RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 ZNF706Q9Y5V0 76 aaPredicted RBP7.97□□□□□ -1.13
HMGN1-208ENST00000443046 IGLV5-39A0A0G2JS06 123 aa7.96□□□□□ -1.14
HMGN1-208ENST00000443046 A0A1B0GVG6 124 aa7.96□□□□□ -1.14
HMGN1-208ENST00000443046 RPS29P62273 56 aaKnown RBP7.96□□□□□ -1.14
HMGN1-208ENST00000443046 COX17Q14061 63 aa7.96□□□□□ -1.14
HMGN1-208ENST00000443046 Q8N377 158 aa7.96□□□□□ -1.14
HMGN1-208ENST00000443046 MRPL18Q9H0U6 180 aaKnown RBP7.96□□□□□ -1.14
HMGN1-208ENST00000443046 RAB14P61106 215 aa7.95□□□□□ -1.14
HMGN1-208ENST00000443046 ERG28Q9UKR5 140 aa7.95□□□□□ -1.14
HMGN1-208ENST00000443046 NDUFA12Q9UI09 145 aa7.94□□□□□ -1.14
HMGN1-208ENST00000443046 FLGP20930 4061 aaPredicted RBP7.93□□□□□ -1.14
HMGN1-208ENST00000443046 KRTAP10-6P60371 365 aaPredicted RBP7.93□□□□□ -1.14
HMGN1-208ENST00000443046 LINC00483Q53H64 154 aa7.93□□□□□ -1.14
HMGN1-208ENST00000443046 FAM19A2Q8N3H0 131 aa7.93□□□□□ -1.14
HMGN1-208ENST00000443046 LINC01546A6NGU7 62 aa7.92□□□□□ -1.14
HMGN1-208ENST00000443046 H3BRM9 83 aa7.92□□□□□ -1.14
HMGN1-208ENST00000443046 PMVKQ15126 192 aa7.92□□□□□ -1.14
HMGN1-208ENST00000443046 LINC01549A6NIU2 74 aa7.91□□□□□ -1.14
HMGN1-208ENST00000443046 SPRR1AP35321 89 aa7.9□□□□□ -1.14
HMGN1-208ENST00000443046 SMCR5Q8TEV8 140 aa7.9□□□□□ -1.14
HMGN1-208ENST00000443046 KRTAP4-16G5E9R7 235 aaPredicted RBP7.89□□□□□ -1.15
HMGN1-208ENST00000443046 SLC25A20O43772 301 aa7.89□□□□□ -1.15
HMGN1-208ENST00000443046 IGLC3P0DOY3 106 aa7.89□□□□□ -1.15
HMGN1-208ENST00000443046 ANAPC16Q96DE5 110 aa7.89□□□□□ -1.15
HMGN1-208ENST00000443046 KIAA1644Q3SXP7 199 aa7.88□□□□□ -1.15
HMGN1-208ENST00000443046 SSBP3-AS1Q7Z2R9 100 aa7.88□□□□□ -1.15
HMGN1-208ENST00000443046 ZNF625Q96I27 306 aaPredicted RBP7.88□□□□□ -1.15
HMGN1-208ENST00000443046 PRYO14603 147 aa7.87□□□□□ -1.15
HMGN1-208ENST00000443046 MT-ND4LP03901 98 aa7.87□□□□□ -1.15
HMGN1-208ENST00000443046 KCNQ1DNQ9H478 68 aa7.87□□□□□ -1.15
HMGN1-208ENST00000443046 ZNF22P17026 224 aaPredicted RBP7.86□□□□□ -1.15
HMGN1-208ENST00000443046 MOBPQ13875 183 aa7.85□□□□□ -1.15
HMGN1-208ENST00000443046 SFTA2Q6UW10 78 aa7.85□□□□□ -1.15
HMGN1-208ENST00000443046 PCOTHQ58A44 107 aa7.84□□□□□ -1.15
HMGN1-208ENST00000443046 IGLV9-49A0A0B4J1Y8 123 aa7.83□□□□□ -1.16
HMGN1-208ENST00000443046 GAGE2AQ6NT46 116 aa7.83□□□□□ -1.16
HMGN1-208ENST00000443046 IGLV8-61A0A075B6I0 122 aa7.82□□□□□ -1.16
HMGN1-208ENST00000443046 KRTAP9-7A8MTY7 169 aa7.82□□□□□ -1.16
HMGN1-208ENST00000443046 ERC2-IT1O76042 136 aa7.82□□□□□ -1.16
HMGN1-208ENST00000443046 SSPOA2VEC9 5147 aa7.81□□□□□ -1.16
HMGN1-208ENST00000443046 hCG_2014768A0A024R1R8 64 aa7.81□□□□□ -1.16
HMGN1-208ENST00000443046 LINC00158P58513 81 aa7.81□□□□□ -1.16
HMGN1-208ENST00000443046 ETDCA0A1B0GVM5 59 aa7.8□□□□□ -1.16
HMGN1-208ENST00000443046 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.8□□□□□ -1.16
HMGN1-208ENST00000443046 A0A096LNJ9 63 aa7.79□□□□□ -1.16
HMGN1-208ENST00000443046 B5MCH6 92 aa7.79□□□□□ -1.16
HMGN1-208ENST00000443046 C11orf86A6NJI1 115 aa7.78□□□□□ -1.16
HMGN1-208ENST00000443046 TRBV10-3A0A0K0K1G6 114 aa7.77□□□□□ -1.17
HMGN1-208ENST00000443046 A0A0U1RRA0 63 aa7.77□□□□□ -1.17
HMGN1-208ENST00000443046 NCR3O14931 201 aa7.77□□□□□ -1.17
HMGN1-208ENST00000443046 BOD1L2Q8IYS8 172 aa7.77□□□□□ -1.17
HMGN1-208ENST00000443046 Q9BRP9 147 aa7.77□□□□□ -1.17
HMGN1-208ENST00000443046 USH2AO75445 5202 aa7.77□□□□□ -1.17
HMGN1-208ENST00000443046 NDUFA6P56556 154 aa7.76□□□□□ -1.17
HMGN1-208ENST00000443046 FA2HQ7L5A8 372 aa7.76□□□□□ -1.17
HMGN1-208ENST00000443046 TRAV9-1A0A075B6T8 112 aa7.75□□□□□ -1.17
HMGN1-208ENST00000443046 SMIM13P0DJ93 91 aa7.75□□□□□ -1.17
HMGN1-208ENST00000443046 M0R2T5 61 aa7.74□□□□□ -1.17
HMGN1-208ENST00000443046 TMEM170BQ5T4T1 132 aa7.74□□□□□ -1.17
HMGN1-208ENST00000443046 SMCO4Q9NRQ5 59 aa7.74□□□□□ -1.17
HMGN1-208ENST00000443046 MIR7-3HGQ8N6C7 128 aa7.73□□□□□ -1.17
HMGN1-208ENST00000443046 Q6ZRX8 168 aa7.72□□□□□ -1.17
HMGN1-208ENST00000443046 URB1-AS1Q96HZ7 61 aa7.72□□□□□ -1.17
HMGN1-208ENST00000443046 TMEM223A0PJW6 202 aa7.71□□□□□ -1.18
HMGN1-208ENST00000443046 C9orf92A6NGG3 77 aa7.71□□□□□ -1.18
HMGN1-208ENST00000443046 BAGE3Q86Y29 109 aa7.71□□□□□ -1.18
HMGN1-208ENST00000443046 ATP6V1G1O75348 118 aa7.7□□□□□ -1.18
HMGN1-208ENST00000443046 C9orf153Q5TBE3 101 aa7.7□□□□□ -1.18
HMGN1-208ENST00000443046 LOC107984156A0A0G2JMH3 177 aa7.69□□□□□ -1.18
HMGN1-208ENST00000443046 HBDP02042 147 aa7.69□□□□□ -1.18
HMGN1-208ENST00000443046 S100A12P80511 92 aa7.69□□□□□ -1.18
HMGN1-208ENST00000443046 ARL17AQ8IVW1 177 aa7.69□□□□□ -1.18
HMGN1-208ENST00000443046 TRBV10-2A0A0K0K1G8 114 aa7.67□□□□□ -1.18
HMGN1-208ENST00000443046 LINC00614P0C842 121 aa7.67□□□□□ -1.18
HMGN1-208ENST00000443046 DDTP30046 118 aa7.67□□□□□ -1.18
HMGN1-208ENST00000443046 HERV-K104P63124 156 aa7.67□□□□□ -1.18
HMGN1-208ENST00000443046 COX19Q49B96 90 aa7.67□□□□□ -1.18
HMGN1-208ENST00000443046 MEIG1Q5JSS6 88 aa7.67□□□□□ -1.18
HMGN1-208ENST00000443046 CHTOPQ9Y3Y2 248 aaKnown RBP7.67□□□□□ -1.18
HMGN1-208ENST00000443046 FABP9Q0Z7S8 132 aa7.66□□□□□ -1.18
HMGN1-208ENST00000443046 PMCHL1Q16048 86 aa7.66□□□□□ -1.18
HMGN1-208ENST00000443046 LIMD2Q9BT23 127 aa7.66□□□□□ -1.18
HMGN1-208ENST00000443046 FCGBPQ9Y6R7 5405 aaPredicted RBP7.66□□□□□ -1.18
HMGN1-208ENST00000443046 C5orf52A6NGY3 159 aa7.65□□□□□ -1.18
HMGN1-208ENST00000443046 LINC00587B1AMM8 73 aa7.65□□□□□ -1.18
HMGN1-208ENST00000443046 IGLV6-57P01721 117 aa7.65□□□□□ -1.18
HMGN1-208ENST00000443046 ST20-AS1Q8NBB2 130 aa7.65□□□□□ -1.18
HMGN1-208ENST00000443046 C18orf32Q8TCD1 76 aa7.65□□□□□ -1.18
HMGN1-208ENST00000443046 JOSD1Q15040 202 aaPredicted RBP7.64□□□□□ -1.19
HMGN1-208ENST00000443046 COX6B2Q6YFQ2 88 aa7.64□□□□□ -1.19
HMGN1-208ENST00000443046 TRAV12-1A0A0B4J245 112 aa7.62□□□□□ -1.19
HMGN1-208ENST00000443046 SPRR1BP22528 89 aa7.62□□□□□ -1.19
HMGN1-208ENST00000443046 S100PP25815 95 aa7.62□□□□□ -1.19
HMGN1-208ENST00000443046 MAP1LC3CQ9BXW4 147 aa7.62□□□□□ -1.19
HMGN1-208ENST00000443046 RPL37P61927 97 aaKnown RBP7.61□□□□□ -1.19
HMGN1-208ENST00000443046 HRCT1Q6UXD1 115 aa7.61□□□□□ -1.19
HMGN1-208ENST00000443046 SEC11CQ9BY50 192 aa7.61□□□□□ -1.19
HMGN1-208ENST00000443046 SPANXB1Q9NS25 103 aaPredicted RBP7.61□□□□□ -1.19
HMGN1-208ENST00000443046 MYMXA0A1B0GTQ4 84 aa7.6□□□□□ -1.19
HMGN1-208ENST00000443046 TRAV23DV6A0A075B6W5 121 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms