0A0MRZ7 120 aa8.54□□□□□ -1.04
VAMP4-203ENST00000474047 RPL13AP40429 203 aaKnown RBP8.54□□□□□ -1.04
VAMP4-203ENST00000474047 S100A12P80511 92 aa8.54□□□□□ -1.04
VAMP4-203ENST00000474047 KRTAP1-4P0C5Y4 121 aa8.53□□□□□ -1.04
VAMP4-203ENST00000474047 PRLHP81277 87 aa8.53□□□□□ -1.04
VAMP4-203ENST00000474047 A0A0J9YXY3 114 aa8.52□□□□□ -1.05
VAMP4-203ENST00000474047 S100A2P29034 98 aa8.51□□□□□ -1.05
VAMP4-203ENST00000474047 S100A6P06703 90 aa8.51□□□□□ -1.05
VAMP4-203ENST00000474047 NPC2P61916 151 aa8.51□□□□□ -1.05
VAMP4-203ENST00000474047 LOC107984156A0A0G2JMH3 177 aa8.5□□□□□ -1.05
VAMP4-203ENST00000474047 ZNF815PA8K554 130 aa8.5□□□□□ -1.05
VAMP4-203ENST00000474047 PRYO14603 147 aa8.5□□□□□ -1.05
VAMP4-203ENST00000474047 AKR1D1P51857 326 aa8.5□□□□□ -1.05
VAMP4-203ENST00000474047 KRTAP13-1Q8IUC0 172 aa8.5□□□□□ -1.05
VAMP4-203ENST00000474047 ARL17AQ8IVW1 177 aa8.5□□□□□ -1.05
VAMP4-203ENST00000474047 TRBV10-3A0A0K0K1G6 114 aa8.49□□□□□ -1.05
VAMP4-203ENST00000474047 CRYGAP11844 174 aa8.49□□□□□ -1.05
VAMP4-203ENST00000474047 S100A7L2Q5SY68 101 aa8.49□□□□□ -1.05
VAMP4-203ENST00000474047 HIGD2AQ9BW72 106 aa8.49□□□□□ -1.05
VAMP4-203ENST00000474047 SPANXB1Q9NS25 103 aaPredicted RBP8.49□□□□□ -1.05
VAMP4-203ENST00000474047 ETDCA0A1B0GVM5 59 aa8.48□□□□□ -1.05
VAMP4-203ENST00000474047 DDTP30046 118 aa8.48□□□□□ -1.05
VAMP4-203ENST00000474047 ADAMTSL4-AS1Q5T5F5 129 aa8.48□□□□□ -1.05
VAMP4-203ENST00000474047 ATOH7Q8N100 152 aa8.48□□□□□ -1.05
VAMP4-203ENST00000474047 KCNQ1DNQ9H478 68 aa8.48□□□□□ -1.05
VAMP4-203ENST00000474047 TRBV10-2A0A0K0K1G8 114 aa8.47□□□□□ -1.05
VAMP4-203ENST00000474047 NDUFC2O95298 119 aa8.46□□□□□ -1.05
VAMP4-203ENST00000474047 HIST3H2BBQ8N257 126 aa8.46□□□□□ -1.05
VAMP4-203ENST00000474047 TIMM17BO60830 172 aa8.46□□□□□ -1.06
VAMP4-203ENST00000474047 SCGB1D4Q6XE38 83 aa8.46□□□□□ -1.06
VAMP4-203ENST00000474047 TTTY13Q9BZ97 58 aa8.46□□□□□ -1.06
VAMP4-203ENST00000474047 ANAPC11Q9NYG5 84 aa8.46□□□□□ -1.06
VAMP4-203ENST00000474047 LINC00337Q8N6G1 96 aa8.45□□□□□ -1.06
VAMP4-203ENST00000474047 TYMSOSQ8TAI1 123 aa8.45□□□□□ -1.06
VAMP4-203ENST00000474047 SOSTDC1Q6X4U4 206 aa8.44□□□□□ -1.06
VAMP4-203ENST00000474047 HIST1H2BLQ99880 126 aa8.44□□□□□ -1.06
VAMP4-203ENST00000474047 TNXBP22105 4242 aa8.44□□□□□ -1.06
VAMP4-203ENST00000474047 LINC00308Q8TCZ7 52 aa8.43□□□□□ -1.06
VAMP4-203ENST00000474047 A0A087X002 238 aa8.43□□□□□ -1.06
VAMP4-203ENST00000474047 FAM229BQ4G0N7 80 aa8.43□□□□□ -1.06
VAMP4-203ENST00000474047 ANKRD39Q53RE8 183 aa8.43□□□□□ -1.06
VAMP4-203ENST00000474047 EIF4EBP3O60516 100 aaPredicted RBP8.42□□□□□ -1.06
VAMP4-203ENST00000474047 SPRR1AP35321 89 aa8.42□□□□□ -1.06
VAMP4-203ENST00000474047 SNRPEP62304 92 aaKnown RBP8.42□□□□□ -1.06
VAMP4-203ENST00000474047 OR13C6PQ8NH95 151 aa8.42□□□□□ -1.06
VAMP4-203ENST00000474047 LITAFQ99732 161 aa8.42□□□□□ -1.06
VAMP4-203ENST00000474047 CBY1Q9Y3M2 126 aa8.42□□□□□ -1.06
VAMP4-203ENST00000474047 ZNF706Q9Y5V0 76 aaPredicted RBP8.42□□□□□ -1.06
VAMP4-203ENST00000474047 HSBP1L1C9JCN9 74 aa8.41□□□□□ -1.06
VAMP4-203ENST00000474047 SPANXCQ9NY87 97 aa8.41□□□□□ -1.06
VAMP4-203ENST00000474047 TRAV23DV6A0A075B6W5 121 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 151.3 ms