RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CIRBPQ14011 172 aaKnown RBP11.46□□□□□ -0.57
SQSTM1-204ENST00000453046 MEIG1Q5JSS6 88 aa11.46□□□□□ -0.57
SQSTM1-204ENST00000453046 SPANXB1Q9NS25 103 aaPredicted RBP11.46□□□□□ -0.57
SQSTM1-204ENST00000453046 OXTP01178 125 aa11.45□□□□□ -0.58
SQSTM1-204ENST00000453046 CHTF8P0CG12 524 aa11.45□□□□□ -0.58
SQSTM1-204ENST00000453046 LITAFQ99732 161 aa11.45□□□□□ -0.58
SQSTM1-204ENST00000453046 ERG28Q9UKR5 140 aa11.45□□□□□ -0.58
SQSTM1-204ENST00000453046 FAT3Q8TDW7 4589 aa11.44□□□□□ -0.58
SQSTM1-204ENST00000453046 HSD52Q0P140 79 aa11.44□□□□□ -0.58
SQSTM1-204ENST00000453046 SYCNQ0VAF6 134 aa11.44□□□□□ -0.58
SQSTM1-204ENST00000453046 UNQ6190/PRO20217Q6UXQ8 127 aa11.44□□□□□ -0.58
SQSTM1-204ENST00000453046 CARD19Q96LW7 228 aa11.44□□□□□ -0.58
SQSTM1-204ENST00000453046 A0A087WYN8 130 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 PCP4L1A6NKN8 68 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 COX17Q14061 63 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 TAL2Q16559 108 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 C10orf25Q5T742 122 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 Q6ZRU5 148 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 Q6ZVH6 145 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 SPACA4Q8TDM5 124 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 SPANXDQ9BXN6 97 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 SPANXCQ9NY87 97 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 C6orf48Q9UBA6 75 aa11.43□□□□□ -0.58
SQSTM1-204ENST00000453046 SMIM13P0DJ93 91 aa11.41□□□□□ -0.58
SQSTM1-204ENST00000453046 RNF151Q2KHN1 245 aa11.41□□□□□ -0.58
SQSTM1-204ENST00000453046 PKHD1L1Q86WI1 4243 aa11.4□□□□□ -0.58
SQSTM1-204ENST00000453046 IGKV2-24A0A0C4DH68 120 aa11.4□□□□□ -0.58
SQSTM1-204ENST00000453046 CTAG1AP78358 180 aa11.4□□□□□ -0.58
SQSTM1-204ENST00000453046 HIST1H4GQ99525 98 aa11.4□□□□□ -0.58
SQSTM1-204ENST00000453046 SRSF9Q13242 221 aaKnown RBP eCLIP11.39□□□□□ -0.59
SQSTM1-204ENST00000453046 PFN2P35080 140 aa11.38□□□□□ -0.59
SQSTM1-204ENST00000453046 LINC00158P58513 81 aa11.38□□□□□ -0.59
SQSTM1-204ENST00000453046 ADAMTSL4-AS1Q5T5F5 129 aa11.38□□□□□ -0.59
SQSTM1-204ENST00000453046 C7orf33Q8WU49 177 aa11.38□□□□□ -0.59
SQSTM1-204ENST00000453046 COPS9Q8WXC6 57 aa11.38□□□□□ -0.59
SQSTM1-204ENST00000453046 PPDPFQ9H3Y8 114 aa11.38□□□□□ -0.59
SQSTM1-204ENST00000453046 M0R143 59 aa11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 IFITM1P13164 125 aa11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 C9orf116Q5BN46 136 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 SERTAD4-AS1Q5TG53 156 aa11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 MIR7-3HGQ8N6C7 128 aa11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 PLAC8Q9NZF1 115 aa11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 PKIGQ9Y2B9 76 aa11.37□□□□□ -0.59
SQSTM1-204ENST00000453046 A0A0U1RRA0 63 aa11.36□□□□□ -0.59
SQSTM1-204ENST00000453046 TLX1NBP0CAT3 122 aa11.36□□□□□ -0.59
SQSTM1-204ENST00000453046 PTTG1IPP53801 180 aa11.36□□□□□ -0.59
SQSTM1-204ENST00000453046 NDUFC2-KCTD14E9PQ53 114 aa11.35□□□□□ -0.59
SQSTM1-204ENST00000453046 CEND1Q8N111 149 aa11.35□□□□□ -0.59
SQSTM1-204ENST00000453046 DAND5Q8N907 189 aa11.35□□□□□ -0.59
SQSTM1-204ENST00000453046 A0A096LNI7 61 aa11.33□□□□□ -0.6
SQSTM1-204ENST00000453046 BVES-AS1Q5T3Y7 98 aa11.33□□□□□ -0.6
SQSTM1-204ENST00000453046 LINC00308Q8TCZ7 52 aa11.33□□□□□ -0.6
SQSTM1-204ENST00000453046 LINC00474Q9P2X8 69 aa11.33□□□□□ -0.6
SQSTM1-204ENST00000453046 TMEM238LA0A1B0GVL6 79 aa11.32□□□□□ -0.6
SQSTM1-204ENST00000453046 A6NJY4 79 aa11.32□□□□□ -0.6
SQSTM1-204ENST00000453046 RPL24P83731 157 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-204ENST00000453046 LOC107984156A0A0G2JMH3 177 aa11.31□□□□□ -0.6
SQSTM1-204ENST00000453046 HINT1P49773 126 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-204ENST00000453046 MUSTN1Q8IVN3 82 aa11.31□□□□□ -0.6
SQSTM1-204ENST00000453046 ARL17AQ8IVW1 177 aa11.31□□□□□ -0.6
SQSTM1-204ENST00000453046 SND1-IT1Q9HBX3 110 aa11.31□□□□□ -0.6
SQSTM1-204ENST00000453046 LOC107984640A0A0U1RRK4 108 aa11.3□□□□□ -0.6
SQSTM1-204ENST00000453046 FXYD2P54710 66 aa11.3□□□□□ -0.6
SQSTM1-204ENST00000453046 SOSTDC1Q6X4U4 206 aa11.3□□□□□ -0.6
SQSTM1-204ENST00000453046 NPC2P61916 151 aa11.29□□□□□ -0.6
SQSTM1-204ENST00000453046 HMCN2Q8NDA2 5059 aa11.28□□□□□ -0.6
SQSTM1-204ENST00000453046 RPL18AQ02543 176 aaKnown RBP11.28□□□□□ -0.6
SQSTM1-204ENST00000453046 Q6ZRP5 223 aa11.28□□□□□ -0.6
SQSTM1-204ENST00000453046 A4D1N5 150 aa11.26□□□□□ -0.61
SQSTM1-204ENST00000453046 EIF4EBP3O60516 100 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-204ENST00000453046 GAGE2BQ13066 116 aa11.26□□□□□ -0.61
SQSTM1-204ENST00000453046 SNHG12Q9BXW3 62 aa11.26□□□□□ -0.61
SQSTM1-204ENST00000453046 A6NDN8 102 aa11.25□□□□□ -0.61
SQSTM1-204ENST00000453046 BATFQ16520 125 aa11.25□□□□□ -0.61
SQSTM1-204ENST00000453046 GAGE2EQ4V326 116 aa11.25□□□□□ -0.61
SQSTM1-204ENST00000453046 GAGE2DQ9UEU5 116 aa11.25□□□□□ -0.61
SQSTM1-204ENST00000453046 PLA2G2DQ9UNK4 145 aa11.25□□□□□ -0.61
SQSTM1-204ENST00000453046 NDUFC2O95298 119 aa11.24□□□□□ -0.61
SQSTM1-204ENST00000453046 PRR3P79522 188 aaKnown RBP11.24□□□□□ -0.61
SQSTM1-204ENST00000453046 XAGE1AQ9HD64 81 aa11.24□□□□□ -0.61
SQSTM1-204ENST00000453046 A0A0B4J2C4 111 aa11.23□□□□□ -0.61
SQSTM1-204ENST00000453046 A0A1B0GWB2 263 aa11.23□□□□□ -0.61
SQSTM1-204ENST00000453046 NHP2Q9NX24 153 aaKnown RBP11.22□□□□□ -0.61
SQSTM1-204ENST00000453046 MT1HL1P0DM35 61 aa11.21□□□□□ -0.61
SQSTM1-204ENST00000453046 C9orf129Q5T035 196 aaKnown RBP11.21□□□□□ -0.61
SQSTM1-204ENST00000453046 CFC1BP0CG36 223 aa11.19□□□□□ -0.62
SQSTM1-204ENST00000453046 CFC1P0CG37 223 aa11.19□□□□□ -0.62
SQSTM1-204ENST00000453046 RAB37Q96AX2 223 aa11.18□□□□□ -0.62
SQSTM1-204ENST00000453046 IGKV2-28A0A075B6P5 120 aa11.17□□□□□ -0.62
SQSTM1-204ENST00000453046 TRBV10-2A0A0K0K1G8 114 aa11.17□□□□□ -0.62
SQSTM1-204ENST00000453046 K7ERJ3 54 aa11.17□□□□□ -0.62
SQSTM1-204ENST00000453046 IGKV2D-28P01615 120 aa11.17□□□□□ -0.62
SQSTM1-204ENST00000453046 VPREB1P12018 145 aa11.17□□□□□ -0.62
SQSTM1-204ENST00000453046 COL5A1-AS1Q5SY13 56 aa11.17□□□□□ -0.62
SQSTM1-204ENST00000453046 TRAV13-2A0A0B4J235 113 aa11.16□□□□□ -0.62
SQSTM1-204ENST00000453046 LBHQ53QV2 105 aaPredicted RBP11.16□□□□□ -0.62
SQSTM1-204ENST00000453046 SPINK6Q6UWN8 80 aa11.16□□□□□ -0.62
SQSTM1-204ENST00000453046 Q8NDZ9 215 aa11.16□□□□□ -0.62
SQSTM1-204ENST00000453046 IGLV5-37A0A075B6J1 123 aa11.15□□□□□ -0.62
SQSTM1-204ENST00000453046 A0A1W2PNN7 141 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms