RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 EIF4EBP3O60516 100 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 ADIRFQ15847 76 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 TRBV10-2A0A0K0K1G8 114 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 C20orf203Q8NBC4 194 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 R4GN34 69 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 A8MTW9 85 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 C15orf65H3BRN8 121 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 CFAP126Q5VTH2 177 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 Q6AWC8 147 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 Q8N9P0 234 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 FMC1Q96HJ9 113 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 SPANXA1Q9NS26 97 aa1.66□□□□□ -2.14
CCDC88A-205ENST00000426576 DNAH2Q9P225 4427 aa1.65□□□□□ -2.14
CCDC88A-205ENST00000426576 TRBV6-6A0A0A6YYG2 114 aa1.65□□□□□ -2.14
CCDC88A-205ENST00000426576 HIST1H3AP68431 136 aa1.65□□□□□ -2.14
CCDC88A-205ENST00000426576 IFITM3Q01628 133 aa1.65□□□□□ -2.14
CCDC88A-205ENST00000426576 TPRXLQ17RH7 258 aa1.65□□□□□ -2.14
CCDC88A-205ENST00000426576 UNQ6190/PRO20217Q6UXQ8 127 aa1.65□□□□□ -2.14
CCDC88A-205ENST00000426576 H3BRN7 92 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 CT83Q5H943 113 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 BAGE3Q86Y29 109 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 TMEM223A0PJW6 202 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 MAP1LC3B2A6NCE7 125 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 IFITM5A6NNB3 132 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 HSBP1O75506 76 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 LINC00575Q6W349 94 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 MAP1LC3BQ9GZQ8 125 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 PRR13Q9NZ81 148 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 SYNE2Q8WXH0 6885 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 LINC00959A0A1B0GUT2 108 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 A8MUN3 132 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 ACYP1P07311 99 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 SMIM13P0DJ93 91 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 GNG5P63218 68 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 Q75L30 129 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 TMEM141Q96I45 108 aa1.65□□□□□ -2.15
CCDC88A-205ENST00000426576 I3L2K1 104 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 TIMM17BO60830 172 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 RPS29P62273 56 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 C14orf132Q9NPU4 83 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 ZNF106Q9H2Y7 1883 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 TEX49A0A1B0GTD5 131 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 A0A1B0GUT8 65 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 Q6ZUT4 128 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 TP53TG3Q9ULZ0 132 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 DNAH11Q96DT5 4516 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 SCO2A0A1W2PP80 73 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 ARPC5O15511 151 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 LCE5AQ5TCM9 118 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 PET117Q6UWS5 81 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 SDIM1Q6ZPB5 146 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 NTM-AS1Q6ZSK4 140 aa1.64□□□□□ -2.15
CCDC88A-205ENST00000426576 CPAMD8Q8IZJ3 1885 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 TRBV19A0A075B6N1 114 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 KRTAP10-8P60410 259 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 CRIP3Q6Q6R5 217 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 SERP2Q8N6R1 65 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 TNRC6BQ9UPQ9 1833 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 EPPK1P58107 5090 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 IGLV4-60A0A075B6I1 120 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 MRPS12O15235 138 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 DNAH10Q8IVF4 4471 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 G3V3Q6 166 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 K7EP34 96 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 IGFL1Q6UW32 110 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 PLEKHB2Q96CS7 222 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 SMIM12Q96EX1 92 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 MUC5BQ9HC84 5762 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 A0A1W2PNM2 257 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 MIR17HGQ75NE6 70 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 SMIM7Q9BQ49 75 aa1.63□□□□□ -2.15
CCDC88A-205ENST00000426576 SFT2D2O95562 160 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 FABP9Q0Z7S8 132 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 C2orf82Q6UX34 121 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 SEC11CQ9BY50 192 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 BATF3Q9NR55 127 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 IGLC6P0CF74 106 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 RNASE7Q9H1E1 156 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 NAT8BQ9UHF3 227 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 DNAH17Q9UFH2 4485 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 H0YIZ8 118 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 FAM19A4Q96LR4 140 aa1.62□□□□□ -2.15
CCDC88A-205ENST00000426576 SPINK8P0C7L1 97 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 LINC00614P0C842 121 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 ASB16-AS1Q495Z4 193 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 SMDT1Q9H4I9 107 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 ERG28Q9UKR5 140 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 HRNRQ86YZ3 2850 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 TRBV24-1A0A075B6N3 115 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 TMEM238C9JI98 176 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 AGMATQ9BSE5 352 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 CTXND1A0A1B0GTU2 59 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 S100A2P29034 98 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 RPL29P47914 159 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 NREPQ16612 68 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 Q5BKY6 102 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 VAMP8Q9BV40 100 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 RYR3Q15413 4870 aa1.61□□□□□ -2.15
CCDC88A-205ENST00000426576 TRAV23DV6A0A075B6W5 121 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms