RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 SRSF9Q13242 221 aaKnown RBP eCLIP12.22□□□□□ -0.45
PSPC1-203ENST00000471658 Q8NDZ9 215 aa12.22□□□□□ -0.45
PSPC1-203ENST00000471658 LINC00308Q8TCZ7 52 aa12.22□□□□□ -0.45
PSPC1-203ENST00000471658 SPANXB1Q9NS25 103 aaPredicted RBP12.22□□□□□ -0.45
PSPC1-203ENST00000471658 FAM168BA1KXE4 195 aa12.21□□□□□ -0.46
PSPC1-203ENST00000471658 MUSTN1Q8IVN3 82 aa12.21□□□□□ -0.46
PSPC1-203ENST00000471658 TSTD3H0UI37 97 aa12.2□□□□□ -0.46
PSPC1-203ENST00000471658 HNRNPA3P51991 378 aaKnown RBP12.19□□□□□ -0.46
PSPC1-203ENST00000471658 HIST1H4GQ99525 98 aa12.19□□□□□ -0.46
PSPC1-203ENST00000471658 A0A1W2PNN7 141 aa12.19□□□□□ -0.46
PSPC1-203ENST00000471658 KRTAP7-1Q8IUC3 87 aa12.19□□□□□ -0.46
PSPC1-203ENST00000471658 SPACA4Q8TDM5 124 aa12.19□□□□□ -0.46
PSPC1-203ENST00000471658 DPH3Q96FX2 82 aa12.19□□□□□ -0.46
PSPC1-203ENST00000471658 PKIGQ9Y2B9 76 aa12.19□□□□□ -0.46
PSPC1-203ENST00000471658 SERTAD4-AS1Q5TG53 156 aa12.18□□□□□ -0.46
PSPC1-203ENST00000471658 LOC107984156A0A0G2JMH3 177 aa12.16□□□□□ -0.46
PSPC1-203ENST00000471658 PRR3P79522 188 aaKnown RBP12.16□□□□□ -0.46
PSPC1-203ENST00000471658 Q6ZVH6 145 aa12.16□□□□□ -0.46
PSPC1-203ENST00000471658 ARL17AQ8IVW1 177 aa12.16□□□□□ -0.46
PSPC1-203ENST00000471658 HAMPP81172 84 aa12.15□□□□□ -0.46
PSPC1-203ENST00000471658 LINC00474Q9P2X8 69 aa12.15□□□□□ -0.46
PSPC1-203ENST00000471658 IFITM1P13164 125 aa12.15□□□□□ -0.47
PSPC1-203ENST00000471658 Q6ZSA8 131 aa12.15□□□□□ -0.47
PSPC1-203ENST00000471658 FAM19A5Q7Z5A7 132 aaPredicted RBP12.15□□□□□ -0.47
PSPC1-203ENST00000471658 A0A087WYN8 130 aa12.14□□□□□ -0.47
PSPC1-203ENST00000471658 CTAG1AP78358 180 aa12.14□□□□□ -0.47
PSPC1-203ENST00000471658 VPREB1P12018 145 aa12.13□□□□□ -0.47
PSPC1-203ENST00000471658 APOBP04114 4563 aaKnown RBP12.12□□□□□ -0.47
PSPC1-203ENST00000471658 HSD52Q0P140 79 aa12.11□□□□□ -0.47
PSPC1-203ENST00000471658 TAL2Q16559 108 aa12.11□□□□□ -0.47
PSPC1-203ENST00000471658 PLA2G2DQ9UNK4 145 aa12.11□□□□□ -0.47
PSPC1-203ENST00000471658 DDTP30046 118 aa12.11□□□□□ -0.47
PSPC1-203ENST00000471658 CEND1Q8N111 149 aa12.11□□□□□ -0.47
PSPC1-203ENST00000471658 A4D1N5 150 aa12.1□□□□□ -0.47
PSPC1-203ENST00000471658 NCR3O14931 201 aa12.1□□□□□ -0.47
PSPC1-203ENST00000471658 CIRBP-AS1Q8TBR5 109 aa12.1□□□□□ -0.47
PSPC1-203ENST00000471658 PLAC8Q9NZF1 115 aa12.09□□□□□ -0.47
PSPC1-203ENST00000471658 C22orf24Q9Y442 160 aa12.09□□□□□ -0.47
PSPC1-203ENST00000471658 FXYD2P54710 66 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 RPL24P83731 157 aaKnown RBP12.08□□□□□ -0.48
PSPC1-203ENST00000471658 SCXQ7RTU7 201 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 COPS9Q8WXC6 57 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 IGKV2-28A0A075B6P5 120 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 PCP4L1A6NKN8 68 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 IGKV2D-28P01615 120 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 PPDPFQ9H3Y8 114 aa12.08□□□□□ -0.48
PSPC1-203ENST00000471658 NDUFC2O95298 119 aa12.07□□□□□ -0.48
PSPC1-203ENST00000471658 PHF5AQ7RTV0 110 aaKnown RBP12.07□□□□□ -0.48
PSPC1-203ENST00000471658 IGLV5-37A0A075B6J1 123 aa12.06□□□□□ -0.48
PSPC1-203ENST00000471658 GAGE10A6NGK3 116 aa12.06□□□□□ -0.48
PSPC1-203ENST00000471658 EPM2AB3EWF7 344 aa12.06□□□□□ -0.48
PSPC1-203ENST00000471658 M0QXV9 152 aa12.06□□□□□ -0.48
PSPC1-203ENST00000471658 HINT1P49773 126 aaPredicted RBP12.06□□□□□ -0.48
PSPC1-203ENST00000471658 XGP55808 180 aa12.06□□□□□ -0.48
PSPC1-203ENST00000471658 NKAPP1Q8N9T2 125 aa12.06□□□□□ -0.48
PSPC1-203ENST00000471658 C7orf33Q8WU49 177 aa12.04□□□□□ -0.48
PSPC1-203ENST00000471658 BVES-AS1Q5T3Y7 98 aa12.04□□□□□ -0.48
PSPC1-203ENST00000471658 LINC00167Q96N53 147 aa12.04□□□□□ -0.48
PSPC1-203ENST00000471658 M0R378 163 aa12.03□□□□□ -0.48
PSPC1-203ENST00000471658 MRPL55Q7Z7F7 128 aaKnown RBP12.02□□□□□ -0.49
PSPC1-203ENST00000471658 LINC00337Q8N6G1 96 aa12.02□□□□□ -0.49
PSPC1-203ENST00000471658 RPL37AP8A6NKH3 93 aa12.01□□□□□ -0.49
PSPC1-203ENST00000471658 CFC1BP0CG36 223 aa12.01□□□□□ -0.49
PSPC1-203ENST00000471658 CFC1P0CG37 223 aa12.01□□□□□ -0.49
PSPC1-203ENST00000471658 KRTAP11-1Q8IUC1 163 aa12.01□□□□□ -0.49
PSPC1-203ENST00000471658 TRBV10-2A0A0K0K1G8 114 aa12□□□□□ -0.49
PSPC1-203ENST00000471658 OR13C6PQ8NH95 151 aa11.99□□□□□ -0.49
PSPC1-203ENST00000471658 NHP2Q9NX24 153 aaKnown RBP11.99□□□□□ -0.49
PSPC1-203ENST00000471658 TRBV10-3A0A0K0K1G6 114 aa11.98□□□□□ -0.49
PSPC1-203ENST00000471658 RYR1P21817 5038 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 TMEM238LA0A1B0GVL6 79 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 A6NDN8 102 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 A6NJY4 79 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 LBHQ53QV2 105 aaPredicted RBP11.97□□□□□ -0.49
PSPC1-203ENST00000471658 K7ERJ3 54 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 M0R143 59 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 BATFQ16520 125 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 S100A7L2Q5SY68 101 aa11.97□□□□□ -0.49
PSPC1-203ENST00000471658 IGLV1-50A0A075B6I6 118 aa11.96□□□□□ -0.5
PSPC1-203ENST00000471658 IGLV6-57P01721 117 aa11.96□□□□□ -0.5
PSPC1-203ENST00000471658 UBE2BP63146 152 aa11.96□□□□□ -0.5
PSPC1-203ENST00000471658 KIAA1109Q2LD37 5005 aa11.96□□□□□ -0.5
PSPC1-203ENST00000471658 TRAV13-2A0A0B4J235 113 aa11.94□□□□□ -0.5
PSPC1-203ENST00000471658 SMR3BP02814 79 aaPredicted RBP11.94□□□□□ -0.5
PSPC1-203ENST00000471658 RAB37Q96AX2 223 aa11.94□□□□□ -0.5
PSPC1-203ENST00000471658 A0A0B4J2C4 111 aa11.93□□□□□ -0.5
PSPC1-203ENST00000471658 BIRC6Q9NR09 4857 aa11.93□□□□□ -0.5
PSPC1-203ENST00000471658 A0A1B0GWB2 263 aa11.93□□□□□ -0.5
PSPC1-203ENST00000471658 RPL13AP40429 203 aaKnown RBP11.93□□□□□ -0.5
PSPC1-203ENST00000471658 FAT1Q14517 4588 aa11.92□□□□□ -0.5
PSPC1-203ENST00000471658 HSPG2P98160 4391 aa11.92□□□□□ -0.5
PSPC1-203ENST00000471658 TMEM126AQ9H061 195 aa11.92□□□□□ -0.5
PSPC1-203ENST00000471658 H7C2G1 150 aa11.91□□□□□ -0.5
PSPC1-203ENST00000471658 SNHG12Q9BXW3 62 aa11.91□□□□□ -0.5
PSPC1-203ENST00000471658 CDK2AP2O75956 126 aa11.9□□□□□ -0.5
PSPC1-203ENST00000471658 PRO1854Q9UHT4 67 aa11.9□□□□□ -0.5
PSPC1-203ENST00000471658 KCNQ1DNQ9H478 68 aa11.89□□□□□ -0.51
PSPC1-203ENST00000471658 PSORS1C2Q9UIG4 136 aa11.89□□□□□ -0.51
PSPC1-203ENST00000471658 TRAV23DV6A0A075B6W5 121 aa11.88□□□□□ -0.51
PSPC1-203ENST00000471658 SMIM11BQ8TCY0 68 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms