RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 MIEN1Q9BRT3 115 aa10.61□□□□□ -0.71
TTC28-202ENST00000431039 TP73-AS1Q9UF72 201 aa10.61□□□□□ -0.71
TTC28-202ENST00000431039 SMIM13P0DJ93 91 aa10.6□□□□□ -0.71
TTC28-202ENST00000431039 LINC00158P58513 81 aa10.6□□□□□ -0.71
TTC28-202ENST00000431039 SCXQ7RTU7 201 aa10.6□□□□□ -0.71
TTC28-202ENST00000431039 LITAFQ99732 161 aa10.6□□□□□ -0.71
TTC28-202ENST00000431039 HIGD1BQ9P298 99 aa10.6□□□□□ -0.71
TTC28-202ENST00000431039 UBR4Q5T4S7 5183 aa10.6□□□□□ -0.71
TTC28-202ENST00000431039 NDUFC2-KCTD14E9PQ53 114 aa10.59□□□□□ -0.71
TTC28-202ENST00000431039 TSTD3H0UI37 97 aa10.59□□□□□ -0.71
TTC28-202ENST00000431039 PFN2P35080 140 aa10.59□□□□□ -0.71
TTC28-202ENST00000431039 PKIGQ9Y2B9 76 aa10.59□□□□□ -0.71
TTC28-202ENST00000431039 ADAMTSL4-AS1Q5T5F5 129 aa10.58□□□□□ -0.72
TTC28-202ENST00000431039 C2orf91Q6ZV80 131 aa10.58□□□□□ -0.72
TTC28-202ENST00000431039 A0A0U1RRA0 63 aa10.57□□□□□ -0.72
TTC28-202ENST00000431039 LOC107984640A0A0U1RRK4 108 aa10.57□□□□□ -0.72
TTC28-202ENST00000431039 TMEM238C9JI98 176 aa10.57□□□□□ -0.72
TTC28-202ENST00000431039 SPANXB1Q9NS25 103 aaPredicted RBP10.57□□□□□ -0.72
TTC28-202ENST00000431039 SDIM1Q6ZPB5 146 aa10.56□□□□□ -0.72
TTC28-202ENST00000431039 Q6ZVH6 145 aa10.56□□□□□ -0.72
TTC28-202ENST00000431039 MIR7-3HGQ8N6C7 128 aa10.56□□□□□ -0.72
TTC28-202ENST00000431039 SPANXDQ9BXN6 97 aa10.56□□□□□ -0.72
TTC28-202ENST00000431039 SPANXCQ9NY87 97 aa10.56□□□□□ -0.72
TTC28-202ENST00000431039 Q6ZRP5 223 aa10.55□□□□□ -0.72
TTC28-202ENST00000431039 HNRNPA3P51991 378 aaKnown RBP10.54□□□□□ -0.72
TTC28-202ENST00000431039 PTTG1IPP53801 180 aa10.54□□□□□ -0.72
TTC28-202ENST00000431039 KRTAP10-4P60372 401 aaPredicted RBP10.53□□□□□ -0.72
TTC28-202ENST00000431039 SRSF9Q13242 221 aaKnown RBP eCLIP10.53□□□□□ -0.72
TTC28-202ENST00000431039 DAND5Q8N907 189 aa10.53□□□□□ -0.72
TTC28-202ENST00000431039 SND1-IT1Q9HBX3 110 aa10.53□□□□□ -0.72
TTC28-202ENST00000431039 LOC107984156A0A0G2JMH3 177 aa10.52□□□□□ -0.73
TTC28-202ENST00000431039 IFITM1P13164 125 aa10.52□□□□□ -0.73
TTC28-202ENST00000431039 RPL18AQ02543 176 aaKnown RBP10.52□□□□□ -0.73
TTC28-202ENST00000431039 TAL2Q16559 108 aa10.52□□□□□ -0.73
TTC28-202ENST00000431039 ARL17AQ8IVW1 177 aa10.52□□□□□ -0.73
TTC28-202ENST00000431039 CIRBP-AS1Q8TBR5 109 aa10.52□□□□□ -0.73
TTC28-202ENST00000431039 PPDPFQ9H3Y8 114 aa10.52□□□□□ -0.73
TTC28-202ENST00000431039 GAGE2BQ13066 116 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 GAGE2EQ4V326 116 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 SERTAD4-AS1Q5TG53 156 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 LINC00308Q8TCZ7 52 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 COPS9Q8WXC6 57 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 HIST1H4GQ99525 98 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 GAGE2DQ9UEU5 116 aa10.51□□□□□ -0.73
TTC28-202ENST00000431039 A0A096LNI7 61 aa10.49□□□□□ -0.73
TTC28-202ENST00000431039 HSD52Q0P140 79 aa10.49□□□□□ -0.73
TTC28-202ENST00000431039 SOSTDC1Q6X4U4 206 aa10.49□□□□□ -0.73
TTC28-202ENST00000431039 MUSTN1Q8IVN3 82 aa10.49□□□□□ -0.73
TTC28-202ENST00000431039 XAGE1AQ9HD64 81 aa10.49□□□□□ -0.73
TTC28-202ENST00000431039 LINC00474Q9P2X8 69 aa10.49□□□□□ -0.73
TTC28-202ENST00000431039 DDTP30046 118 aa10.48□□□□□ -0.73
TTC28-202ENST00000431039 C9orf129Q5T035 196 aaKnown RBP10.48□□□□□ -0.73
TTC28-202ENST00000431039 EIF4EBP3O60516 100 aaPredicted RBP10.47□□□□□ -0.73
TTC28-202ENST00000431039 OXTP01178 125 aa10.47□□□□□ -0.73
TTC28-202ENST00000431039 NPC2P61916 151 aa10.46□□□□□ -0.73
TTC28-202ENST00000431039 CTAG1AP78358 180 aa10.46□□□□□ -0.73
TTC28-202ENST00000431039 PLA2G2DQ9UNK4 145 aa10.46□□□□□ -0.73
TTC28-202ENST00000431039 IGKV2-24A0A0C4DH68 120 aa10.45□□□□□ -0.74
TTC28-202ENST00000431039 CEND1Q8N111 149 aa10.45□□□□□ -0.74
TTC28-202ENST00000431039 CHTF8P0CG12 524 aa10.44□□□□□ -0.74
TTC28-202ENST00000431039 RPL37AP61513 92 aaKnown RBP10.44□□□□□ -0.74
TTC28-202ENST00000431039 RPL24P83731 157 aaKnown RBP10.44□□□□□ -0.74
TTC28-202ENST00000431039 SPACA4Q8TDM5 124 aa10.44□□□□□ -0.74
TTC28-202ENST00000431039 NDUFC2O95298 119 aa10.43□□□□□ -0.74
TTC28-202ENST00000431039 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.43□□□□□ -0.74
TTC28-202ENST00000431039 PANO1I0J062 215 aa10.42□□□□□ -0.74
TTC28-202ENST00000431039 VPREB1P12018 145 aa10.41□□□□□ -0.74
TTC28-202ENST00000431039 Q8NDZ9 215 aa10.41□□□□□ -0.74
TTC28-202ENST00000431039 IGLV5-37A0A075B6J1 123 aa10.4□□□□□ -0.74
TTC28-202ENST00000431039 A0A1W2PNN7 141 aa10.4□□□□□ -0.74
TTC28-202ENST00000431039 A4D1N5 150 aa10.4□□□□□ -0.74
TTC28-202ENST00000431039 M0R143 59 aa10.4□□□□□ -0.74
TTC28-202ENST00000431039 TMEM238LA0A1B0GVL6 79 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 FAM168BA1KXE4 195 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 A6NJY4 79 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 FXYD2P54710 66 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 BVES-AS1Q5T3Y7 98 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 KRTAP7-1Q8IUC3 87 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 DPH3Q96FX2 82 aa10.39□□□□□ -0.75
TTC28-202ENST00000431039 TRBV10-2A0A0K0K1G8 114 aa10.38□□□□□ -0.75
TTC28-202ENST00000431039 PCP4L1A6NKN8 68 aa10.38□□□□□ -0.75
TTC28-202ENST00000431039 HINT1P49773 126 aaPredicted RBP10.37□□□□□ -0.75
TTC28-202ENST00000431039 PRR3P79522 188 aaKnown RBP10.37□□□□□ -0.75
TTC28-202ENST00000431039 PLAC8Q9NZF1 115 aa10.37□□□□□ -0.75
TTC28-202ENST00000431039 IGKV2-28A0A075B6P5 120 aa10.36□□□□□ -0.75
TTC28-202ENST00000431039 A0A087WYN8 130 aa10.36□□□□□ -0.75
TTC28-202ENST00000431039 M0R378 163 aa10.36□□□□□ -0.75
TTC28-202ENST00000431039 IGKV2D-28P01615 120 aa10.36□□□□□ -0.75
TTC28-202ENST00000431039 FAM19A5Q7Z5A7 132 aaPredicted RBP10.36□□□□□ -0.75
TTC28-202ENST00000431039 C22orf24Q9Y442 160 aa10.36□□□□□ -0.75
TTC28-202ENST00000431039 CFC1BP0CG36 223 aa10.35□□□□□ -0.75
TTC28-202ENST00000431039 CFC1P0CG37 223 aa10.35□□□□□ -0.75
TTC28-202ENST00000431039 NKAPP1Q8N9T2 125 aa10.35□□□□□ -0.75
TTC28-202ENST00000431039 TRAV13-2A0A0B4J235 113 aa10.33□□□□□ -0.76
TTC28-202ENST00000431039 A0A0B4J2C4 111 aa10.33□□□□□ -0.76
TTC28-202ENST00000431039 A0A1B0GWB2 263 aa10.33□□□□□ -0.76
TTC28-202ENST00000431039 NCR3O14931 201 aa10.33□□□□□ -0.76
TTC28-202ENST00000431039 LBHQ53QV2 105 aaPredicted RBP10.33□□□□□ -0.76
TTC28-202ENST00000431039 M0QXV9 152 aa10.32□□□□□ -0.76
TTC28-202ENST00000431039 MRPL55Q7Z7F7 128 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms