RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 C9orf153Q5TBE3 101 aa11.15□□□□□ -0.62
CLCNKA-203ENST00000439316 Q8NDZ9 215 aa11.15□□□□□ -0.62
CLCNKA-203ENST00000439316 JMJD7-PLA2G4BH0Y9G9 81 aa11.14□□□□□ -0.63
CLCNKA-203ENST00000439316 ATOX1O00244 68 aa11.14□□□□□ -0.63
CLCNKA-203ENST00000439316 KRTAP10-11P60412 298 aa11.14□□□□□ -0.63
CLCNKA-203ENST00000439316 DAD1P61803 113 aa11.14□□□□□ -0.63
CLCNKA-203ENST00000439316 IGKV3D-7A0A0C4DH55 119 aa11.14□□□□□ -0.63
CLCNKA-203ENST00000439316 C2orf48Q96LS8 159 aa11.14□□□□□ -0.63
CLCNKA-203ENST00000439316 TMEM256-PLSCR3K7ERE1 68 aa11.13□□□□□ -0.63
CLCNKA-203ENST00000439316 COX7CP15954 63 aa11.13□□□□□ -0.63
CLCNKA-203ENST00000439316 APOC4P55056 127 aa11.13□□□□□ -0.63
CLCNKA-203ENST00000439316 CELA1Q9UNI1 258 aa11.12□□□□□ -0.63
CLCNKA-203ENST00000439316 IGHV4-30-4P0DP06 118 aa11.12□□□□□ -0.63
CLCNKA-203ENST00000439316 Q8NAQ8 132 aa11.12□□□□□ -0.63
CLCNKA-203ENST00000439316 MUC7Q8TAX7 377 aa11.12□□□□□ -0.63
CLCNKA-203ENST00000439316 MGAM2Q2M2H8 2515 aa11.12□□□□□ -0.63
CLCNKA-203ENST00000439316 RPL18AQ02543 176 aaKnown RBP11.11□□□□□ -0.63
CLCNKA-203ENST00000439316 EGFEM1PQ0D2K5 195 aa11.11□□□□□ -0.63
CLCNKA-203ENST00000439316 C6orf99Q4VX62 202 aa11.11□□□□□ -0.63
CLCNKA-203ENST00000439316 SMIM20Q8N5G0 67 aa11.11□□□□□ -0.63
CLCNKA-203ENST00000439316 DNAH3Q8TD57 4116 aa11.11□□□□□ -0.63
CLCNKA-203ENST00000439316 SPAG11BQ08648 103 aa11.1□□□□□ -0.63
CLCNKA-203ENST00000439316 C10orf25Q5T742 122 aa11.1□□□□□ -0.63
CLCNKA-203ENST00000439316 LELP1Q5T871 98 aa11.1□□□□□ -0.63
CLCNKA-203ENST00000439316 MDFIQ99750 246 aa11.1□□□□□ -0.63
CLCNKA-203ENST00000439316 MIFP14174 115 aa11.09□□□□□ -0.63
CLCNKA-203ENST00000439316 A0A0J9YWU9 116 aa11.08□□□□□ -0.64
CLCNKA-203ENST00000439316 UNQ6190/PRO20217Q6UXQ8 127 aa11.08□□□□□ -0.64
CLCNKA-203ENST00000439316 LINC00575Q6W349 94 aa11.08□□□□□ -0.64
CLCNKA-203ENST00000439316 C6orf223Q8N319 242 aa11.08□□□□□ -0.64
CLCNKA-203ENST00000439316 S100A7L2Q5SY68 101 aa11.08□□□□□ -0.64
CLCNKA-203ENST00000439316 PRR34Q9NV39 138 aa11.08□□□□□ -0.64
CLCNKA-203ENST00000439316 CRYGAP11844 174 aa11.07□□□□□ -0.64
CLCNKA-203ENST00000439316 A0A087WVE0 104 aa11.06□□□□□ -0.64
CLCNKA-203ENST00000439316 SPART-AS1P0CW21 52 aa11.05□□□□□ -0.64
CLCNKA-203ENST00000439316 ATP5EP2Q5VTU8 51 aa11.05□□□□□ -0.64
CLCNKA-203ENST00000439316 IGLV6-57P01721 117 aa11.05□□□□□ -0.64
CLCNKA-203ENST00000439316 GVQW2A0A096LPI5 108 aaPredicted RBP11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 HTN3P15516 51 aa11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 LYPD5Q6UWN5 251 aa11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 KLK12Q9UKR0 248 aa11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 hADV29S1A0JD25 119 aa11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 USP17L23D6RBM5 183 aa11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 ENHOQ6UWT2 76 aa11.03□□□□□ -0.64
CLCNKA-203ENST00000439316 ZNF561-AS1K7EIQ3 104 aa11.02□□□□□ -0.65
CLCNKA-203ENST00000439316 SERP2Q8N6R1 65 aa11.02□□□□□ -0.65
CLCNKA-203ENST00000439316 Q6ZQT0 140 aa11□□□□□ -0.65
CLCNKA-203ENST00000439316 LOC110117498A0A087WWA1 95 aa10.99□□□□□ -0.65
CLCNKA-203ENST00000439316 C6orf48Q9UBA6 75 aa10.99□□□□□ -0.65
CLCNKA-203ENST00000439316 TENM3Q9P273 2699 aa10.98□□□□□ -0.65
CLCNKA-203ENST00000439316 RBM3P98179 157 aaKnown RBP10.98□□□□□ -0.65
CLCNKA-203ENST00000439316 UPK3BQ9BT76 320 aa10.98□□□□□ -0.65
CLCNKA-203ENST00000439316 UBL5Q9BZL1 73 aa10.98□□□□□ -0.65
CLCNKA-203ENST00000439316 PRB2P02812 416 aaPredicted RBP10.97□□□□□ -0.65
CLCNKA-203ENST00000439316 TRBV10-3A0A0K0K1G6 114 aa10.97□□□□□ -0.65
CLCNKA-203ENST00000439316 CYSTM1Q9H1C7 97 aa10.96□□□□□ -0.65
CLCNKA-203ENST00000439316 H3BQ85 93 aa10.96□□□□□ -0.66
CLCNKA-203ENST00000439316 TRAV23DV6A0A075B6W5 121 aa10.95□□□□□ -0.66
CLCNKA-203ENST00000439316 Q6ZQY7 126 aa10.95□□□□□ -0.66
CLCNKA-203ENST00000439316 RETNQ9HD89 108 aa10.95□□□□□ -0.66
CLCNKA-203ENST00000439316 DIRC1Q969H9 104 aa10.94□□□□□ -0.66
CLCNKA-203ENST00000439316 LAMTOR3Q9UHA4 124 aa10.94□□□□□ -0.66
CLCNKA-203ENST00000439316 FAM19A1Q7Z5A9 133 aa10.94□□□□□ -0.66
CLCNKA-203ENST00000439316 XAGE1AQ9HD64 81 aa10.93□□□□□ -0.66
CLCNKA-203ENST00000439316 M0R2N4 97 aa10.91□□□□□ -0.66
CLCNKA-203ENST00000439316 ZNF73O43830 326 aaPredicted RBP10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 GHRHP01286 108 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 KRTAP26-1Q6PEX3 210 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 H3BNG1 76 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 K7EIL1 84 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 VPREB1P12018 145 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 PDE6GP18545 87 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 WFDC10BQ8IUB3 73 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 DSCR8Q96T75 97 aa10.9□□□□□ -0.66
CLCNKA-203ENST00000439316 TRBV7-6A0A0J9YX20 115 aa10.89□□□□□ -0.67
CLCNKA-203ENST00000439316 COX7BP24311 80 aa10.89□□□□□ -0.67
CLCNKA-203ENST00000439316 ELOF1P60002 83 aaKnown RBP10.89□□□□□ -0.67
CLCNKA-203ENST00000439316 TMEM258P61165 79 aa10.89□□□□□ -0.67
CLCNKA-203ENST00000439316 KPRPQ5T749 579 aaPredicted RBP10.89□□□□□ -0.67
CLCNKA-203ENST00000439316 J3KT08 172 aa10.88□□□□□ -0.67
CLCNKA-203ENST00000439316 HIGD2BQ4VC39 106 aa10.88□□□□□ -0.67
CLCNKA-203ENST00000439316 CAMK2N2Q96S95 79 aa10.88□□□□□ -0.67
CLCNKA-203ENST00000439316 LINC01547P58512 204 aaPredicted RBP10.86□□□□□ -0.67
CLCNKA-203ENST00000439316 Q6ZVQ6 151 aa10.86□□□□□ -0.67
CLCNKA-203ENST00000439316 DNHD1Q96M86 4753 aa10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 TRBV7-4A0A0J9YYF1 115 aa10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 RPS28P62857 69 aaKnown RBP10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 Q6ZRU5 148 aa10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 C15orf56Q8N910 161 aa10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 M0R378 163 aa10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 MRAPQ8TCY5 172 aa10.85□□□□□ -0.67
CLCNKA-203ENST00000439316 LOC107984640A0A0U1RRK4 108 aa10.84□□□□□ -0.67
CLCNKA-203ENST00000439316 BCE1O60756 84 aa10.83□□□□□ -0.68
CLCNKA-203ENST00000439316 HUWE1Q7Z6Z7 4374 aaKnown RBP10.83□□□□□ -0.68
CLCNKA-203ENST00000439316 NDUFC2-KCTD14E9PQ53 114 aa10.82□□□□□ -0.68
CLCNKA-203ENST00000439316 CXCL6P80162 114 aa10.82□□□□□ -0.68
CLCNKA-203ENST00000439316 HAMPP81172 84 aa10.81□□□□□ -0.68
CLCNKA-203ENST00000439316 Q6ZTC4 211 aa10.81□□□□□ -0.68
CLCNKA-203ENST00000439316 LINC00528Q8N1L1 170 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms