RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 TMEM223A0PJW6 202 aa9.08□□□□□ -0.96
CHD3-205ENST00000449744 CRYGAP11844 174 aa9.08□□□□□ -0.96
CHD3-205ENST00000449744 A0A0U1RRA0 63 aa9.06□□□□□ -0.96
CHD3-205ENST00000449744 FAM19A2Q8N3H0 131 aa9.06□□□□□ -0.96
CHD3-205ENST00000449744 A0A087X002 238 aa9.05□□□□□ -0.96
CHD3-205ENST00000449744 TRGC2P03986 189 aa9.05□□□□□ -0.96
CHD3-205ENST00000449744 S100A6P06703 90 aa9.05□□□□□ -0.96
CHD3-205ENST00000449744 FAM19A1Q7Z5A9 133 aa9.05□□□□□ -0.96
CHD3-205ENST00000449744 KRTAP13-1Q8IUC0 172 aa9.05□□□□□ -0.96
CHD3-205ENST00000449744 TYMSOSQ8TAI1 123 aa9.05□□□□□ -0.96
CHD3-205ENST00000449744 H0Y8G0 127 aa9.04□□□□□ -0.96
CHD3-205ENST00000449744 PRLHP81277 87 aa9.04□□□□□ -0.96
CHD3-205ENST00000449744 PRR4Q16378 134 aa9.04□□□□□ -0.96
CHD3-205ENST00000449744 MEIG1Q5JSS6 88 aa9.04□□□□□ -0.96
CHD3-205ENST00000449744 TMEM126AQ9H061 195 aa9.04□□□□□ -0.96
CHD3-205ENST00000449744 TMEM238C9JI98 176 aa9.03□□□□□ -0.96
CHD3-205ENST00000449744 TSPAN13O95857 204 aa9.03□□□□□ -0.96
CHD3-205ENST00000449744 ANAPC11Q9NYG5 84 aa9.03□□□□□ -0.96
CHD3-205ENST00000449744 LEPROTL1O95214 131 aa9.02□□□□□ -0.97
CHD3-205ENST00000449744 HERV-K104P63124 156 aa9.02□□□□□ -0.97
CHD3-205ENST00000449744 Q8NDZ9 215 aa9.02□□□□□ -0.97
CHD3-205ENST00000449744 LINC00587B1AMM8 73 aa9.01□□□□□ -0.97
CHD3-205ENST00000449744 M0R378 163 aa9.01□□□□□ -0.97
CHD3-205ENST00000449744 SMIM13P0DJ93 91 aa9.01□□□□□ -0.97
CHD3-205ENST00000449744 SERF1AO75920 110 aa9□□□□□ -0.97
CHD3-205ENST00000449744 FAM229BQ4G0N7 80 aa9□□□□□ -0.97
CHD3-205ENST00000449744 MYMXA0A1B0GTQ4 84 aa8.99□□□□□ -0.97
CHD3-205ENST00000449744 NDUFA12Q9UI09 145 aa8.99□□□□□ -0.97
CHD3-205ENST00000449744 BOD1L2Q8IYS8 172 aa8.98□□□□□ -0.97
CHD3-205ENST00000449744 MIR7-3HGQ8N6C7 128 aa8.98□□□□□ -0.97
CHD3-205ENST00000449744 MAP1LC3CQ9BXW4 147 aa8.98□□□□□ -0.97
CHD3-205ENST00000449744 HSPB8Q9UJY1 196 aa8.98□□□□□ -0.97
CHD3-205ENST00000449744 IGKV2D-26A0A0A0MRZ7 120 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BKO60814 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BJP06899 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BOP23527 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BBP33778 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BDP58876 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BCP62807 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST2H2BEQ16778 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BHQ93079 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BNQ99877 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIST1H2BMQ99879 126 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 HIGD2AQ9BW72 106 aa8.97□□□□□ -0.97
CHD3-205ENST00000449744 FABP4P15090 132 aa8.96□□□□□ -0.98
CHD3-205ENST00000449744 PLNP26678 52 aa8.96□□□□□ -0.98
CHD3-205ENST00000449744 LINC00310P59036 64 aa8.96□□□□□ -0.98
CHD3-205ENST00000449744 KRTAP13-2Q52LG2 175 aa8.96□□□□□ -0.98
CHD3-205ENST00000449744 PLEKHB2Q96CS7 222 aa8.96□□□□□ -0.98
CHD3-205ENST00000449744 NCR3O14931 201 aa8.95□□□□□ -0.98
CHD3-205ENST00000449744 LEPROTO15243 131 aa8.95□□□□□ -0.98
CHD3-205ENST00000449744 HERVK_113P61574 105 aa8.95□□□□□ -0.98
CHD3-205ENST00000449744 LPAP08519 4548 aa8.95□□□□□ -0.98
CHD3-205ENST00000449744 PRYO14603 147 aa8.94□□□□□ -0.98
CHD3-205ENST00000449744 DPM2O94777 84 aa8.94□□□□□ -0.98
CHD3-205ENST00000449744 LINC00304Q8N9R0 145 aa8.94□□□□□ -0.98
CHD3-205ENST00000449744 S100A2P29034 98 aa8.93□□□□□ -0.98
CHD3-205ENST00000449744 S100A12P80511 92 aa8.93□□□□□ -0.98
CHD3-205ENST00000449744 J3QQQ9 107 aa8.92□□□□□ -0.98
CHD3-205ENST00000449744 IGKCP01834 107 aa8.92□□□□□ -0.98
CHD3-205ENST00000449744 LGALS3P17931 250 aaKnown RBP8.92□□□□□ -0.98
CHD3-205ENST00000449744 TSPEAR-AS2P59090 65 aa8.92□□□□□ -0.98
CHD3-205ENST00000449744 SNRPEP62304 92 aaKnown RBP8.92□□□□□ -0.98
CHD3-205ENST00000449744 PMCHL2Q9BQD1 86 aa8.92□□□□□ -0.98
CHD3-205ENST00000449744 ZNF706Q9Y5V0 76 aaPredicted RBP8.91□□□□□ -0.98
CHD3-205ENST00000449744 ETDCA0A1B0GVM5 59 aa8.9□□□□□ -0.98
CHD3-205ENST00000449744 NMUP48645 174 aa8.9□□□□□ -0.98
CHD3-205ENST00000449744 LINC00337Q8N6G1 96 aa8.9□□□□□ -0.98
CHD3-205ENST00000449744 MIEN1Q9BRT3 115 aa8.9□□□□□ -0.98
CHD3-205ENST00000449744 TRBV10-3A0A0K0K1G6 114 aa8.89□□□□□ -0.99
CHD3-205ENST00000449744 C5orf52A6NGY3 159 aa8.89□□□□□ -0.99
CHD3-205ENST00000449744 DAND5Q8N907 189 aa8.89□□□□□ -0.99
CHD3-205ENST00000449744 SPRR4Q96PI1 79 aa8.89□□□□□ -0.99
CHD3-205ENST00000449744 KCNQ1DNQ9H478 68 aa8.89□□□□□ -0.99
CHD3-205ENST00000449744 SPRR1AP35321 89 aa8.88□□□□□ -0.99
CHD3-205ENST00000449744 COA6Q5JTJ3 125 aaKnown RBP8.88□□□□□ -0.99
CHD3-205ENST00000449744 C3orf22Q8N5N4 141 aa8.88□□□□□ -0.99
CHD3-205ENST00000449744 AKR1D1P51857 326 aa8.87□□□□□ -0.99
CHD3-205ENST00000449744 SMCR5Q8TEV8 140 aa8.87□□□□□ -0.99
CHD3-205ENST00000449744 LOC107984156A0A0G2JMH3 177 aa8.86□□□□□ -0.99
CHD3-205ENST00000449744 DDTP30046 118 aa8.86□□□□□ -0.99
CHD3-205ENST00000449744 CTAG1AP78358 180 aa8.86□□□□□ -0.99
CHD3-205ENST00000449744 ARL17AQ8IVW1 177 aa8.86□□□□□ -0.99
CHD3-205ENST00000449744 RETNLBQ9BQ08 111 aa8.86□□□□□ -0.99
CHD3-205ENST00000449744 TRBV10-2A0A0K0K1G8 114 aa8.85□□□□□ -0.99
CHD3-205ENST00000449744 LOC105371267A0A1B0GV96 52 aa8.85□□□□□ -0.99
CHD3-205ENST00000449744 HIST3H2BBQ8N257 126 aa8.85□□□□□ -0.99
CHD3-205ENST00000449744 KRTAP4-16G5E9R7 235 aaPredicted RBP8.84□□□□□ -0.99
CHD3-205ENST00000449744 SPAG11AQ6PDA7 123 aa8.84□□□□□ -0.99
CHD3-205ENST00000449744 SPANXB1Q9NS25 103 aaPredicted RBP8.84□□□□□ -0.99
CHD3-205ENST00000449744 E9PLD3 99 aa8.83□□□□□ -1
CHD3-205ENST00000449744 C4orf48Q5BLP8 95 aa8.83□□□□□ -1
CHD3-205ENST00000449744 S100A7L2Q5SY68 101 aa8.83□□□□□ -1
CHD3-205ENST00000449744 PPDPFQ9H3Y8 114 aa8.83□□□□□ -1
CHD3-205ENST00000449744 SYS1-DBNDD2H3BUS1 97 aa8.82□□□□□ -1
CHD3-205ENST00000449744 NDUFC2O95298 119 aa8.82□□□□□ -1
CHD3-205ENST00000449744 A0A0J9YXY3 114 aa8.81□□□□□ -1
CHD3-205ENST00000449744 B5MCH6 92 aa8.81□□□□□ -1
CHD3-205ENST00000449744 NPC2P61916 151 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms