RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 MIR22HGQ0VDD5 57 aa9.45□□□□□ -0.9
CCDC88A-204ENST00000413716 C11orf72Q8NBR9 251 aa9.45□□□□□ -0.9
CCDC88A-204ENST00000413716 LOC101927531A0A1B0GV80 90 aa9.45□□□□□ -0.9
CCDC88A-204ENST00000413716 BRWD1-AS2P59051 145 aa9.44□□□□□ -0.9
CCDC88A-204ENST00000413716 EPM2AB3EWF7 344 aa9.44□□□□□ -0.9
CCDC88A-204ENST00000413716 SMCR5Q8TEV8 140 aa9.44□□□□□ -0.9
CCDC88A-204ENST00000413716 PLA2G5P39877 138 aa9.43□□□□□ -0.9
CCDC88A-204ENST00000413716 C18orf65Q6ZTR6 163 aa9.43□□□□□ -0.9
CCDC88A-204ENST00000413716 LY6G6DO95868 133 aa9.43□□□□□ -0.9
CCDC88A-204ENST00000413716 COA5Q86WW8 74 aa9.42□□□□□ -0.9
CCDC88A-204ENST00000413716 IGLV1-40P01703 118 aa9.42□□□□□ -0.9
CCDC88A-204ENST00000413716 C22orf24Q9Y442 160 aa9.41□□□□□ -0.9
CCDC88A-204ENST00000413716 EDN2P20800 178 aa9.41□□□□□ -0.9
CCDC88A-204ENST00000413716 LOC110117498A0A087WWA1 95 aa9.41□□□□□ -0.9
CCDC88A-204ENST00000413716 C11orf71Q6IPW1 123 aa9.41□□□□□ -0.9
CCDC88A-204ENST00000413716 LINC01006Q8NI28 216 aa9.4□□□□□ -0.9
CCDC88A-204ENST00000413716 C1orf229Q6ZS94 237 aaPredicted RBP9.4□□□□□ -0.9
CCDC88A-204ENST00000413716 TM2D3Q9BRN9 247 aa9.39□□□□□ -0.91
CCDC88A-204ENST00000413716 CDC42SE1Q9NRR8 79 aa9.39□□□□□ -0.91
CCDC88A-204ENST00000413716 MTORP42345 2549 aa9.39□□□□□ -0.91
CCDC88A-204ENST00000413716 USP24Q9UPU5 2620 aa9.39□□□□□ -0.91
CCDC88A-204ENST00000413716 C9orf129Q5T035 196 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-204ENST00000413716 Q8NBF4 154 aa9.38□□□□□ -0.91
CCDC88A-204ENST00000413716 Q96NJ1 140 aa9.38□□□□□ -0.91
CCDC88A-204ENST00000413716 Q6ZRU5 148 aa9.37□□□□□ -0.91
CCDC88A-204ENST00000413716 ZNF580Q9UK33 172 aa9.37□□□□□ -0.91
CCDC88A-204ENST00000413716 LCA10Q71F78 164 aa9.37□□□□□ -0.91
CCDC88A-204ENST00000413716 ELOF1P60002 83 aaKnown RBP9.37□□□□□ -0.91
CCDC88A-204ENST00000413716 Q6ZQT0 140 aa9.36□□□□□ -0.91
CCDC88A-204ENST00000413716 BPTFQ12830 3046 aa9.36□□□□□ -0.91
CCDC88A-204ENST00000413716 LYPD5Q6UWN5 251 aa9.36□□□□□ -0.91
CCDC88A-204ENST00000413716 CSNK1G2-AS1Q8NCQ2 148 aa9.35□□□□□ -0.91
CCDC88A-204ENST00000413716 FAM229AH3BQW9 127 aa9.35□□□□□ -0.91
CCDC88A-204ENST00000413716 NHLRC4P0CG21 123 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-204ENST00000413716 TYMSOSQ8TAI1 123 aa9.34□□□□□ -0.91
CCDC88A-204ENST00000413716 BRI3O95415 125 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 CHD8Q9HCK8 2581 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 Q6ZPA2 131 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 CENPFP49454 3210 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 LINC00476Q8WZB0 136 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 Q8NA96 180 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 FAM19A4Q96LR4 140 aa9.33□□□□□ -0.92
CCDC88A-204ENST00000413716 A8MUN3 132 aa9.32□□□□□ -0.92
CCDC88A-204ENST00000413716 COX6B2Q6YFQ2 88 aa9.32□□□□□ -0.92
CCDC88A-204ENST00000413716 LINC00310P59036 64 aa9.32□□□□□ -0.92
CCDC88A-204ENST00000413716 C19orf84I3L1E1 186 aa9.31□□□□□ -0.92
CCDC88A-204ENST00000413716 A8MWP4 228 aa9.31□□□□□ -0.92
CCDC88A-204ENST00000413716 Q6ZRX8 168 aa9.31□□□□□ -0.92
CCDC88A-204ENST00000413716 COL4A3Q01955 1670 aa9.3□□□□□ -0.92
CCDC88A-204ENST00000413716 ODF3L2Q3SX64 289 aa9.3□□□□□ -0.92
CCDC88A-204ENST00000413716 LINC00483Q53H64 154 aa9.29□□□□□ -0.92
CCDC88A-204ENST00000413716 IGLV1-51P01701 117 aa9.29□□□□□ -0.92
CCDC88A-204ENST00000413716 USP9YO00507 2555 aaPredicted RBP9.29□□□□□ -0.92
CCDC88A-204ENST00000413716 URB1-AS1Q96HZ7 61 aa9.29□□□□□ -0.92
CCDC88A-204ENST00000413716 RPL37AP61513 92 aaKnown RBP9.27□□□□□ -0.92
CCDC88A-204ENST00000413716 LINC00167Q96N53 147 aa9.27□□□□□ -0.92
CCDC88A-204ENST00000413716 KIF25-AS1Q9Y6Z4 181 aa9.27□□□□□ -0.93
CCDC88A-204ENST00000413716 IGLV5-39A0A0G2JS06 123 aa9.26□□□□□ -0.93
CCDC88A-204ENST00000413716 Q6ZSN1 163 aa9.26□□□□□ -0.93
CCDC88A-204ENST00000413716 PRR15Q8IV56 129 aa9.26□□□□□ -0.93
CCDC88A-204ENST00000413716 TRBV7-4A0A0J9YYF1 115 aa9.26□□□□□ -0.93
CCDC88A-204ENST00000413716 PRO3102Q9H379 93 aa9.25□□□□□ -0.93
CCDC88A-204ENST00000413716 CEP295Q9C0D2 2601 aa9.24□□□□□ -0.93
CCDC88A-204ENST00000413716 Q6ZRP5 223 aa9.24□□□□□ -0.93
CCDC88A-204ENST00000413716 MUC22E2RYF6 1773 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-204ENST00000413716 CHTF8P0CG12 524 aa9.24□□□□□ -0.93
CCDC88A-204ENST00000413716 LINC01546A6NGU7 62 aa9.23□□□□□ -0.93
CCDC88A-204ENST00000413716 IGLV6-57P01721 117 aa9.23□□□□□ -0.93
CCDC88A-204ENST00000413716 COX8CQ7Z4L0 72 aa9.22□□□□□ -0.93
CCDC88A-204ENST00000413716 FASNP49327 2511 aaKnown RBP9.22□□□□□ -0.93
CCDC88A-204ENST00000413716 EP400Q96L91 3159 aa9.22□□□□□ -0.93
CCDC88A-204ENST00000413716 C8orf17Q9NRJ1 99 aa9.22□□□□□ -0.93
CCDC88A-204ENST00000413716 MRPL34Q9BQ48 92 aaKnown RBP9.21□□□□□ -0.93
CCDC88A-204ENST00000413716 FAM218AQ96MZ4 157 aa9.21□□□□□ -0.93
CCDC88A-204ENST00000413716 A0A096LNJ9 63 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 ST20-AS1Q8NBB2 130 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 A0A0A0MQY5 61 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 C16orf90A8MZG2 172 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 K7EQZ3 153 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 A0A0D9SG42 100 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 CRIP3Q6Q6R5 217 aa9.19□□□□□ -0.94
CCDC88A-204ENST00000413716 Q1T7F1 81 aa9.16□□□□□ -0.94
CCDC88A-204ENST00000413716 FHL3Q13643 280 aa9.16□□□□□ -0.94
CCDC88A-204ENST00000413716 IGHV3OR16-9A0A0B4J2B5 98 aa9.16□□□□□ -0.94
CCDC88A-204ENST00000413716 SMCPP49901 116 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-204ENST00000413716 A0A1W2PNU3 283 aaPredicted RBP9.15□□□□□ -0.94
CCDC88A-204ENST00000413716 LINC00336Q6ZUF6 198 aa9.15□□□□□ -0.94
CCDC88A-204ENST00000413716 PHF5AQ7RTV0 110 aaKnown RBP9.15□□□□□ -0.94
CCDC88A-204ENST00000413716 RTL8CO15255 209 aa9.14□□□□□ -0.95
CCDC88A-204ENST00000413716 PRO0461Q9UI25 63 aa9.14□□□□□ -0.95
CCDC88A-204ENST00000413716 KLKP1Q107X0 134 aa9.13□□□□□ -0.95
CCDC88A-204ENST00000413716 SRCAPQ6ZRS2 3230 aa9.13□□□□□ -0.95
CCDC88A-204ENST00000413716 J3QL48 77 aa9.13□□□□□ -0.95
CCDC88A-204ENST00000413716 C16orf95Q9H693 158 aa9.13□□□□□ -0.95
CCDC88A-204ENST00000413716 H3BS24 57 aa9.12□□□□□ -0.95
CCDC88A-204ENST00000413716 RBM12B-AS1Q9P1G2 102 aa9.12□□□□□ -0.95
CCDC88A-204ENST00000413716 IGLV5-45A0A087WSX0 123 aa9.12□□□□□ -0.95
CCDC88A-204ENST00000413716 OBSCN-AS1Q96MR7 158 aa9.11□□□□□ -0.95
CCDC88A-204ENST00000413716 WISP2O76076 250 aa9.1□□□□□ -0.95
CCDC88A-204ENST00000413716 DSCR10P59022 87 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms