RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SMR3BP02814 79 aaPredicted RBP7.57□□□□□ -1.2
VPS52-213ENST00000461743 PLA2G1BP04054 148 aaKnown RBP7.57□□□□□ -1.2
VPS52-213ENST00000461743 ZC2HC1BQ5TFG8 222 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 Q6ZRU5 148 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 LINC00526Q96FQ7 95 aa7.57□□□□□ -1.2
VPS52-213ENST00000461743 CKS1BP61024 79 aa7.56□□□□□ -1.2
VPS52-213ENST00000461743 Q8IZM0 81 aa7.56□□□□□ -1.2
VPS52-213ENST00000461743 KRTAP4-5Q9BYR2 181 aa7.56□□□□□ -1.2
VPS52-213ENST00000461743 NHP2Q9NX24 153 aaKnown RBP7.56□□□□□ -1.2
VPS52-213ENST00000461743 PKHD1L1Q86WI1 4243 aa7.56□□□□□ -1.2
VPS52-213ENST00000461743 TRBV30A0A0K0K1B3 111 aa7.55□□□□□ -1.2
VPS52-213ENST00000461743 PANO1I0J062 215 aa7.55□□□□□ -1.2
VPS52-213ENST00000461743 K7ERJ3 54 aa7.55□□□□□ -1.2
VPS52-213ENST00000461743 PLAC8Q9NZF1 115 aa7.55□□□□□ -1.2
VPS52-213ENST00000461743 CDKN2A-AS1Q9UH64 79 aa7.55□□□□□ -1.2
VPS52-213ENST00000461743 PRO0461Q9UI25 63 aa7.55□□□□□ -1.2
VPS52-213ENST00000461743 A0A096LNI7 61 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 A0A0J9YXV3 536 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 PRSS2P07478 247 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 TLX1NBP0CAT3 122 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 CHTF8P0CG12 524 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 CXCL5P42830 114 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 KIAA0087Q14695 138 aa7.54□□□□□ -1.2
VPS52-213ENST00000461743 A0A087WYN8 130 aa7.53□□□□□ -1.2
VPS52-213ENST00000461743 IGKV2D-26A0A0A0MRZ7 120 aa7.53□□□□□ -1.2
VPS52-213ENST00000461743 IGKV2-24A0A0C4DH68 120 aa7.53□□□□□ -1.2
VPS52-213ENST00000461743 SMIM1B2RUZ4 78 aa7.52□□□□□ -1.21
VPS52-213ENST00000461743 PLNP26678 52 aa7.52□□□□□ -1.21
VPS52-213ENST00000461743 LYRM7Q5U5X0 104 aa7.52□□□□□ -1.21
VPS52-213ENST00000461743 TRAV12-1A0A0B4J245 112 aa7.51□□□□□ -1.21
VPS52-213ENST00000461743 H3BMG7 143 aa7.51□□□□□ -1.21
VPS52-213ENST00000461743 RPL18AQ02543 176 aaKnown RBP7.51□□□□□ -1.21
VPS52-213ENST00000461743 C6orf48Q9UBA6 75 aa7.51□□□□□ -1.21
VPS52-213ENST00000461743 ETDBQ3ZM63 59 aa7.5□□□□□ -1.21
VPS52-213ENST00000461743 UNQ6190/PRO20217Q6UXQ8 127 aa7.5□□□□□ -1.21
VPS52-213ENST00000461743 C7orf33Q8WU49 177 aa7.5□□□□□ -1.21
VPS52-213ENST00000461743 DPH3Q96FX2 82 aa7.5□□□□□ -1.21
VPS52-213ENST00000461743 TOMM7Q9P0U1 55 aa7.5□□□□□ -1.21
VPS52-213ENST00000461743 MYCBP2O75592 4640 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 A6NJY4 79 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 NDUFC2-KCTD14E9PQ53 114 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 F8VRH5 84 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 INAFM2P0DMQ5 153 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 RPL37AP61513 92 aaKnown RBP7.49□□□□□ -1.21
VPS52-213ENST00000461743 GAGE2BQ13066 116 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 C6orf226Q5I0X4 101 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 C10orf25Q5T742 122 aa7.49□□□□□ -1.21
VPS52-213ENST00000461743 TSPAN13O95857 204 aa7.48□□□□□ -1.21
VPS52-213ENST00000461743 ZNF22P17026 224 aaPredicted RBP7.48□□□□□ -1.21
VPS52-213ENST00000461743 KRTAP10-4P60372 401 aaPredicted RBP7.48□□□□□ -1.21
VPS52-213ENST00000461743 C2orf82Q6UX34 121 aa7.48□□□□□ -1.21
VPS52-213ENST00000461743 COX7B2Q8TF08 81 aa7.48□□□□□ -1.21
VPS52-213ENST00000461743 HIST1H4GQ99525 98 aa7.48□□□□□ -1.21
VPS52-213ENST00000461743 CDIP1Q9H305 208 aa7.48□□□□□ -1.21
VPS52-213ENST00000461743 FLG2Q5D862 2391 aaPredicted RBP7.48□□□□□ -1.21
VPS52-213ENST00000461743 IGLV5-39A0A0G2JS06 123 aa7.47□□□□□ -1.21
VPS52-213ENST00000461743 MYMXA0A1B0GTQ4 84 aa7.47□□□□□ -1.21
VPS52-213ENST00000461743 SPINK8P0C7L1 97 aa7.47□□□□□ -1.21
VPS52-213ENST00000461743 SFTA2Q6UW10 78 aa7.47□□□□□ -1.21
VPS52-213ENST00000461743 PPDPFLQ8WWR9 84 aa7.47□□□□□ -1.21
VPS52-213ENST00000461743 TTTY13Q9BZ97 58 aa7.47□□□□□ -1.21
VPS52-213ENST00000461743 Q6ZRP5 223 aa7.46□□□□□ -1.22
VPS52-213ENST00000461743 ERG28Q9UKR5 140 aa7.46□□□□□ -1.22
VPS52-213ENST00000461743 C11orf86A6NJI1 115 aa7.45□□□□□ -1.22
VPS52-213ENST00000461743 M0QXV9 152 aa7.45□□□□□ -1.22
VPS52-213ENST00000461743 DMBT1Q9UGM3 2413 aaPredicted RBP7.44□□□□□ -1.22
VPS52-213ENST00000461743 C9orf116Q5BN46 136 aaPredicted RBP7.44□□□□□ -1.22
VPS52-213ENST00000461743 TEN1Q86WV5 123 aa7.44□□□□□ -1.22
VPS52-213ENST00000461743 TRBV20-1A0A075B6N2 111 aa7.43□□□□□ -1.22
VPS52-213ENST00000461743 SMCPP49901 116 aaPredicted RBP7.43□□□□□ -1.22
VPS52-213ENST00000461743 TMEM170BQ5T4T1 132 aa7.43□□□□□ -1.22
VPS52-213ENST00000461743 FAT3Q8TDW7 4589 aa7.42□□□□□ -1.22
VPS52-213ENST00000461743 MT-ATP8P03928 68 aa7.42□□□□□ -1.22
VPS52-213ENST00000461743 PRR3P79522 188 aaKnown RBP7.42□□□□□ -1.22
VPS52-213ENST00000461743 GAGE2EQ4V326 116 aa7.42□□□□□ -1.22
VPS52-213ENST00000461743 GAGE2DQ9UEU5 116 aa7.42□□□□□ -1.22
VPS52-213ENST00000461743 A0A1W2PNN7 141 aa7.41□□□□□ -1.22
VPS52-213ENST00000461743 TMEM223A0PJW6 202 aa7.4□□□□□ -1.22
VPS52-213ENST00000461743 COX17Q14061 63 aa7.4□□□□□ -1.22
VPS52-213ENST00000461743 C9orf129Q5T035 196 aaKnown RBP7.4□□□□□ -1.22
VPS52-213ENST00000461743 ANAPC13Q9BS18 74 aa7.4□□□□□ -1.22
VPS52-213ENST00000461743 PSMB2P49721 201 aa7.39□□□□□ -1.23
VPS52-213ENST00000461743 HERVK_113P61574 105 aa7.39□□□□□ -1.23
VPS52-213ENST00000461743 ZNF815PA8K554 130 aa7.38□□□□□ -1.23
VPS52-213ENST00000461743 FAM19A5Q7Z5A7 132 aaPredicted RBP7.38□□□□□ -1.23
VPS52-213ENST00000461743 LRP1Q07954 4544 aaKnown RBP7.37□□□□□ -1.23
VPS52-213ENST00000461743 FAM168BA1KXE4 195 aa7.37□□□□□ -1.23
VPS52-213ENST00000461743 Q6Q795 121 aa7.37□□□□□ -1.23
VPS52-213ENST00000461743 ZNF625Q96I27 306 aaPredicted RBP7.37□□□□□ -1.23
VPS52-213ENST00000461743 LINC01600Q96MT4 127 aa7.37□□□□□ -1.23
VPS52-213ENST00000461743 PLA2G2DQ9UNK4 145 aa7.37□□□□□ -1.23
VPS52-213ENST00000461743 LOC107984156A0A0G2JMH3 177 aa7.36□□□□□ -1.23
VPS52-213ENST00000461743 KRTAP29-1A8MX34 341 aaPredicted RBP7.36□□□□□ -1.23
VPS52-213ENST00000461743 OXTP01178 125 aa7.36□□□□□ -1.23
VPS52-213ENST00000461743 SCGB1D4Q6XE38 83 aa7.36□□□□□ -1.23
VPS52-213ENST00000461743 PHF5AQ7RTV0 110 aaKnown RBP7.36□□□□□ -1.23
VPS52-213ENST00000461743 ARL17AQ8IVW1 177 aa7.36□□□□□ -1.23
VPS52-213ENST00000461743 TCL1BO95988 128 aa7.35□□□□□ -1.23
VPS52-213ENST00000461743 HERV-K104P63124 156 aa7.35□□□□□ -1.23
VPS52-213ENST00000461743 SRSF9Q13242 221 aaKnown RBP eCLIP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms