RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TSKUQ8WUA8 353 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 RPRMQ9NS64 109 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 MYOFQ9NZM1 2061 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 KNL1Q8NG31 2342 aa1.39□□□□□ -2.19
USP40-204ENST00000427947 TANC1Q9C0D5 1861 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 PIGBOS1A0A0B4J2F0 54 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 CXorf51AA0A1B0GTR3 108 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 LOC101927531A0A1B0GV80 90 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 PVALEFA0A1B0GWK0 134 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 HIGD1CA8MV81 97 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 IGHV3-30P01768 117 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 IGHV3-30-5P0DP03 117 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 SNRPFP62306 86 aaKnown RBP1.38□□□□□ -2.19
USP40-204ENST00000427947 RBM3P98179 157 aaKnown RBP1.38□□□□□ -2.19
USP40-204ENST00000427947 IFI27L1Q96BM0 104 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 LINC00526Q96FQ7 95 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 ODF3Q96PU9 254 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 WNK2Q9Y3S1 2297 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 HUWE1Q7Z6Z7 4374 aaKnown RBP1.38□□□□□ -2.19
USP40-204ENST00000427947 ANKRD36A6QL64 1941 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 ALPK2Q86TB3 2170 aa1.38□□□□□ -2.19
USP40-204ENST00000427947 RBP2P50120 134 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 C9orf116Q5BN46 136 aaPredicted RBP1.37□□□□□ -2.19
USP40-204ENST00000427947 Q6AWC8 147 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 CYP2G1PQ6ZSU1 146 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 Q86TA4 180 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 SVBPQ8N300 66 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 DEFB119Q8N690 84 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 C14orf144Q96I85 54 aa1.37□□□□□ -2.19
USP40-204ENST00000427947 HRNRQ86YZ3 2850 aaPredicted RBP1.36□□□□□ -2.19
USP40-204ENST00000427947 TRAV12-3A0A0B4J271 114 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 FXYD1O00168 92 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 NCR3O14931 201 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 CBLN1P23435 193 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 NPC2P61916 151 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 C12orf73Q69YU5 71 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 Q6ZS92 163 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 C10orf82Q8WW14 230 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 PPP3R2Q96LZ3 170 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 C22orf24Q9Y442 160 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 DNAH5Q8TE73 4624 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 F5P12259 2224 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 GOLGA4Q13439 2230 aaKnown RBP1.36□□□□□ -2.19
USP40-204ENST00000427947 ABCA1O95477 2261 aa1.36□□□□□ -2.19
USP40-204ENST00000427947 OOSP1A8MZH6 123 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 TNFP01375 233 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 IFNA17P01571 189 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 INSL4Q14641 139 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 ZNF720Q7Z2F6 126 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 SBSPONQ8IVN8 264 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 SMR3AQ99954 134 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 TNRC6BQ9UPQ9 1833 aaKnown RBP1.35□□□□□ -2.19
USP40-204ENST00000427947 CR1P17927 2039 aa1.35□□□□□ -2.19
USP40-204ENST00000427947 SPAG17Q6Q759 2223 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 SMIM6P0DI80 62 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 HMGA1P17096 107 aaKnown RBP1.34□□□□□ -2.19
USP40-204ENST00000427947 Q6ZQY7 126 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 NDUFA11Q86Y39 141 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 DSCR8Q96T75 97 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 SPANXDQ9BXN6 97 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 IER3IP1Q9Y5U9 82 aa1.34□□□□□ -2.19
USP40-204ENST00000427947 PI4KAP42356 2102 aa1.34□□□□□ -2.2
USP40-204ENST00000427947 ARFGEF3Q5TH69 2177 aa1.34□□□□□ -2.2
USP40-204ENST00000427947 TNRC6AQ8NDV7 1962 aaKnown RBP1.34□□□□□ -2.2
USP40-204ENST00000427947 NINQ8N4C6 2090 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 TRBV10-3A0A0K0K1G6 114 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 LCE6AA0A183 80 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 FAM24AA6NFZ4 105 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 LYNX1P0DP58 116 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 IFITM1P13164 125 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 FXYD3Q14802 87 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 XAF1Q6GPH4 301 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 C8orf59Q8N0T1 100 aaPredicted RBP1.33□□□□□ -2.2
USP40-204ENST00000427947 Q8N8P6 123 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 DEFB124Q8NES8 71 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 AMELYQ99218 206 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 EML5Q05BV3 1969 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 UNC13CQ8NB66 2214 aa1.33□□□□□ -2.2
USP40-204ENST00000427947 KNTC1P50748 2209 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 ASCC3Q8N3C0 2202 aaKnown RBP1.32□□□□□ -2.2
USP40-204ENST00000427947 TEX49A0A1B0GTD5 131 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 TMEM218A2RU14 115 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 Q6ZSA8 131 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 LINC00208Q96KT6 92 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 CCL19Q99731 98 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 EXPH5Q8NEV8 1989 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 DNAH10Q8IVF4 4471 aa1.32□□□□□ -2.2
USP40-204ENST00000427947 SNRNP200O75643 2136 aaKnown RBP1.31□□□□□ -2.2
USP40-204ENST00000427947 INTS1Q8N201 2190 aaKnown RBP1.31□□□□□ -2.2
USP40-204ENST00000427947 A0A1W2PPM0 123 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 C10orf142B7Z368 130 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 SPINK8P0C7L1 97 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 HSD52Q0P140 79 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 ZNF56Q15929 161 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 C20orf197Q8N268 126 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 AQP10Q96PS8 301 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 COA4Q9NYJ1 87 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 PLXNA2O75051 1894 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 PLCE1Q9P212 2302 aa1.31□□□□□ -2.2
USP40-204ENST00000427947 TRAV13-2A0A0B4J235 113 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms