RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 LPAP08519 4548 aa9.72□□□□□ -0.85
NCKIPSD-208ENST00000454134 HSBP1O75506 76 aa9.71□□□□□ -0.86
NCKIPSD-208ENST00000454134 TSPAN13O95857 204 aa9.71□□□□□ -0.86
NCKIPSD-208ENST00000454134 CRYGAP11844 174 aa9.71□□□□□ -0.86
NCKIPSD-208ENST00000454134 PRLHP81277 87 aa9.71□□□□□ -0.86
NCKIPSD-208ENST00000454134 RNF213Q63HN8 5207 aa9.71□□□□□ -0.86
NCKIPSD-208ENST00000454134 TRGC2P03986 189 aa9.7□□□□□ -0.86
NCKIPSD-208ENST00000454134 PRR4Q16378 134 aa9.7□□□□□ -0.86
NCKIPSD-208ENST00000454134 TMEM126AQ9H061 195 aa9.7□□□□□ -0.86
NCKIPSD-208ENST00000454134 H0Y8G0 127 aa9.69□□□□□ -0.86
NCKIPSD-208ENST00000454134 FAM19A1Q7Z5A9 133 aa9.69□□□□□ -0.86
NCKIPSD-208ENST00000454134 TYMSOSQ8TAI1 123 aa9.69□□□□□ -0.86
NCKIPSD-208ENST00000454134 M0R378 163 aa9.68□□□□□ -0.86
NCKIPSD-208ENST00000454134 SMIM13P0DJ93 91 aa9.67□□□□□ -0.86
NCKIPSD-208ENST00000454134 KRTAP13-2Q52LG2 175 aa9.67□□□□□ -0.86
NCKIPSD-208ENST00000454134 LINC00310P59036 64 aa9.66□□□□□ -0.86
NCKIPSD-208ENST00000454134 SLC7A5P1Q8MH63 180 aa9.66□□□□□ -0.86
NCKIPSD-208ENST00000454134 SERF1AO75920 110 aa9.65□□□□□ -0.86
NCKIPSD-208ENST00000454134 MEIG1Q5JSS6 88 aa9.65□□□□□ -0.86
NCKIPSD-208ENST00000454134 ATP6V1G1O75348 118 aa9.64□□□□□ -0.87
NCKIPSD-208ENST00000454134 LEPROTL1O95214 131 aa9.63□□□□□ -0.87
NCKIPSD-208ENST00000454134 MIR7-3HGQ8N6C7 128 aa9.63□□□□□ -0.87
NCKIPSD-208ENST00000454134 NDUFA12Q9UI09 145 aa9.63□□□□□ -0.87
NCKIPSD-208ENST00000454134 HERV-K104P63124 156 aa9.62□□□□□ -0.87
NCKIPSD-208ENST00000454134 FAM229BQ4G0N7 80 aa9.62□□□□□ -0.87
NCKIPSD-208ENST00000454134 BOD1L2Q8IYS8 172 aa9.62□□□□□ -0.87
NCKIPSD-208ENST00000454134 NCR3O14931 201 aa9.61□□□□□ -0.87
NCKIPSD-208ENST00000454134 FABP4P15090 132 aa9.61□□□□□ -0.87
NCKIPSD-208ENST00000454134 TSPEAR-AS2P59090 65 aa9.61□□□□□ -0.87
NCKIPSD-208ENST00000454134 HIGD2AQ9BW72 106 aa9.61□□□□□ -0.87
NCKIPSD-208ENST00000454134 PLEKHB2Q96CS7 222 aa9.6□□□□□ -0.87
NCKIPSD-208ENST00000454134 PMCHL2Q9BQD1 86 aa9.6□□□□□ -0.87
NCKIPSD-208ENST00000454134 IGKV2D-26A0A0A0MRZ7 120 aa9.59□□□□□ -0.87
NCKIPSD-208ENST00000454134 MYMXA0A1B0GTQ4 84 aa9.59□□□□□ -0.87
NCKIPSD-208ENST00000454134 COLCA2A8K830 154 aa9.59□□□□□ -0.87
NCKIPSD-208ENST00000454134 HSPB8Q9UJY1 196 aa9.58□□□□□ -0.88
NCKIPSD-208ENST00000454134 LEPROTO15243 131 aa9.57□□□□□ -0.88
NCKIPSD-208ENST00000454134 PLNP26678 52 aa9.57□□□□□ -0.88
NCKIPSD-208ENST00000454134 DAND5Q8N907 189 aa9.57□□□□□ -0.88
NCKIPSD-208ENST00000454134 LINC00304Q8N9R0 145 aa9.57□□□□□ -0.88
NCKIPSD-208ENST00000454134 LINC00587B1AMM8 73 aa9.56□□□□□ -0.88
NCKIPSD-208ENST00000454134 DPM2O94777 84 aa9.56□□□□□ -0.88
NCKIPSD-208ENST00000454134 C3orf22Q8N5N4 141 aa9.56□□□□□ -0.88
NCKIPSD-208ENST00000454134 RETNLBQ9BQ08 111 aa9.56□□□□□ -0.88
NCKIPSD-208ENST00000454134 MAP1LC3CQ9BXW4 147 aa9.56□□□□□ -0.88
NCKIPSD-208ENST00000454134 PRYO14603 147 aa9.55□□□□□ -0.88
NCKIPSD-208ENST00000454134 TRBV10-3A0A0K0K1G6 114 aa9.54□□□□□ -0.88
NCKIPSD-208ENST00000454134 J3QQQ9 107 aa9.54□□□□□ -0.88
NCKIPSD-208ENST00000454134 SPRR4Q96PI1 79 aa9.54□□□□□ -0.88
NCKIPSD-208ENST00000454134 IGKCP01834 107 aa9.53□□□□□ -0.88
NCKIPSD-208ENST00000454134 SPRR1AP35321 89 aa9.53□□□□□ -0.88
NCKIPSD-208ENST00000454134 HERVK_113P61574 105 aa9.53□□□□□ -0.88
NCKIPSD-208ENST00000454134 KCNQ1DNQ9H478 68 aa9.53□□□□□ -0.88
NCKIPSD-208ENST00000454134 LINC00337Q8N6G1 96 aa9.52□□□□□ -0.89
NCKIPSD-208ENST00000454134 ETDCA0A1B0GVM5 59 aa9.51□□□□□ -0.89
NCKIPSD-208ENST00000454134 KRTAP4-16G5E9R7 235 aaPredicted RBP9.51□□□□□ -0.89
NCKIPSD-208ENST00000454134 LGALS3P17931 250 aaKnown RBP9.51□□□□□ -0.89
NCKIPSD-208ENST00000454134 SMCR5Q8TEV8 140 aa9.5□□□□□ -0.89
NCKIPSD-208ENST00000454134 PPDPFQ9H3Y8 114 aa9.49□□□□□ -0.89
NCKIPSD-208ENST00000454134 ZNF706Q9Y5V0 76 aaPredicted RBP9.49□□□□□ -0.89
NCKIPSD-208ENST00000454134 LOC107984156A0A0G2JMH3 177 aa9.48□□□□□ -0.89
NCKIPSD-208ENST00000454134 NMUP48645 174 aa9.48□□□□□ -0.89
NCKIPSD-208ENST00000454134 ARL17AQ8IVW1 177 aa9.48□□□□□ -0.89
NCKIPSD-208ENST00000454134 DDTP30046 118 aa9.47□□□□□ -0.89
NCKIPSD-208ENST00000454134 MIEN1Q9BRT3 115 aa9.47□□□□□ -0.89
NCKIPSD-208ENST00000454134 B5MCH6 92 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BKO60814 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BJP06899 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BOP23527 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BBP33778 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BDP58876 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 NPC2P61916 151 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BCP62807 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 S100A12P80511 92 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST2H2BEQ16778 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BHQ93079 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BNQ99877 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 HIST1H2BMQ99879 126 aa9.46□□□□□ -0.9
NCKIPSD-208ENST00000454134 TRBV10-2A0A0K0K1G8 114 aa9.45□□□□□ -0.9
NCKIPSD-208ENST00000454134 EIF4EBP3O60516 100 aaPredicted RBP9.45□□□□□ -0.9
NCKIPSD-208ENST00000454134 ADAMTSL4-AS1Q5T5F5 129 aa9.45□□□□□ -0.9
NCKIPSD-208ENST00000454134 SOSTDC1Q6X4U4 206 aa9.45□□□□□ -0.9
NCKIPSD-208ENST00000454134 SPANXB1Q9NS25 103 aaPredicted RBP9.45□□□□□ -0.9
NCKIPSD-208ENST00000454134 A0A0J9YXY3 114 aa9.44□□□□□ -0.9
NCKIPSD-208ENST00000454134 E9PLD3 99 aa9.44□□□□□ -0.9
NCKIPSD-208ENST00000454134 SYS1-DBNDD2H3BUS1 97 aa9.44□□□□□ -0.9
NCKIPSD-208ENST00000454134 ERC2-IT1O76042 136 aa9.44□□□□□ -0.9
NCKIPSD-208ENST00000454134 IGLV7-46A0A075B6I9 117 aa9.43□□□□□ -0.9
NCKIPSD-208ENST00000454134 Q8NBF4 154 aa9.43□□□□□ -0.9
NCKIPSD-208ENST00000454134 NDUFC2O95298 119 aa9.42□□□□□ -0.9
NCKIPSD-208ENST00000454134 CTAG1AP78358 180 aa9.42□□□□□ -0.9
NCKIPSD-208ENST00000454134 S100A7L2Q5SY68 101 aa9.42□□□□□ -0.9
NCKIPSD-208ENST00000454134 GAGE2AQ6NT46 116 aa9.42□□□□□ -0.9
NCKIPSD-208ENST00000454134 SPAG11AQ6PDA7 123 aa9.42□□□□□ -0.9
NCKIPSD-208ENST00000454134 Q9BRP9 147 aa9.42□□□□□ -0.9
NCKIPSD-208ENST00000454134 IGLV6-57P01721 117 aa9.41□□□□□ -0.9
NCKIPSD-208ENST00000454134 LINC00483Q53H64 154 aa9.41□□□□□ -0.9
NCKIPSD-208ENST00000454134 C4orf48Q5BLP8 95 aa9.4□□□□□ -0.9
NCKIPSD-208ENST00000454134 Q6ZRX8 168 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms