RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TMEM238C9JI98 176 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BKO60814 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BJP06899 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BOP23527 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BBP33778 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BDP58876 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 LINC00310P59036 64 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BCP62807 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 PRLHP81277 87 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST2H2BEQ16778 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 BAGE3Q86Y29 109 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BHQ93079 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BNQ99877 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 HIST1H2BMQ99879 126 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 TMEM126AQ9H061 195 aa10.99□□□□□ -0.65
CCDC88B-206ENST00000473405 FAM229BQ4G0N7 80 aa10.98□□□□□ -0.65
CCDC88B-206ENST00000473405 TMEM170BQ5T4T1 132 aa10.98□□□□□ -0.65
CCDC88B-206ENST00000473405 M0R378 163 aa10.96□□□□□ -0.65
CCDC88B-206ENST00000473405 SFTA2Q6UW10 78 aa10.96□□□□□ -0.65
CCDC88B-206ENST00000473405 RPL24P83731 157 aaKnown RBP10.95□□□□□ -0.66
CCDC88B-206ENST00000473405 FAM19A1Q7Z5A9 133 aa10.95□□□□□ -0.66
CCDC88B-206ENST00000473405 CHTOPQ9Y3Y2 248 aaKnown RBP10.94□□□□□ -0.66
CCDC88B-206ENST00000473405 TMEM223A0PJW6 202 aa10.92□□□□□ -0.66
CCDC88B-206ENST00000473405 COA6Q5JTJ3 125 aaKnown RBP10.92□□□□□ -0.66
CCDC88B-206ENST00000473405 LINC00304Q8N9R0 145 aa10.92□□□□□ -0.66
CCDC88B-206ENST00000473405 TRAV12-1A0A0B4J245 112 aa10.9□□□□□ -0.66
CCDC88B-206ENST00000473405 SERF1AO75920 110 aa10.9□□□□□ -0.66
CCDC88B-206ENST00000473405 CHCHD1Q96BP2 118 aaKnown RBP10.9□□□□□ -0.66
CCDC88B-206ENST00000473405 PLEKHB2Q96CS7 222 aa10.9□□□□□ -0.66
CCDC88B-206ENST00000473405 LINC00158P58513 81 aa10.89□□□□□ -0.67
CCDC88B-206ENST00000473405 IFI27L1Q96BM0 104 aa10.89□□□□□ -0.67
CCDC88B-206ENST00000473405 RETNLBQ9BQ08 111 aa10.89□□□□□ -0.67
CCDC88B-206ENST00000473405 IGKV2D-26A0A0A0MRZ7 120 aa10.88□□□□□ -0.67
CCDC88B-206ENST00000473405 A0A0U1RRA0 63 aa10.88□□□□□ -0.67
CCDC88B-206ENST00000473405 C3orf22Q8N5N4 141 aa10.86□□□□□ -0.67
CCDC88B-206ENST00000473405 SMIM13P0DJ93 91 aa10.85□□□□□ -0.67
CCDC88B-206ENST00000473405 HIGD2AQ9BW72 106 aa10.85□□□□□ -0.67
CCDC88B-206ENST00000473405 FAM19A2Q8N3H0 131 aa10.83□□□□□ -0.68
CCDC88B-206ENST00000473405 SPRR4Q96PI1 79 aa10.83□□□□□ -0.68
CCDC88B-206ENST00000473405 HSBP1O75506 76 aa10.82□□□□□ -0.68
CCDC88B-206ENST00000473405 PRYO14603 147 aa10.81□□□□□ -0.68
CCDC88B-206ENST00000473405 CTAG1AP78358 180 aa10.81□□□□□ -0.68
CCDC88B-206ENST00000473405 BOD1L2Q8IYS8 172 aa10.81□□□□□ -0.68
CCDC88B-206ENST00000473405 MIR7-3HGQ8N6C7 128 aa10.81□□□□□ -0.68
CCDC88B-206ENST00000473405 MUC17Q685J3 4493 aa10.8□□□□□ -0.68
CCDC88B-206ENST00000473405 NCR3O14931 201 aa10.8□□□□□ -0.68
CCDC88B-206ENST00000473405 TPRXLQ17RH7 258 aa10.8□□□□□ -0.68
CCDC88B-206ENST00000473405 MEIG1Q5JSS6 88 aa10.8□□□□□ -0.68
CCDC88B-206ENST00000473405 FAT4Q6V0I7 4981 aa10.79□□□□□ -0.68
CCDC88B-206ENST00000473405 SPRR1AP35321 89 aa10.79□□□□□ -0.68
CCDC88B-206ENST00000473405 HERV-K104P63124 156 aa10.79□□□□□ -0.68
CCDC88B-206ENST00000473405 KCNQ1DNQ9H478 68 aa10.79□□□□□ -0.68
CCDC88B-206ENST00000473405 NDUFA12Q9UI09 145 aa10.79□□□□□ -0.68
CCDC88B-206ENST00000473405 C5orf52A6NGY3 159 aa10.78□□□□□ -0.68
CCDC88B-206ENST00000473405 KRTAP4-16G5E9R7 235 aaPredicted RBP10.78□□□□□ -0.68
CCDC88B-206ENST00000473405 TSPEAR-AS2P59090 65 aa10.78□□□□□ -0.68
CCDC88B-206ENST00000473405 HIST3H2BBQ8N257 126 aa10.78□□□□□ -0.68
CCDC88B-206ENST00000473405 H0Y8G0 127 aa10.77□□□□□ -0.69
CCDC88B-206ENST00000473405 LINC00337Q8N6G1 96 aa10.77□□□□□ -0.69
CCDC88B-206ENST00000473405 IGLV7-46A0A075B6I9 117 aa10.76□□□□□ -0.69
CCDC88B-206ENST00000473405 ZNF706Q9Y5V0 76 aaPredicted RBP10.76□□□□□ -0.69
CCDC88B-206ENST00000473405 TRBV10-3A0A0K0K1G6 114 aa10.75□□□□□ -0.69
CCDC88B-206ENST00000473405 A0A0U1RQV1 116 aa10.75□□□□□ -0.69
CCDC88B-206ENST00000473405 MYMXA0A1B0GTQ4 84 aa10.74□□□□□ -0.69
CCDC88B-206ENST00000473405 SNRPEP62304 92 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-206ENST00000473405 SMCR5Q8TEV8 140 aa10.74□□□□□ -0.69
CCDC88B-206ENST00000473405 TMA7Q9Y2S6 64 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-206ENST00000473405 LINC00587B1AMM8 73 aa10.73□□□□□ -0.69
CCDC88B-206ENST00000473405 LEPROTL1O95214 131 aa10.73□□□□□ -0.69
CCDC88B-206ENST00000473405 S100A6P06703 90 aa10.73□□□□□ -0.69
CCDC88B-206ENST00000473405 DAND5Q8N907 189 aa10.73□□□□□ -0.69
CCDC88B-206ENST00000473405 CDIP1Q9H305 208 aa10.73□□□□□ -0.69
CCDC88B-206ENST00000473405 ETDCA0A1B0GVM5 59 aa10.72□□□□□ -0.69
CCDC88B-206ENST00000473405 SPAG11AQ6PDA7 123 aa10.72□□□□□ -0.69
CCDC88B-206ENST00000473405 HIST1H2BLQ99880 126 aa10.72□□□□□ -0.69
CCDC88B-206ENST00000473405 MAP1LC3CQ9BXW4 147 aa10.72□□□□□ -0.69
CCDC88B-206ENST00000473405 LOC107984156A0A0G2JMH3 177 aa10.71□□□□□ -0.69
CCDC88B-206ENST00000473405 LEPROTO15243 131 aa10.71□□□□□ -0.69
CCDC88B-206ENST00000473405 PLNP26678 52 aa10.71□□□□□ -0.69
CCDC88B-206ENST00000473405 ARL17AQ8IVW1 177 aa10.71□□□□□ -0.69
CCDC88B-206ENST00000473405 PPDPFQ9H3Y8 114 aa10.71□□□□□ -0.69
CCDC88B-206ENST00000473405 FABP4P15090 132 aa10.7□□□□□ -0.7
CCDC88B-206ENST00000473405 LINC00483Q53H64 154 aa10.7□□□□□ -0.7
CCDC88B-206ENST00000473405 Q8NBF4 154 aa10.7□□□□□ -0.7
CCDC88B-206ENST00000473405 HSPB8Q9UJY1 196 aa10.69□□□□□ -0.7
CCDC88B-206ENST00000473405 B5MCH6 92 aa10.68□□□□□ -0.7
CCDC88B-206ENST00000473405 J3QQQ9 107 aa10.68□□□□□ -0.7
CCDC88B-206ENST00000473405 LCE2AQ5TA79 106 aaPredicted RBP10.68□□□□□ -0.7
CCDC88B-206ENST00000473405 TRBV10-2A0A0K0K1G8 114 aa10.67□□□□□ -0.7
CCDC88B-206ENST00000473405 PMCHL2Q9BQD1 86 aa10.67□□□□□ -0.7
CCDC88B-206ENST00000473405 ERC2-IT1O76042 136 aa10.66□□□□□ -0.7
CCDC88B-206ENST00000473405 DPM2O94777 84 aa10.66□□□□□ -0.7
CCDC88B-206ENST00000473405 DDTP30046 118 aa10.66□□□□□ -0.7
CCDC88B-206ENST00000473405 C3orf79P0CE67 100 aa10.65□□□□□ -0.7
CCDC88B-206ENST00000473405 NMUP48645 174 aa10.65□□□□□ -0.7
CCDC88B-206ENST00000473405 C4orf48Q5BLP8 95 aa10.65□□□□□ -0.7
CCDC88B-206ENST00000473405 FP248Q71RG6 208 aaPredicted RBP10.65□□□□□ -0.7
CCDC88B-206ENST00000473405 Q9BRP9 147 aa10.65□□□□□ -0.7
CCDC88B-206ENST00000473405 SYS1-DBNDD2H3BUS1 97 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms