RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 IGKV2D-28P01615 120 aa11.36□□□□□ -0.59
USP39-209ENST00000458268 PLA2G2DQ9UNK4 145 aa11.36□□□□□ -0.59
USP39-209ENST00000458268 DPM2O94777 84 aa11.35□□□□□ -0.59
USP39-209ENST00000458268 SMIM13P0DJ93 91 aa11.35□□□□□ -0.59
USP39-209ENST00000458268 COX17Q14061 63 aa11.35□□□□□ -0.59
USP39-209ENST00000458268 MAP1LC3CQ9BXW4 147 aa11.35□□□□□ -0.59
USP39-209ENST00000458268 PLNP26678 52 aa11.34□□□□□ -0.59
USP39-209ENST00000458268 NDUFA12Q9UI09 145 aa11.34□□□□□ -0.59
USP39-209ENST00000458268 IGKCP01834 107 aa11.33□□□□□ -0.6
USP39-209ENST00000458268 IGLV5-37A0A075B6J1 123 aa11.32□□□□□ -0.6
USP39-209ENST00000458268 HERVK_113P61574 105 aa11.32□□□□□ -0.6
USP39-209ENST00000458268 RPL24P83731 157 aaKnown RBP11.32□□□□□ -0.6
USP39-209ENST00000458268 MYMXA0A1B0GTQ4 84 aa11.31□□□□□ -0.6
USP39-209ENST00000458268 VPREB1P12018 145 aa11.31□□□□□ -0.6
USP39-209ENST00000458268 TSPEAR-AS2P59090 65 aa11.31□□□□□ -0.6
USP39-209ENST00000458268 PRR26Q8N8Z3 221 aa11.31□□□□□ -0.6
USP39-209ENST00000458268 LEPROTO15243 131 aa11.3□□□□□ -0.6
USP39-209ENST00000458268 ZNF861PO60384 105 aa11.3□□□□□ -0.6
USP39-209ENST00000458268 BCE1O60756 84 aa11.3□□□□□ -0.6
USP39-209ENST00000458268 PLEKHB2Q96CS7 222 aa11.3□□□□□ -0.6
USP39-209ENST00000458268 LGALS3P17931 250 aaKnown RBP11.29□□□□□ -0.6
USP39-209ENST00000458268 UBE2AP49459 152 aa11.29□□□□□ -0.6
USP39-209ENST00000458268 HERV-K104P63124 156 aa11.29□□□□□ -0.6
USP39-209ENST00000458268 MIR7-3HGQ8N6C7 128 aa11.29□□□□□ -0.6
USP39-209ENST00000458268 Q8NDZ9 215 aa11.29□□□□□ -0.6
USP39-209ENST00000458268 RPL28P46779 137 aaKnown RBP11.28□□□□□ -0.6
USP39-209ENST00000458268 KRTAP10-8P60410 259 aa11.28□□□□□ -0.6
USP39-209ENST00000458268 J3QQQ9 107 aa11.27□□□□□ -0.61
USP39-209ENST00000458268 BOD1L2Q8IYS8 172 aa11.27□□□□□ -0.61
USP39-209ENST00000458268 TMEM238C9JI98 176 aa11.26□□□□□ -0.61
USP39-209ENST00000458268 SYS1-DBNDD2H3BUS1 97 aa11.26□□□□□ -0.61
USP39-209ENST00000458268 NCR3O14931 201 aa11.26□□□□□ -0.61
USP39-209ENST00000458268 DAND5Q8N907 189 aa11.26□□□□□ -0.61
USP39-209ENST00000458268 PRLHP81277 87 aa11.24□□□□□ -0.61
USP39-209ENST00000458268 FAM19A1Q7Z5A9 133 aa11.24□□□□□ -0.61
USP39-209ENST00000458268 IGLV1-50A0A075B6I6 118 aa11.23□□□□□ -0.61
USP39-209ENST00000458268 LINC00587B1AMM8 73 aa11.23□□□□□ -0.61
USP39-209ENST00000458268 TNXBP22105 4242 aa11.22□□□□□ -0.61
USP39-209ENST00000458268 KRTAP1-4P0C5Y4 121 aa11.22□□□□□ -0.61
USP39-209ENST00000458268 KRTDAPP60985 99 aa11.22□□□□□ -0.61
USP39-209ENST00000458268 TMEM126AQ9H061 195 aa11.22□□□□□ -0.61
USP39-209ENST00000458268 M0R378 163 aa11.2□□□□□ -0.62
USP39-209ENST00000458268 NMUP48645 174 aa11.2□□□□□ -0.62
USP39-209ENST00000458268 NPC2P61916 151 aa11.2□□□□□ -0.62
USP39-209ENST00000458268 C3orf79P0CE67 100 aa11.19□□□□□ -0.62
USP39-209ENST00000458268 PET117Q6UWS5 81 aa11.19□□□□□ -0.62
USP39-209ENST00000458268 MIEN1Q9BRT3 115 aa11.18□□□□□ -0.62
USP39-209ENST00000458268 E9PLD3 99 aa11.17□□□□□ -0.62
USP39-209ENST00000458268 LINC01545Q5VT33 79 aa11.17□□□□□ -0.62
USP39-209ENST00000458268 ANAPC11Q9NYG5 84 aa11.17□□□□□ -0.62
USP39-209ENST00000458268 S100A1P23297 94 aa11.16□□□□□ -0.62
USP39-209ENST00000458268 RPL13AP40429 203 aaKnown RBP11.15□□□□□ -0.62
USP39-209ENST00000458268 COA6Q5JTJ3 125 aaKnown RBP11.15□□□□□ -0.62
USP39-209ENST00000458268 HIGD2AQ9BW72 106 aa11.15□□□□□ -0.62
USP39-209ENST00000458268 A0A0J9YXY3 114 aa11.14□□□□□ -0.63
USP39-209ENST00000458268 KRTAP13-1Q8IUC0 172 aa11.14□□□□□ -0.63
USP39-209ENST00000458268 TRBV10-3A0A0K0K1G6 114 aa11.13□□□□□ -0.63
USP39-209ENST00000458268 C20orf202A1L168 122 aa11.13□□□□□ -0.63
USP39-209ENST00000458268 HMCN2Q8NDA2 5059 aa11.13□□□□□ -0.63
USP39-209ENST00000458268 ATOH7Q8N100 152 aa11.12□□□□□ -0.63
USP39-209ENST00000458268 A0A087X002 238 aa11.11□□□□□ -0.63
USP39-209ENST00000458268 PRYO14603 147 aa11.11□□□□□ -0.63
USP39-209ENST00000458268 TTTY13Q9BZ97 58 aa11.11□□□□□ -0.63
USP39-209ENST00000458268 IGKV2D-26A0A0A0MRZ7 120 aa11.1□□□□□ -0.63
USP39-209ENST00000458268 ETDCA0A1B0GVM5 59 aa11.1□□□□□ -0.63
USP39-209ENST00000458268 ZNF815PA8K554 130 aa11.1□□□□□ -0.63
USP39-209ENST00000458268 CRYGAP11844 174 aa11.1□□□□□ -0.63
USP39-209ENST00000458268 S100A12P80511 92 aa11.1□□□□□ -0.63
USP39-209ENST00000458268 ADAMTSL4-AS1Q5T5F5 129 aa11.1□□□□□ -0.63
USP39-209ENST00000458268 TYMSOSQ8TAI1 123 aa11.09□□□□□ -0.63
USP39-209ENST00000458268 DDTP30046 118 aa11.08□□□□□ -0.64
USP39-209ENST00000458268 S100A7L2Q5SY68 101 aa11.08□□□□□ -0.64
USP39-209ENST00000458268 TSPAN13O95857 204 aa11.07□□□□□ -0.64
USP39-209ENST00000458268 S100A2P29034 98 aa11.07□□□□□ -0.64
USP39-209ENST00000458268 SOSTDC1Q6X4U4 206 aa11.07□□□□□ -0.64
USP39-209ENST00000458268 SPANXB1Q9NS25 103 aaPredicted RBP11.07□□□□□ -0.64
USP39-209ENST00000458268 EIF4EBP3O60516 100 aaPredicted RBP11.05□□□□□ -0.64
USP39-209ENST00000458268 LOC107984156A0A0G2JMH3 177 aa11.04□□□□□ -0.64
USP39-209ENST00000458268 S100A6P06703 90 aa11.04□□□□□ -0.64
USP39-209ENST00000458268 ANKRD39Q53RE8 183 aa11.04□□□□□ -0.64
USP39-209ENST00000458268 SCGB1D4Q6XE38 83 aa11.04□□□□□ -0.64
USP39-209ENST00000458268 ARL17AQ8IVW1 177 aa11.04□□□□□ -0.64
USP39-209ENST00000458268 KCNQ1DNQ9H478 68 aa11.04□□□□□ -0.64
USP39-209ENST00000458268 TRBV10-2A0A0K0K1G8 114 aa11.03□□□□□ -0.64
USP39-209ENST00000458268 KRTAP13-2Q52LG2 175 aa11.02□□□□□ -0.65
USP39-209ENST00000458268 HIST3H2BBQ8N257 126 aa11.02□□□□□ -0.65
USP39-209ENST00000458268 LINC00337Q8N6G1 96 aa11.02□□□□□ -0.65
USP39-209ENST00000458268 LINC00308Q8TCZ7 52 aa11.02□□□□□ -0.65
USP39-209ENST00000458268 NDUFC2O95298 119 aa11.01□□□□□ -0.65
USP39-209ENST00000458268 OR13C6PQ8NH95 151 aa11.01□□□□□ -0.65
USP39-209ENST00000458268 LITAFQ99732 161 aa11.01□□□□□ -0.65
USP39-209ENST00000458268 PPDPFQ9H3Y8 114 aa11.01□□□□□ -0.65
USP39-209ENST00000458268 SPRR1AP35321 89 aa11□□□□□ -0.65
USP39-209ENST00000458268 FAM229BQ4G0N7 80 aa11□□□□□ -0.65
USP39-209ENST00000458268 SMCR5Q8TEV8 140 aa11□□□□□ -0.65
USP39-209ENST00000458268 TRAV23DV6A0A075B6W5 121 aa10.99□□□□□ -0.65
USP39-209ENST00000458268 TIMM17BO60830 172 aa10.99□□□□□ -0.65
USP39-209ENST00000458268 PRR4Q16378 134 aa10.99□□□□□ -0.65
USP39-209ENST00000458268 HIST1H2BLQ99880 126 aa10.99□□□□□ -0.65
USP39-209ENST00000458268 ZNF706Q9Y5V0 76 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms