RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.76□□□□□ -1.49
SF3A1-206ENST00000471037 TRBV30A0A0K0K1B3 111 aa5.76□□□□□ -1.49
SF3A1-206ENST00000471037 CNBPP62633 177 aaKnown RBP5.76□□□□□ -1.49
SF3A1-206ENST00000471037 C2orf82Q6UX34 121 aa5.76□□□□□ -1.49
SF3A1-206ENST00000471037 UNQ6190/PRO20217Q6UXQ8 127 aa5.76□□□□□ -1.49
SF3A1-206ENST00000471037 SCGB1D4Q6XE38 83 aa5.76□□□□□ -1.49
SF3A1-206ENST00000471037 CARD19Q96LW7 228 aa5.76□□□□□ -1.49
SF3A1-206ENST00000471037 UQCR10Q9UDW1 63 aa5.76□□□□□ -1.49
SF3A1-206ENST00000471037 A0A0J9YXY3 114 aa5.75□□□□□ -1.49
SF3A1-206ENST00000471037 TSTD3H0UI37 97 aa5.75□□□□□ -1.49
SF3A1-206ENST00000471037 TIMM17BO60830 172 aa5.75□□□□□ -1.49
SF3A1-206ENST00000471037 RNF151Q2KHN1 245 aa5.75□□□□□ -1.49
SF3A1-206ENST00000471037 SLPIP03973 132 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 COX17Q14061 63 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 MEIG1Q5JSS6 88 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 C10orf25Q5T742 122 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 MIEN1Q9BRT3 115 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 PRO1933Q9H354 126 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 C6orf48Q9UBA6 75 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 ERG28Q9UKR5 140 aa5.74□□□□□ -1.49
SF3A1-206ENST00000471037 TMEM238C9JI98 176 aa5.73□□□□□ -1.49
SF3A1-206ENST00000471037 HIGD1BQ9P298 99 aa5.73□□□□□ -1.49
SF3A1-206ENST00000471037 PKIGQ9Y2B9 76 aa5.73□□□□□ -1.49
SF3A1-206ENST00000471037 TNXBP22105 4242 aa5.73□□□□□ -1.49
SF3A1-206ENST00000471037 LRP2P98164 4655 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 TLX1NBP0CAT3 122 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 LINC00158P58513 81 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 C2orf91Q6ZV80 131 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 Q6ZVH6 145 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 SPACA4Q8TDM5 124 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 TP73-AS1Q9UF72 201 aa5.72□□□□□ -1.49
SF3A1-206ENST00000471037 A0A087WYN8 130 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 NDUFC2-KCTD14E9PQ53 114 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 SMIM13P0DJ93 91 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 PFN2P35080 140 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 C9orf116Q5BN46 136 aaPredicted RBP5.71□□□□□ -1.5
SF3A1-206ENST00000471037 LITAFQ99732 161 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 SPANXDQ9BXN6 97 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 SPANXB1Q9NS25 103 aaPredicted RBP5.71□□□□□ -1.5
SF3A1-206ENST00000471037 SPANXCQ9NY87 97 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 PLAC8Q9NZF1 115 aa5.71□□□□□ -1.5
SF3A1-206ENST00000471037 LOC107984640A0A0U1RRK4 108 aa5.7□□□□□ -1.5
SF3A1-206ENST00000471037 CHTF8P0CG12 524 aa5.7□□□□□ -1.5
SF3A1-206ENST00000471037 MIR7-3HGQ8N6C7 128 aa5.7□□□□□ -1.5
SF3A1-206ENST00000471037 COPS9Q8WXC6 57 aa5.7□□□□□ -1.5
SF3A1-206ENST00000471037 A0A0U1RRA0 63 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 IFITM1P13164 125 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 SRSF9Q13242 221 aaKnown RBP eCLIP5.69□□□□□ -1.5
SF3A1-206ENST00000471037 TAL2Q16559 108 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 ADAMTSL4-AS1Q5T5F5 129 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 C7orf33Q8WU49 177 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 LINC01600Q96MT4 127 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 PPDPFQ9H3Y8 114 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 RNF213Q63HN8 5207 aa5.69□□□□□ -1.5
SF3A1-206ENST00000471037 DDTP30046 118 aa5.68□□□□□ -1.5
SF3A1-206ENST00000471037 PTTG1IPP53801 180 aa5.68□□□□□ -1.5
SF3A1-206ENST00000471037 RPL18AQ02543 176 aaKnown RBP5.68□□□□□ -1.5
SF3A1-206ENST00000471037 HSD52Q0P140 79 aa5.68□□□□□ -1.5
SF3A1-206ENST00000471037 Q6ZRP5 223 aa5.68□□□□□ -1.5
SF3A1-206ENST00000471037 DPH3Q96FX2 82 aa5.68□□□□□ -1.5
SF3A1-206ENST00000471037 HIST1H4GQ99525 98 aa5.68□□□□□ -1.5
SF3A1-206ENST00000471037 LCE2CQ5TA81 110 aa5.67□□□□□ -1.5
SF3A1-206ENST00000471037 DAND5Q8N907 189 aa5.67□□□□□ -1.5
SF3A1-206ENST00000471037 LINC00308Q8TCZ7 52 aa5.67□□□□□ -1.5
SF3A1-206ENST00000471037 SND1-IT1Q9HBX3 110 aa5.67□□□□□ -1.5
SF3A1-206ENST00000471037 LOC107984156A0A0G2JMH3 177 aa5.66□□□□□ -1.5
SF3A1-206ENST00000471037 GHRHP01286 108 aa5.66□□□□□ -1.5
SF3A1-206ENST00000471037 PRR3P79522 188 aaKnown RBP5.66□□□□□ -1.5
SF3A1-206ENST00000471037 GAGE2EQ4V326 116 aa5.66□□□□□ -1.5
SF3A1-206ENST00000471037 ARL17AQ8IVW1 177 aa5.66□□□□□ -1.5
SF3A1-206ENST00000471037 LINC00474Q9P2X8 69 aa5.66□□□□□ -1.5
SF3A1-206ENST00000471037 GAGE2DQ9UEU5 116 aa5.66□□□□□ -1.5
SF3A1-206ENST00000471037 A0A096LNI7 61 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 CTAG1AP78358 180 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 RPL24P83731 157 aaKnown RBP5.65□□□□□ -1.5
SF3A1-206ENST00000471037 GAGE2BQ13066 116 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 SOSTDC1Q6X4U4 206 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 MUSTN1Q8IVN3 82 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 CEND1Q8N111 149 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 XAGE1AQ9HD64 81 aa5.65□□□□□ -1.5
SF3A1-206ENST00000471037 TMEM238LA0A1B0GVL6 79 aa5.64□□□□□ -1.51
SF3A1-206ENST00000471037 M0R143 59 aa5.64□□□□□ -1.51
SF3A1-206ENST00000471037 NPC2P61916 151 aa5.64□□□□□ -1.51
SF3A1-206ENST00000471037 IGKV2-24A0A0C4DH68 120 aa5.63□□□□□ -1.51
SF3A1-206ENST00000471037 PCP4L1A6NKN8 68 aa5.63□□□□□ -1.51
SF3A1-206ENST00000471037 EIF4EBP3O60516 100 aaPredicted RBP5.63□□□□□ -1.51
SF3A1-206ENST00000471037 NDUFC2O95298 119 aa5.63□□□□□ -1.51
SF3A1-206ENST00000471037 KRTAP10-8P60410 259 aa5.63□□□□□ -1.51
SF3A1-206ENST00000471037 C9orf129Q5T035 196 aaKnown RBP5.63□□□□□ -1.51
SF3A1-206ENST00000471037 SPINK6Q6UWN8 80 aa5.63□□□□□ -1.51
SF3A1-206ENST00000471037 A4D1N5 150 aa5.62□□□□□ -1.51
SF3A1-206ENST00000471037 REG3GQ6UW15 175 aa5.62□□□□□ -1.51
SF3A1-206ENST00000471037 IGLV5-37A0A075B6J1 123 aa5.61□□□□□ -1.51
SF3A1-206ENST00000471037 VPREB1P12018 145 aa5.61□□□□□ -1.51
SF3A1-206ENST00000471037 FXYD2P54710 66 aa5.61□□□□□ -1.51
SF3A1-206ENST00000471037 BVES-AS1Q5T3Y7 98 aa5.61□□□□□ -1.51
SF3A1-206ENST00000471037 TRBV10-2A0A0K0K1G8 114 aa5.6□□□□□ -1.51
SF3A1-206ENST00000471037 HINT1P49773 126 aaPredicted RBP5.6□□□□□ -1.51
SF3A1-206ENST00000471037 NKAPP1Q8N9T2 125 aa5.6□□□□□ -1.51
SF3A1-206ENST00000471037 A0A0B4J2C4 111 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms