RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ERG28Q9UKR5 140 aa7.09□□□□□ -1.27
COL28A1-203ENST00000435823 DMBT1Q9UGM3 2413 aaPredicted RBP7.08□□□□□ -1.28
COL28A1-203ENST00000435823 COX17Q14061 63 aa7.08□□□□□ -1.28
COL28A1-203ENST00000435823 LBHQ53QV2 105 aaPredicted RBP7.08□□□□□ -1.28
COL28A1-203ENST00000435823 C1orf137Q5JT78 98 aa7.08□□□□□ -1.28
COL28A1-203ENST00000435823 SERTAD4-AS1Q5TG53 156 aa7.08□□□□□ -1.28
COL28A1-203ENST00000435823 KRTAP7-1Q8IUC3 87 aa7.08□□□□□ -1.28
COL28A1-203ENST00000435823 ZNF625Q96I27 306 aaPredicted RBP7.08□□□□□ -1.28
COL28A1-203ENST00000435823 DPM2O94777 84 aa7.07□□□□□ -1.28
COL28A1-203ENST00000435823 LCE5AQ5TCM9 118 aa7.07□□□□□ -1.28
COL28A1-203ENST00000435823 C22orf24Q9Y442 160 aa7.07□□□□□ -1.28
COL28A1-203ENST00000435823 IGKCP01834 107 aa7.06□□□□□ -1.28
COL28A1-203ENST00000435823 HERVK_113P61574 105 aa7.06□□□□□ -1.28
COL28A1-203ENST00000435823 TP73-AS1Q9UF72 201 aa7.06□□□□□ -1.28
COL28A1-203ENST00000435823 PLA2G2DQ9UNK4 145 aa7.06□□□□□ -1.28
COL28A1-203ENST00000435823 ATP6V1G1O75348 118 aa7.05□□□□□ -1.28
COL28A1-203ENST00000435823 MRPL55Q7Z7F7 128 aaKnown RBP7.05□□□□□ -1.28
COL28A1-203ENST00000435823 PMCHL2Q9BQD1 86 aa7.05□□□□□ -1.28
COL28A1-203ENST00000435823 KRTAP9-8Q9BYQ0 159 aa7.05□□□□□ -1.28
COL28A1-203ENST00000435823 LEPROTO15243 131 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 LINC00158P58513 81 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 HERV-K104P63124 156 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 SRSF9Q13242 221 aaKnown RBP eCLIP7.04□□□□□ -1.28
COL28A1-203ENST00000435823 MEIG1Q5JSS6 88 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 REG3GQ6UW15 175 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 KRTAP11-1Q8IUC1 163 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 NKAPP1Q8N9T2 125 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 PLEKHB2Q96CS7 222 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 NDUFA12Q9UI09 145 aa7.04□□□□□ -1.28
COL28A1-203ENST00000435823 MYMXA0A1B0GTQ4 84 aa7.03□□□□□ -1.28
COL28A1-203ENST00000435823 LINC00587B1AMM8 73 aa7.03□□□□□ -1.28
COL28A1-203ENST00000435823 SYS1-DBNDD2H3BUS1 97 aa7.03□□□□□ -1.28
COL28A1-203ENST00000435823 IGLV7-43P04211 117 aa7.03□□□□□ -1.28
COL28A1-203ENST00000435823 COA6Q5JTJ3 125 aaKnown RBP7.03□□□□□ -1.28
COL28A1-203ENST00000435823 SND1-IT1Q9HBX3 110 aa7.03□□□□□ -1.28
COL28A1-203ENST00000435823 IGLV5-37A0A075B6J1 123 aa7.02□□□□□ -1.29
COL28A1-203ENST00000435823 A0A0U1RRA0 63 aa7.02□□□□□ -1.29
COL28A1-203ENST00000435823 RPL24P83731 157 aaKnown RBP7.02□□□□□ -1.29
COL28A1-203ENST00000435823 FAT3Q8TDW7 4589 aa7.01□□□□□ -1.29
COL28A1-203ENST00000435823 J3QQQ9 107 aa7.01□□□□□ -1.29
COL28A1-203ENST00000435823 LGALS3P17931 250 aaKnown RBP7.01□□□□□ -1.29
COL28A1-203ENST00000435823 PET117Q6UWS5 81 aa7.01□□□□□ -1.29
COL28A1-203ENST00000435823 DIRC1Q969H9 104 aa7.01□□□□□ -1.29
COL28A1-203ENST00000435823 LINC00167Q96N53 147 aa7.01□□□□□ -1.29
COL28A1-203ENST00000435823 GAGE10A6NGK3 116 aa7□□□□□ -1.29
COL28A1-203ENST00000435823 SMIM13P0DJ93 91 aa7□□□□□ -1.29
COL28A1-203ENST00000435823 NMUP48645 174 aa7□□□□□ -1.29
COL28A1-203ENST00000435823 TSPEAR-AS2P59090 65 aa7□□□□□ -1.29
COL28A1-203ENST00000435823 LRP1Q07954 4544 aaKnown RBP7□□□□□ -1.29
COL28A1-203ENST00000435823 RPL37AP8A6NKH3 93 aa6.99□□□□□ -1.29
COL28A1-203ENST00000435823 VPREB1P12018 145 aa6.99□□□□□ -1.29
COL28A1-203ENST00000435823 LINC01545Q5VT33 79 aa6.99□□□□□ -1.29
COL28A1-203ENST00000435823 LINC01600Q96MT4 127 aa6.99□□□□□ -1.29
COL28A1-203ENST00000435823 HERC1Q15751 4861 aa6.98□□□□□ -1.29
COL28A1-203ENST00000435823 E9PLD3 99 aa6.98□□□□□ -1.29
COL28A1-203ENST00000435823 C3orf79P0CE67 100 aa6.98□□□□□ -1.29
COL28A1-203ENST00000435823 KRTDAPP60985 99 aa6.98□□□□□ -1.29
COL28A1-203ENST00000435823 MIR7-3HGQ8N6C7 128 aa6.98□□□□□ -1.29
COL28A1-203ENST00000435823 C20orf202A1L168 122 aa6.97□□□□□ -1.29
COL28A1-203ENST00000435823 H0Y9J4 135 aa6.97□□□□□ -1.29
COL28A1-203ENST00000435823 BCE1O60756 84 aa6.97□□□□□ -1.29
COL28A1-203ENST00000435823 IGKV2-28A0A075B6P5 120 aa6.96□□□□□ -1.3
COL28A1-203ENST00000435823 ZNF861PO60384 105 aa6.96□□□□□ -1.3
COL28A1-203ENST00000435823 IGKV2D-28P01615 120 aa6.96□□□□□ -1.3
COL28A1-203ENST00000435823 MT1HL1P0DM35 61 aa6.96□□□□□ -1.3
COL28A1-203ENST00000435823 KRTAP9-7A8MTY7 169 aa6.95□□□□□ -1.3
COL28A1-203ENST00000435823 RPL28P46779 137 aaKnown RBP6.95□□□□□ -1.3
COL28A1-203ENST00000435823 BOD1L2Q8IYS8 172 aa6.95□□□□□ -1.3
COL28A1-203ENST00000435823 IGLV1-50A0A075B6I6 118 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 M0R378 163 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 S100A6P06703 90 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 S100A2P29034 98 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 UBE2AP49459 152 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 AKR1D1P51857 326 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 Q8NDZ9 215 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 MIEN1Q9BRT3 115 aa6.94□□□□□ -1.3
COL28A1-203ENST00000435823 DAND5Q8N907 189 aa6.93□□□□□ -1.3
COL28A1-203ENST00000435823 IGKV2D-26A0A0A0MRZ7 120 aa6.92□□□□□ -1.3
COL28A1-203ENST00000435823 A0A0J9YXY3 114 aa6.92□□□□□ -1.3
COL28A1-203ENST00000435823 NCR3O14931 201 aa6.92□□□□□ -1.3
COL28A1-203ENST00000435823 TMEM126AQ9H061 195 aa6.92□□□□□ -1.3
COL28A1-203ENST00000435823 KRTAP10-8P60410 259 aa6.91□□□□□ -1.3
COL28A1-203ENST00000435823 HIST3H2BBQ8N257 126 aa6.91□□□□□ -1.3
COL28A1-203ENST00000435823 LOC107984156A0A0G2JMH3 177 aa6.9□□□□□ -1.3
COL28A1-203ENST00000435823 ZNF815PA8K554 130 aa6.9□□□□□ -1.3
COL28A1-203ENST00000435823 TMEM238C9JI98 176 aa6.9□□□□□ -1.3
COL28A1-203ENST00000435823 S100A12P80511 92 aa6.9□□□□□ -1.3
COL28A1-203ENST00000435823 FAM19A1Q7Z5A9 133 aa6.9□□□□□ -1.3
COL28A1-203ENST00000435823 ARL17AQ8IVW1 177 aa6.9□□□□□ -1.3
COL28A1-203ENST00000435823 HIST1H2BLQ99880 126 aa6.89□□□□□ -1.31
COL28A1-203ENST00000435823 TRBV10-2A0A0K0K1G8 114 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 PRYO14603 147 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 TIMM17BO60830 172 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 NDUFC2O95298 119 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 KRTAP1-4P0C5Y4 121 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 PRLHP81277 87 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 KRTAP13-1Q8IUC0 172 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 ATOH7Q8N100 152 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 PRR26Q8N8Z3 221 aa6.88□□□□□ -1.31
COL28A1-203ENST00000435823 SPANXB1Q9NS25 103 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms