RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 H0Y9J4 135 aa10.53□□□□□ -0.72
USP39-208ENST00000455732 IGKCP01834 107 aa10.53□□□□□ -0.72
USP39-208ENST00000455732 KRTAP10-8P60410 259 aa10.53□□□□□ -0.72
USP39-208ENST00000455732 COA6Q5JTJ3 125 aaKnown RBP10.53□□□□□ -0.72
USP39-208ENST00000455732 LINC00167Q96N53 147 aa10.53□□□□□ -0.72
USP39-208ENST00000455732 LEPROTO15243 131 aa10.52□□□□□ -0.73
USP39-208ENST00000455732 VPREB1P12018 145 aa10.52□□□□□ -0.73
USP39-208ENST00000455732 NDUFA12Q9UI09 145 aa10.52□□□□□ -0.73
USP39-208ENST00000455732 LINC00158P58513 81 aa10.51□□□□□ -0.73
USP39-208ENST00000455732 TSPEAR-AS2P59090 65 aa10.51□□□□□ -0.73
USP39-208ENST00000455732 HERVK_113P61574 105 aa10.51□□□□□ -0.73
USP39-208ENST00000455732 PLEKHB2Q96CS7 222 aa10.51□□□□□ -0.73
USP39-208ENST00000455732 PMCHL2Q9BQD1 86 aa10.51□□□□□ -0.73
USP39-208ENST00000455732 MYMXA0A1B0GTQ4 84 aa10.5□□□□□ -0.73
USP39-208ENST00000455732 LINC00587B1AMM8 73 aa10.5□□□□□ -0.73
USP39-208ENST00000455732 SYS1-DBNDD2H3BUS1 97 aa10.5□□□□□ -0.73
USP39-208ENST00000455732 RPL24P83731 157 aaKnown RBP10.5□□□□□ -0.73
USP39-208ENST00000455732 GAGE10A6NGK3 116 aa10.49□□□□□ -0.73
USP39-208ENST00000455732 ZNF861PO60384 105 aa10.49□□□□□ -0.73
USP39-208ENST00000455732 BCE1O60756 84 aa10.49□□□□□ -0.73
USP39-208ENST00000455732 S100A1P23297 94 aa10.49□□□□□ -0.73
USP39-208ENST00000455732 RPL37AP8A6NKH3 93 aa10.48□□□□□ -0.73
USP39-208ENST00000455732 J3QQQ9 107 aa10.48□□□□□ -0.73
USP39-208ENST00000455732 SMIM13P0DJ93 91 aa10.48□□□□□ -0.73
USP39-208ENST00000455732 MEIG1Q5JSS6 88 aa10.48□□□□□ -0.73
USP39-208ENST00000455732 Q8NDZ9 215 aa10.48□□□□□ -0.73
USP39-208ENST00000455732 NMUP48645 174 aa10.47□□□□□ -0.73
USP39-208ENST00000455732 A0A0U1RRA0 63 aa10.46□□□□□ -0.73
USP39-208ENST00000455732 LINC01545Q5VT33 79 aa10.46□□□□□ -0.73
USP39-208ENST00000455732 PET117Q6UWS5 81 aa10.46□□□□□ -0.73
USP39-208ENST00000455732 IGLV1-50A0A075B6I6 118 aa10.45□□□□□ -0.74
USP39-208ENST00000455732 ATP6V1G1O75348 118 aa10.45□□□□□ -0.74
USP39-208ENST00000455732 MIR7-3HGQ8N6C7 128 aa10.45□□□□□ -0.74
USP39-208ENST00000455732 IGKV2-28A0A075B6P5 120 aa10.44□□□□□ -0.74
USP39-208ENST00000455732 E9PLD3 99 aa10.44□□□□□ -0.74
USP39-208ENST00000455732 IGKV2D-28P01615 120 aa10.44□□□□□ -0.74
USP39-208ENST00000455732 KRTAP1-4P0C5Y4 121 aa10.44□□□□□ -0.74
USP39-208ENST00000455732 LGALS3P17931 250 aaKnown RBP10.44□□□□□ -0.74
USP39-208ENST00000455732 RPL28P46779 137 aaKnown RBP10.44□□□□□ -0.74
USP39-208ENST00000455732 KRTAP13-1Q8IUC0 172 aa10.43□□□□□ -0.74
USP39-208ENST00000455732 C3orf79P0CE67 100 aa10.42□□□□□ -0.74
USP39-208ENST00000455732 LOC107984156A0A0G2JMH3 177 aa10.41□□□□□ -0.74
USP39-208ENST00000455732 M0R378 163 aa10.41□□□□□ -0.74
USP39-208ENST00000455732 ARL17AQ8IVW1 177 aa10.41□□□□□ -0.74
USP39-208ENST00000455732 LRP2P98164 4655 aa10.4□□□□□ -0.74
USP39-208ENST00000455732 BOD1L2Q8IYS8 172 aa10.4□□□□□ -0.74
USP39-208ENST00000455732 TMEM126AQ9H061 195 aa10.4□□□□□ -0.74
USP39-208ENST00000455732 IGKV2D-26A0A0A0MRZ7 120 aa10.39□□□□□ -0.75
USP39-208ENST00000455732 TMEM238C9JI98 176 aa10.38□□□□□ -0.75
USP39-208ENST00000455732 UBE2AP49459 152 aa10.38□□□□□ -0.75
USP39-208ENST00000455732 PRR26Q8N8Z3 221 aa10.38□□□□□ -0.75
USP39-208ENST00000455732 KRTDAPP60985 99 aa10.37□□□□□ -0.75
USP39-208ENST00000455732 A0A0J9YXY3 114 aa10.36□□□□□ -0.75
USP39-208ENST00000455732 DAND5Q8N907 189 aa10.36□□□□□ -0.75
USP39-208ENST00000455732 RPL13AP40429 203 aaKnown RBP10.35□□□□□ -0.75
USP39-208ENST00000455732 C20orf202A1L168 122 aa10.34□□□□□ -0.75
USP39-208ENST00000455732 NCR3O14931 201 aa10.34□□□□□ -0.75
USP39-208ENST00000455732 FAM19A1Q7Z5A9 133 aa10.34□□□□□ -0.75
USP39-208ENST00000455732 TRBV10-2A0A0K0K1G8 114 aa10.33□□□□□ -0.76
USP39-208ENST00000455732 PRYO14603 147 aa10.33□□□□□ -0.76
USP39-208ENST00000455732 PRLHP81277 87 aa10.33□□□□□ -0.76
USP39-208ENST00000455732 MIEN1Q9BRT3 115 aa10.33□□□□□ -0.76
USP39-208ENST00000455732 AKR1D1P51857 326 aa10.32□□□□□ -0.76
USP39-208ENST00000455732 KCNQ1DNQ9H478 68 aa10.32□□□□□ -0.76
USP39-208ENST00000455732 TIMM17BO60830 172 aa10.31□□□□□ -0.76
USP39-208ENST00000455732 NDUFC2O95298 119 aa10.31□□□□□ -0.76
USP39-208ENST00000455732 SPRR1AP35321 89 aa10.31□□□□□ -0.76
USP39-208ENST00000455732 ADAMTSL4-AS1Q5T5F5 129 aa10.31□□□□□ -0.76
USP39-208ENST00000455732 HIST3H2BBQ8N257 126 aa10.31□□□□□ -0.76
USP39-208ENST00000455732 SPANXB1Q9NS25 103 aaPredicted RBP10.31□□□□□ -0.76
USP39-208ENST00000455732 LITAFQ99732 161 aa10.3□□□□□ -0.76
USP39-208ENST00000455732 TRBV10-3A0A0K0K1G6 114 aa10.29□□□□□ -0.76
USP39-208ENST00000455732 ZNF815PA8K554 130 aa10.29□□□□□ -0.76
USP39-208ENST00000455732 SOSTDC1Q6X4U4 206 aa10.29□□□□□ -0.76
USP39-208ENST00000455732 LINC00337Q8N6G1 96 aa10.29□□□□□ -0.76
USP39-208ENST00000455732 HIST1H2BLQ99880 126 aa10.28□□□□□ -0.76
USP39-208ENST00000455732 A0A087X002 238 aa10.27□□□□□ -0.77
USP39-208ENST00000455732 KRTAP4-16G5E9R7 235 aaPredicted RBP10.27□□□□□ -0.77
USP39-208ENST00000455732 EIF4EBP3O60516 100 aaPredicted RBP10.26□□□□□ -0.77
USP39-208ENST00000455732 CRYGAP11844 174 aa10.26□□□□□ -0.77
USP39-208ENST00000455732 S100A2P29034 98 aa10.26□□□□□ -0.77
USP39-208ENST00000455732 DDTP30046 118 aa10.26□□□□□ -0.77
USP39-208ENST00000455732 S100A12P80511 92 aa10.26□□□□□ -0.77
USP39-208ENST00000455732 FAM229BQ4G0N7 80 aa10.26□□□□□ -0.77
USP39-208ENST00000455732 TTTY13Q9BZ97 58 aa10.26□□□□□ -0.77
USP39-208ENST00000455732 ANKRD39Q53RE8 183 aa10.25□□□□□ -0.77
USP39-208ENST00000455732 RNF213Q63HN8 5207 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 IGLV6-57P01721 117 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 S100A6P06703 90 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 NPC2P61916 151 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 ATOH7Q8N100 152 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 LINC00308Q8TCZ7 52 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 HIGD2AQ9BW72 106 aa10.24□□□□□ -0.77
USP39-208ENST00000455732 ETDCA0A1B0GVM5 59 aa10.23□□□□□ -0.77
USP39-208ENST00000455732 SNRPEP62304 92 aaKnown RBP10.23□□□□□ -0.77
USP39-208ENST00000455732 SPANXCQ9NY87 97 aa10.23□□□□□ -0.77
USP39-208ENST00000455732 ANAPC11Q9NYG5 84 aa10.22□□□□□ -0.77
USP39-208ENST00000455732 S100A7L2Q5SY68 101 aa10.21□□□□□ -0.77
USP39-208ENST00000455732 KRTAP13-2Q52LG2 175 aa10.2□□□□□ -0.78
USP39-208ENST00000455732 SCGB1D4Q6XE38 83 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms