RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 NLRC5Q86WI3 1866 aa3.1□□□□□ -1.91
PTPN13-202ENST00000411767 PCNX3Q9H6A9 2034 aa3.1□□□□□ -1.91
PTPN13-202ENST00000411767 SORL1Q92673 2214 aa3.1□□□□□ -1.91
PTPN13-202ENST00000411767 ZNF106Q9H2Y7 1883 aaKnown RBP3.1□□□□□ -1.91
PTPN13-202ENST00000411767 C20orf166-AS1Q96NR2 134 aa3.1□□□□□ -1.91
PTPN13-202ENST00000411767 LINC01558Q9Y6Z2 57 aa3.09□□□□□ -1.91
PTPN13-202ENST00000411767 PLXNA4Q9HCM2 1894 aa3.09□□□□□ -1.91
PTPN13-202ENST00000411767 NOTCH4Q99466 2003 aa3.09□□□□□ -1.92
PTPN13-202ENST00000411767 C15orf56Q8N910 161 aa3.09□□□□□ -1.92
PTPN13-202ENST00000411767 FLVCR1-AS1Q8TAF5 88 aa3.09□□□□□ -1.92
PTPN13-202ENST00000411767 TMEM131Q92545 1883 aa3.09□□□□□ -1.92
PTPN13-202ENST00000411767 KIAA1549Q9HCM3 1950 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 A8MTW9 85 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 ODF3L2Q3SX64 289 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 LINC00574Q9H8X3 128 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 PLXNA2O75051 1894 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 NOTCH3Q9UM47 2321 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 PP632Q6XCG6 107 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 UTRNP46939 3433 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 CACNA1HO95180 2353 aa3.08□□□□□ -1.92
PTPN13-202ENST00000411767 FNDC1Q4ZHG4 1894 aaPredicted RBP3.08□□□□□ -1.92
PTPN13-202ENST00000411767 HELZP42694 1942 aaKnown RBP3.08□□□□□ -1.92
PTPN13-202ENST00000411767 PHF5AQ7RTV0 110 aaKnown RBP3.07□□□□□ -1.92
PTPN13-202ENST00000411767 EXPH5Q8NEV8 1989 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 TICRRQ7Z2Z1 1910 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 LINC01546A6NGU7 62 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 ZCCHC13Q8WW36 166 aaKnown RBP3.07□□□□□ -1.92
PTPN13-202ENST00000411767 ZDBF2Q9HCK1 2354 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 RPL37P61927 97 aaKnown RBP3.07□□□□□ -1.92
PTPN13-202ENST00000411767 PRAC1Q96KF2 57 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 SPTA1P02549 2419 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 CRIP1P50238 77 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 Q8N1X5 172 aa3.07□□□□□ -1.92
PTPN13-202ENST00000411767 COL4A4P53420 1690 aaPredicted RBP3.07□□□□□ -1.92
PTPN13-202ENST00000411767 TCF20Q9UGU0 1960 aaKnown RBP3.06□□□□□ -1.92
PTPN13-202ENST00000411767 CEP290O15078 2479 aa3.06□□□□□ -1.92
PTPN13-202ENST00000411767 Q6ZR54 194 aa3.06□□□□□ -1.92
PTPN13-202ENST00000411767 PRR26Q8N8Z3 221 aa3.06□□□□□ -1.92
PTPN13-202ENST00000411767 Q8NA96 180 aa3.06□□□□□ -1.92
PTPN13-202ENST00000411767 FHL3Q13643 280 aa3.06□□□□□ -1.92
PTPN13-202ENST00000411767 CACNA1GO43497 2377 aa3.06□□□□□ -1.92
PTPN13-202ENST00000411767 GVQW2A0A096LPI5 108 aaPredicted RBP3.05□□□□□ -1.92
PTPN13-202ENST00000411767 ZNF580Q9UK33 172 aa3.05□□□□□ -1.92
PTPN13-202ENST00000411767 PCDH15Q96QU1 1955 aa3.05□□□□□ -1.92
PTPN13-202ENST00000411767 PTPRQQ9UMZ3 2332 aa3.05□□□□□ -1.92
PTPN13-202ENST00000411767 NBDYA0A0U1RRE5 68 aa3.05□□□□□ -1.92
PTPN13-202ENST00000411767 IGLV1-51P01701 117 aa3.05□□□□□ -1.92
PTPN13-202ENST00000411767 ATG2AQ2TAZ0 1938 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 ZNF861PO60384 105 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 SPRNQ5BIV9 151 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 FAM186AA6NE01 2351 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 IGLV1-40P01703 118 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 PLXNA3P51805 1871 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 CUL9Q8IWT3 2517 aa3.04□□□□□ -1.92
PTPN13-202ENST00000411767 LINC00315P59091 139 aa3.03□□□□□ -1.92
PTPN13-202ENST00000411767 C16orf95Q9H693 158 aa3.03□□□□□ -1.92
PTPN13-202ENST00000411767 Q6ZSN1 163 aa3.03□□□□□ -1.92
PTPN13-202ENST00000411767 C19orf73Q9NVV2 129 aa3.03□□□□□ -1.92
PTPN13-202ENST00000411767 IGFL1Q6UW32 110 aa3.03□□□□□ -1.92
PTPN13-202ENST00000411767 BRI3O95415 125 aa3.03□□□□□ -1.93
PTPN13-202ENST00000411767 Q8N377 158 aa3.03□□□□□ -1.93
PTPN13-202ENST00000411767 ANAPC1Q9H1A4 1944 aa3.02□□□□□ -1.93
PTPN13-202ENST00000411767 LMO4P61968 165 aa3.02□□□□□ -1.93
PTPN13-202ENST00000411767 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.02□□□□□ -1.93
PTPN13-202ENST00000411767 CEP192Q8TEP8 1941 aa3.02□□□□□ -1.93
PTPN13-202ENST00000411767 SRCAPQ6ZRS2 3230 aa3.02□□□□□ -1.93
PTPN13-202ENST00000411767 SPTAN1Q13813 2472 aaKnown RBP3.02□□□□□ -1.93
PTPN13-202ENST00000411767 TANC1Q9C0D5 1861 aa3.02□□□□□ -1.93
PTPN13-202ENST00000411767 PLXNB3Q9ULL4 1909 aa3.02□□□□□ -1.93
PTPN13-202ENST00000411767 WWC2-AS2Q96NR7 200 aa3.01□□□□□ -1.93
PTPN13-202ENST00000411767 TECTAO75443 2155 aa3.01□□□□□ -1.93
PTPN13-202ENST00000411767 CACNA1EQ15878 2313 aa3.01□□□□□ -1.93
PTPN13-202ENST00000411767 ACACAQ13085 2346 aa3.01□□□□□ -1.93
PTPN13-202ENST00000411767 FAM229BQ4G0N7 80 aa3.01□□□□□ -1.93
PTPN13-202ENST00000411767 KCNQ1DNQ9H478 68 aa3.01□□□□□ -1.93
PTPN13-202ENST00000411767 DNAH12Q6ZR08 3092 aa3□□□□□ -1.93
PTPN13-202ENST00000411767 MED13LQ71F56 2210 aa3□□□□□ -1.93
PTPN13-202ENST00000411767 C2orf16Q68DN1 1984 aa3□□□□□ -1.93
PTPN13-202ENST00000411767 C11orf21Q9P2W6 132 aa3□□□□□ -1.93
PTPN13-202ENST00000411767 KIAA1671Q9BY89 1806 aa3□□□□□ -1.93
PTPN13-202ENST00000411767 PCNTO95613 3336 aa2.99□□□□□ -1.93
PTPN13-202ENST00000411767 NBASA2RRP1 2371 aa2.99□□□□□ -1.93
PTPN13-202ENST00000411767 PTPRBP23467 1997 aa2.99□□□□□ -1.93
PTPN13-202ENST00000411767 CNOT1A5YKK6 2376 aaKnown RBP2.99□□□□□ -1.93
PTPN13-202ENST00000411767 M0QZ58 72 aa2.99□□□□□ -1.93
PTPN13-202ENST00000411767 THSD7BQ9C0I4 1608 aa2.99□□□□□ -1.93
PTPN13-202ENST00000411767 FAM218AQ96MZ4 157 aa2.98□□□□□ -1.93
PTPN13-202ENST00000411767 PTPRSQ13332 1948 aa2.98□□□□□ -1.93
PTPN13-202ENST00000411767 FAM168BA1KXE4 195 aa2.98□□□□□ -1.93
PTPN13-202ENST00000411767 CEP350Q5VT06 3117 aa2.98□□□□□ -1.93
PTPN13-202ENST00000411767 NUP210Q8TEM1 1887 aaPredicted RBP2.98□□□□□ -1.93
PTPN13-202ENST00000411767 USF3Q68DE3 2245 aa2.98□□□□□ -1.93
PTPN13-202ENST00000411767 CSPG4Q6UVK1 2322 aa2.98□□□□□ -1.93
PTPN13-202ENST00000411767 CENPFP49454 3210 aa2.97□□□□□ -1.93
PTPN13-202ENST00000411767 PCNX1Q96RV3 2341 aa2.97□□□□□ -1.93
PTPN13-202ENST00000411767 HTTP42858 3142 aa2.97□□□□□ -1.93
PTPN13-202ENST00000411767 COL4A6Q14031 1691 aa2.96□□□□□ -1.94
PTPN13-202ENST00000411767 DNAH10OSP0CZ25 163 aa2.96□□□□□ -1.94
PTPN13-202ENST00000411767 LTBP2Q14767 1821 aa2.95□□□□□ -1.94
PTPN13-202ENST00000411767 SMCPP49901 116 aaPredicted RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms