RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-210	ENST00000463041	LINC00587	B1AMM8	73 aa		4.29	□□□□□ -1.72
PTPRF-210	ENST00000463041	ATP6V1G1	O75348	118 aa		4.29	□□□□□ -1.72
PTPRF-210	ENST00000463041	HSBP1	O75506	76 aa		4.29	□□□□□ -1.72
PTPRF-210	ENST00000463041	TMEM126A	Q9H061	195 aa		4.29	□□□□□ -1.72
PTPRF-210	ENST00000463041		M0R378	163 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	TSPAN13	O95857	204 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	HERV-K104	P63124	156 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	CTAG1A	P78358	180 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	FAM19A1	Q7Z5A9	133 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	FAM19A2	Q8N3H0	131 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	ANAPC11	Q9NYG5	84 aa		4.28	□□□□□ -1.72
PTPRF-210	ENST00000463041	IGKV2D-26	A0A0A0MRZ7	120 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041		A0A0U1RRA0	63 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	MYMX	A0A1B0GTQ4	84 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	TMEM238	C9JI98	176 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	TRGC2	P03986	189 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	SMIM13	P0DJ93	91 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	KRTAP13-2	Q52LG2	175 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	CBLN2	Q8IUK8	224 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041		Q8NDZ9	215 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	PLEKHB2	Q96CS7	222 aa		4.27	□□□□□ -1.73
PTPRF-210	ENST00000463041	LEPROTL1	O95214	131 aa		4.26	□□□□□ -1.73
PTPRF-210	ENST00000463041	PRLH	P81277	87 aa		4.26	□□□□□ -1.73
PTPRF-210	ENST00000463041	MEIG1	Q5JSS6	88 aa		4.26	□□□□□ -1.73
PTPRF-210	ENST00000463041	MAP1LC3C	Q9BXW4	147 aa		4.26	□□□□□ -1.73
PTPRF-210	ENST00000463041	NDUFA12	Q9UI09	145 aa		4.26	□□□□□ -1.73
PTPRF-210	ENST00000463041	LEPROT	O15243	131 aa		4.25	□□□□□ -1.73
PTPRF-210	ENST00000463041	BOD1L2	Q8IYS8	172 aa		4.25	□□□□□ -1.73
PTPRF-210	ENST00000463041	MIR7-3HG	Q8N6C7	128 aa		4.25	□□□□□ -1.73
PTPRF-210	ENST00000463041	LINC00304	Q8N9R0	145 aa		4.25	□□□□□ -1.73
PTPRF-210	ENST00000463041	KCNQ1DN	Q9H478	68 aa		4.25	□□□□□ -1.73
PTPRF-210	ENST00000463041	HSPB8	Q9UJY1	196 aa		4.25	□□□□□ -1.73
PTPRF-210	ENST00000463041	LOC107984156	A0A0G2JMH3	177 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041		H0Y8G0	127 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	PRY	O14603	147 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	SERF1A	O75920	110 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	PLN	P26678	52 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	S100A12	P80511	92 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	ARL17A	Q8IVW1	177 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	LINC00337	Q8N6G1	96 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	HIGD2A	Q9BW72	106 aa		4.24	□□□□□ -1.73
PTPRF-210	ENST00000463041	COLCA2	A8K830	154 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	DPM2	O94777	84 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	FABP4	P15090	132 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	SPRR1A	P35321	89 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	LINC00310	P59036	64 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	HERVK_113	P61574	105 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	SPAG11A	Q6PDA7	123 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	SLC7A5P1	Q8MH63	180 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	ZNF706	Q9Y5V0	76 aa	Predicted RBP	4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	MUC2	Q02817	5179 aa		4.23	□□□□□ -1.73
PTPRF-210	ENST00000463041	TRBV10-2	A0A0K0K1G8	114 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041	ETDC	A0A1B0GVM5	59 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041		J3QQQ9	107 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041	IGKC	P01834	107 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041	NMU	P48645	174 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041	SMCR5	Q8TEV8	140 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041	SPRR4	Q96PI1	79 aa		4.22	□□□□□ -1.73
PTPRF-210	ENST00000463041	TRBV10-3	A0A0K0K1G6	114 aa		4.21	□□□□□ -1.74
PTPRF-210	ENST00000463041	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.21	□□□□□ -1.74
PTPRF-210	ENST00000463041	NCR3	O14931	201 aa		4.21	□□□□□ -1.74
PTPRF-210	ENST00000463041	C4orf48	Q5BLP8	95 aa		4.21	□□□□□ -1.74
PTPRF-210	ENST00000463041	C3orf22	Q8N5N4	141 aa		4.21	□□□□□ -1.74
PTPRF-210	ENST00000463041	NDUFC2	O95298	119 aa		4.2	□□□□□ -1.74
PTPRF-210	ENST00000463041	LGALS3	P17931	250 aa	Known RBP	4.2	□□□□□ -1.74
PTPRF-210	ENST00000463041	TSPEAR-AS2	P59090	65 aa		4.2	□□□□□ -1.74
PTPRF-210	ENST00000463041	PMCHL2	Q9BQD1	86 aa		4.2	□□□□□ -1.74
PTPRF-210	ENST00000463041	IGLV7-46	A0A075B6I9	117 aa		4.19	□□□□□ -1.74
PTPRF-210	ENST00000463041		B5MCH6	92 aa		4.19	□□□□□ -1.74
PTPRF-210	ENST00000463041	DDT	P30046	118 aa		4.19	□□□□□ -1.74
PTPRF-210	ENST00000463041	DAND5	Q8N907	189 aa		4.19	□□□□□ -1.74
PTPRF-210	ENST00000463041	MIEN1	Q9BRT3	115 aa		4.19	□□□□□ -1.74
PTPRF-210	ENST00000463041	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.19	□□□□□ -1.74
PTPRF-210	ENST00000463041		E9PLD3	99 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	IGLV6-57	P01721	117 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	TPRXL	Q17RH7	258 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	LINC00483	Q53H64	154 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	S100A7L2	Q5SY68	101 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	SSBP3-AS1	Q7Z2R9	100 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	RETNLB	Q9BQ08	111 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041	CBY1	Q9Y3M2	126 aa		4.18	□□□□□ -1.74
PTPRF-210	ENST00000463041		A0A0J9YXY3	114 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041		A0A0U1RQV1	116 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	SYS1-DBNDD2	H3BUS1	97 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	SPINK1	P00995	79 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	JOSD1	Q15040	202 aa	Predicted RBP	4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	ADAMTSL4-AS1	Q5T5F5	129 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	FP248	Q71RG6	208 aa	Predicted RBP	4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	CDIP1	Q9H305	208 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	PPDPF	Q9H3Y8	114 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	MUC17	Q685J3	4493 aa		4.17	□□□□□ -1.74
PTPRF-210	ENST00000463041	C5orf52	A6NGY3	159 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HIST1H2BK	O60814	126 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	ERC2-IT1	O76042	136 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HIST1H2BJ	P06899	126 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HIST1H2BO	P23527	126 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HIST1H2BB	P33778	126 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HINT1	P49773	126 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HIST1H2BD	P58876	126 aa		4.16	□□□□□ -1.74
PTPRF-210	ENST00000463041	HIST1H2BC	P62807	126 aa		4.16	□□□□□ -1.74

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