RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 M0R378 163 aa6.74□□□□□ -1.33
SQSTM1-203ENST00000422245 CTAG1AP78358 180 aa6.73□□□□□ -1.33
SQSTM1-203ENST00000422245 Q8NDZ9 215 aa6.73□□□□□ -1.33
SQSTM1-203ENST00000422245 CHTOPQ9Y3Y2 248 aaKnown RBP6.73□□□□□ -1.33
SQSTM1-203ENST00000422245 SNAPINO95295 136 aa6.72□□□□□ -1.33
SQSTM1-203ENST00000422245 NDUFA5Q16718 116 aa6.72□□□□□ -1.33
SQSTM1-203ENST00000422245 SVBPQ8N300 66 aa6.72□□□□□ -1.33
SQSTM1-203ENST00000422245 TRAV12-1A0A0B4J245 112 aa6.71□□□□□ -1.34
SQSTM1-203ENST00000422245 APOC3P02656 99 aa6.71□□□□□ -1.34
SQSTM1-203ENST00000422245 LINC00158P58513 81 aa6.71□□□□□ -1.34
SQSTM1-203ENST00000422245 CBLN2Q8IUK8 224 aa6.71□□□□□ -1.34
SQSTM1-203ENST00000422245 CHCHD1Q96BP2 118 aaKnown RBP6.71□□□□□ -1.34
SQSTM1-203ENST00000422245 TMEM223A0PJW6 202 aa6.7□□□□□ -1.34
SQSTM1-203ENST00000422245 IFI27L1Q96BM0 104 aa6.7□□□□□ -1.34
SQSTM1-203ENST00000422245 PLEKHB2Q96CS7 222 aa6.7□□□□□ -1.34
SQSTM1-203ENST00000422245 RETNLBQ9BQ08 111 aa6.7□□□□□ -1.34
SQSTM1-203ENST00000422245 HIGD2AQ9BW72 106 aa6.7□□□□□ -1.34
SQSTM1-203ENST00000422245 ZNF706Q9Y5V0 76 aaPredicted RBP6.69□□□□□ -1.34
SQSTM1-203ENST00000422245 PRYO14603 147 aa6.68□□□□□ -1.34
SQSTM1-203ENST00000422245 ATP6V1G1O75348 118 aa6.68□□□□□ -1.34
SQSTM1-203ENST00000422245 TPRXLQ17RH7 258 aa6.68□□□□□ -1.34
SQSTM1-203ENST00000422245 A0A0U1RRA0 63 aa6.67□□□□□ -1.34
SQSTM1-203ENST00000422245 HERV-K104P63124 156 aa6.67□□□□□ -1.34
SQSTM1-203ENST00000422245 MEIG1Q5JSS6 88 aa6.67□□□□□ -1.34
SQSTM1-203ENST00000422245 BOD1L2Q8IYS8 172 aa6.67□□□□□ -1.34
SQSTM1-203ENST00000422245 SPRR4Q96PI1 79 aa6.67□□□□□ -1.34
SQSTM1-203ENST00000422245 IGLV7-46A0A075B6I9 117 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 LINC00587B1AMM8 73 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 SMIM13P0DJ93 91 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 SPAG11AQ6PDA7 123 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 C3orf22Q8N5N4 141 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 YPEL4Q96NS1 127 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 CDIP1Q9H305 208 aa6.66□□□□□ -1.34
SQSTM1-203ENST00000422245 HSBP1O75506 76 aa6.65□□□□□ -1.34
SQSTM1-203ENST00000422245 MIR7-3HGQ8N6C7 128 aa6.65□□□□□ -1.34
SQSTM1-203ENST00000422245 LINC00337Q8N6G1 96 aa6.65□□□□□ -1.34
SQSTM1-203ENST00000422245 NDUFA12Q9UI09 145 aa6.65□□□□□ -1.34
SQSTM1-203ENST00000422245 MYMXA0A1B0GTQ4 84 aa6.64□□□□□ -1.35
SQSTM1-203ENST00000422245 NCR3O14931 201 aa6.64□□□□□ -1.35
SQSTM1-203ENST00000422245 SPRR1AP35321 89 aa6.64□□□□□ -1.35
SQSTM1-203ENST00000422245 MAP1LC3CQ9BXW4 147 aa6.64□□□□□ -1.35
SQSTM1-203ENST00000422245 KCNQ1DNQ9H478 68 aa6.64□□□□□ -1.35
SQSTM1-203ENST00000422245 ETDCA0A1B0GVM5 59 aa6.63□□□□□ -1.35
SQSTM1-203ENST00000422245 S100A12P80511 92 aa6.62□□□□□ -1.35
SQSTM1-203ENST00000422245 FP248Q71RG6 208 aaPredicted RBP6.62□□□□□ -1.35
SQSTM1-203ENST00000422245 FAT4Q6V0I7 4981 aa6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 TRBV10-3A0A0K0K1G6 114 aa6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 KRTAP4-16G5E9R7 235 aaPredicted RBP6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 PLNP26678 52 aa6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 C4orf48Q5BLP8 95 aa6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 FAM19A2Q8N3H0 131 aa6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 PPDPFQ9H3Y8 114 aa6.61□□□□□ -1.35
SQSTM1-203ENST00000422245 H0Y8G0 127 aa6.6□□□□□ -1.35
SQSTM1-203ENST00000422245 LINC00483Q53H64 154 aa6.6□□□□□ -1.35
SQSTM1-203ENST00000422245 Q8NBF4 154 aa6.6□□□□□ -1.35
SQSTM1-203ENST00000422245 TRBV10-2A0A0K0K1G8 114 aa6.59□□□□□ -1.35
SQSTM1-203ENST00000422245 LEPROTO15243 131 aa6.59□□□□□ -1.35
SQSTM1-203ENST00000422245 LEPROTL1O95214 131 aa6.59□□□□□ -1.35
SQSTM1-203ENST00000422245 TSPEAR-AS2P59090 65 aa6.59□□□□□ -1.35
SQSTM1-203ENST00000422245 SMCR5Q8TEV8 140 aa6.59□□□□□ -1.35
SQSTM1-203ENST00000422245 MUC17Q685J3 4493 aa6.59□□□□□ -1.35
SQSTM1-203ENST00000422245 LOC107984156A0A0G2JMH3 177 aa6.58□□□□□ -1.36
SQSTM1-203ENST00000422245 SERF1AO75920 110 aa6.58□□□□□ -1.36
SQSTM1-203ENST00000422245 NMUP48645 174 aa6.58□□□□□ -1.36
SQSTM1-203ENST00000422245 HERVK_113P61574 105 aa6.58□□□□□ -1.36
SQSTM1-203ENST00000422245 ARL17AQ8IVW1 177 aa6.58□□□□□ -1.36
SQSTM1-203ENST00000422245 SPANXB1Q9NS25 103 aaPredicted RBP6.58□□□□□ -1.36
SQSTM1-203ENST00000422245 B5MCH6 92 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 J3QQQ9 107 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 SPINK1P00995 79 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 TRGC2P03986 189 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 DDTP30046 118 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 LCE2AQ5TA79 106 aaPredicted RBP6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 DAND5Q8N907 189 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 MIEN1Q9BRT3 115 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 HSPB8Q9UJY1 196 aa6.57□□□□□ -1.36
SQSTM1-203ENST00000422245 DPM2O94777 84 aa6.56□□□□□ -1.36
SQSTM1-203ENST00000422245 LGALS3P17931 250 aaKnown RBP6.56□□□□□ -1.36
SQSTM1-203ENST00000422245 LINC00310P59036 64 aa6.56□□□□□ -1.36
SQSTM1-203ENST00000422245 GAGE2AQ6NT46 116 aa6.56□□□□□ -1.36
SQSTM1-203ENST00000422245 RPS29P62273 56 aaKnown RBP6.55□□□□□ -1.36
SQSTM1-203ENST00000422245 Q6ZRX8 168 aa6.55□□□□□ -1.36
SQSTM1-203ENST00000422245 NDUFC2O95298 119 aa6.54□□□□□ -1.36
SQSTM1-203ENST00000422245 MOBPQ13875 183 aa6.54□□□□□ -1.36
SQSTM1-203ENST00000422245 KRTAP13-3Q3SY46 172 aa6.54□□□□□ -1.36
SQSTM1-203ENST00000422245 IGLV9-49A0A0B4J1Y8 123 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 ERC2-IT1O76042 136 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 IGLV6-57P01721 117 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 IGKCP01834 107 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 S100A7L2Q5SY68 101 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 PMCHL2Q9BQD1 86 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 Q9BRP9 147 aa6.53□□□□□ -1.36
SQSTM1-203ENST00000422245 TRAV23DV6A0A075B6W5 121 aa6.52□□□□□ -1.37
SQSTM1-203ENST00000422245 FABP4P15090 132 aa6.52□□□□□ -1.37
SQSTM1-203ENST00000422245 JOSD1Q15040 202 aaPredicted RBP6.52□□□□□ -1.37
SQSTM1-203ENST00000422245 SSBP3-AS1Q7Z2R9 100 aa6.52□□□□□ -1.37
SQSTM1-203ENST00000422245 KRTAP9-2Q9BYQ4 174 aa6.51□□□□□ -1.37
SQSTM1-203ENST00000422245 ZNF73O43830 326 aaPredicted RBP6.5□□□□□ -1.37
SQSTM1-203ENST00000422245 ASB16-AS1Q495Z4 193 aa6.5□□□□□ -1.37
SQSTM1-203ENST00000422245 CBY1Q9Y3M2 126 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms