RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DPH3Q96FX2 82 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 CARD19Q96LW7 228 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 CST9LQ9H4G1 147 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 GEMIN7Q9H840 131 aaKnown RBP1.56□□□□□ -2.16
VPS13A-208ENST00000423463 LINC00474Q9P2X8 69 aa1.56□□□□□ -2.16
VPS13A-208ENST00000423463 A0A0J9YXV3 536 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 LOC107984640A0A0U1RRK4 108 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 TINCRA0A1B0GVN0 87 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 NDUFA1O15239 70 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 TRGC2P03986 189 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 SPAG11BQ08648 103 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 KIAA0087Q14695 138 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 PDZD11Q5EBL8 140 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 C9orf129Q5T035 196 aaKnown RBP1.55□□□□□ -2.16
VPS13A-208ENST00000423463 SCXQ7RTU7 201 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 BAGE3Q86Y29 109 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 CIRBP-AS1Q8TBR5 109 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 LINC00526Q96FQ7 95 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 CAMK2N2Q96S95 79 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 KRTAP4-4Q9BYR3 166 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 A0A096LNJ9 63 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 HSBP1O75506 76 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 SMR3BP02814 79 aaPredicted RBP1.55□□□□□ -2.16
VPS13A-208ENST00000423463 Q6ZRU5 148 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 MRPL35Q9NZE8 188 aaKnown RBP1.55□□□□□ -2.16
VPS13A-208ENST00000423463 CDKN2A-AS1Q9UH64 79 aa1.55□□□□□ -2.16
VPS13A-208ENST00000423463 EPPK1P58107 5090 aaKnown RBP1.55□□□□□ -2.16
VPS13A-208ENST00000423463 TRBV30A0A0K0K1B3 111 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 H3BRM9 83 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 TLX1NBP0CAT3 122 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 IGLC3P0DOY3 106 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 NDUFA6P56556 154 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 C6orf226Q5I0X4 101 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 Q5VSD8 79 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 UNQ6190/PRO20217Q6UXQ8 127 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 Q8IZM0 81 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 LINC00469Q8N7U9 141 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 SPACA4Q8TDM5 124 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 IFI27L1Q96BM0 104 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 PACRGQ96M98 296 aaPredicted RBP1.54□□□□□ -2.16
VPS13A-208ENST00000423463 PLAC8Q9NZF1 115 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 A0A096LNI7 61 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 TRAV12-1A0A0B4J245 112 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 PANO1I0J062 215 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 INAFM2P0DMQ5 153 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 CXCL5P42830 114 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 CKS1BP61024 79 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 HAMPP81172 84 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 PMCHL1Q16048 86 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 MAJINQ3KP22 176 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 TOMM7Q9P0U1 55 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 C6orf48Q9UBA6 75 aa1.54□□□□□ -2.16
VPS13A-208ENST00000423463 CHTOPQ9Y3Y2 248 aaKnown RBP1.54□□□□□ -2.16
VPS13A-208ENST00000423463 IGKV2-24A0A0C4DH68 120 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 PCP4L1A6NKN8 68 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 CHTF8P0CG12 524 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 RPL13AP40429 203 aaKnown RBP1.53□□□□□ -2.16
VPS13A-208ENST00000423463 C2orf82Q6UX34 121 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 CEND1Q8N111 149 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 FAM19A2Q8N3H0 131 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 COX7B2Q8TF08 81 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 DNAH2Q9P225 4427 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 C11orf86A6NJI1 115 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 NDUFC2-KCTD14E9PQ53 114 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 F8VRH5 84 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BKO60814 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 LEPROTL1O95214 131 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BJP06899 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 ZNF22P17026 224 aaPredicted RBP1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BOP23527 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BBP33778 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BDP58876 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 RPL37AP61513 92 aaKnown RBP1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BCP62807 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST2H2BEQ16778 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.53□□□□□ -2.16
VPS13A-208ENST00000423463 Q6ZVH6 145 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 C7orf33Q8WU49 177 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BHQ93079 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 LINC00167Q96N53 147 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BNQ99877 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HIST1H2BMQ99879 126 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 HSPB8Q9UJY1 196 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 DNAH11Q96DT5 4516 aa1.53□□□□□ -2.16
VPS13A-208ENST00000423463 NUPR1O60356 82 aa1.53□□□□□ -2.17
VPS13A-208ENST00000423463 SPINK8P0C7L1 97 aa1.53□□□□□ -2.17
VPS13A-208ENST00000423463 RPL18AQ02543 176 aaKnown RBP1.53□□□□□ -2.17
VPS13A-208ENST00000423463 C9orf116Q5BN46 136 aaPredicted RBP1.53□□□□□ -2.17
VPS13A-208ENST00000423463 COA6Q5JTJ3 125 aaKnown RBP1.53□□□□□ -2.17
VPS13A-208ENST00000423463 TMEM170BQ5T4T1 132 aa1.53□□□□□ -2.17
VPS13A-208ENST00000423463 SFTA2Q6UW10 78 aa1.53□□□□□ -2.17
VPS13A-208ENST00000423463 ANAPC11Q9NYG5 84 aa1.53□□□□□ -2.17
VPS13A-208ENST00000423463 HERC2O95714 4834 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 FAT2Q9NYQ8 4349 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 FRAS1Q86XX4 4008 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 DYNC1H1Q14204 4646 aaKnown RBP1.52□□□□□ -2.17
VPS13A-208ENST00000423463 A0A1W2PNN7 141 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 TMEM223A0PJW6 202 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 FABP4P15090 132 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP10-4P60372 401 aaPredicted RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms