RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 IGLV5-52A0A0A0MRZ9 124 aa9.25□□□□□ -0.93
SKA1-202ENST00000398452 IFITM1P13164 125 aa9.25□□□□□ -0.93
SKA1-202ENST00000398452 SPANXDQ9BXN6 97 aa9.25□□□□□ -0.93
SKA1-202ENST00000398452 SPANXCQ9NY87 97 aa9.25□□□□□ -0.93
SKA1-202ENST00000398452 M0R143 59 aa9.24□□□□□ -0.93
SKA1-202ENST00000398452 DAND5Q8N907 189 aa9.24□□□□□ -0.93
SKA1-202ENST00000398452 SLPIP03973 132 aa9.23□□□□□ -0.93
SKA1-202ENST00000398452 PTTG1IPP53801 180 aa9.23□□□□□ -0.93
SKA1-202ENST00000398452 NPC2P61916 151 aa9.23□□□□□ -0.93
SKA1-202ENST00000398452 RPL24P83731 157 aaKnown RBP9.23□□□□□ -0.93
SKA1-202ENST00000398452 GAGE2EQ4V326 116 aa9.23□□□□□ -0.93
SKA1-202ENST00000398452 GAGE2DQ9UEU5 116 aa9.23□□□□□ -0.93
SKA1-202ENST00000398452 TLX1NBP0CAT3 122 aa9.22□□□□□ -0.93
SKA1-202ENST00000398452 GAGE2BQ13066 116 aa9.22□□□□□ -0.93
SKA1-202ENST00000398452 ADAMTSL4-AS1Q5T5F5 129 aa9.22□□□□□ -0.93
SKA1-202ENST00000398452 C9orf163Q8N9P6 203 aa9.22□□□□□ -0.93
SKA1-202ENST00000398452 LITAFQ99732 161 aa9.22□□□□□ -0.93
SKA1-202ENST00000398452 CEND1Q8N111 149 aa9.21□□□□□ -0.94
SKA1-202ENST00000398452 LINC00308Q8TCZ7 52 aa9.21□□□□□ -0.94
SKA1-202ENST00000398452 MUSTN1Q8IVN3 82 aa9.2□□□□□ -0.94
SKA1-202ENST00000398452 SND1-IT1Q9HBX3 110 aa9.2□□□□□ -0.94
SKA1-202ENST00000398452 DPH3Q96FX2 82 aa9.19□□□□□ -0.94
SKA1-202ENST00000398452 LINC00474Q9P2X8 69 aa9.19□□□□□ -0.94
SKA1-202ENST00000398452 HINT1P49773 126 aaPredicted RBP9.18□□□□□ -0.94
SKA1-202ENST00000398452 LCE1DQ5T752 114 aa9.18□□□□□ -0.94
SKA1-202ENST00000398452 Q6ZRP5 223 aa9.18□□□□□ -0.94
SKA1-202ENST00000398452 XAGE1AQ9HD64 81 aa9.18□□□□□ -0.94
SKA1-202ENST00000398452 IGKV2-24A0A0C4DH68 120 aa9.17□□□□□ -0.94
SKA1-202ENST00000398452 C16orf90A8MZG2 172 aa9.17□□□□□ -0.94
SKA1-202ENST00000398452 BATFQ16520 125 aa9.17□□□□□ -0.94
SKA1-202ENST00000398452 PPDPFQ9H3Y8 114 aa9.17□□□□□ -0.94
SKA1-202ENST00000398452 A0A1B0GVY2 172 aa9.15□□□□□ -0.94
SKA1-202ENST00000398452 A6NDN8 102 aa9.15□□□□□ -0.94
SKA1-202ENST00000398452 A4D1N5 150 aa9.14□□□□□ -0.95
SKA1-202ENST00000398452 BVES-AS1Q5T3Y7 98 aa9.14□□□□□ -0.95
SKA1-202ENST00000398452 NKAPP1Q8N9T2 125 aa9.14□□□□□ -0.95
SKA1-202ENST00000398452 RAB37Q96AX2 223 aa9.14□□□□□ -0.95
SKA1-202ENST00000398452 HECTD4Q9Y4D8 3996 aa9.14□□□□□ -0.95
SKA1-202ENST00000398452 A0A096LNI7 61 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 LOC107984156A0A0G2JMH3 177 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 NDUFC2O95298 119 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 LINC01620Q4KN68 170 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 SOSTDC1Q6X4U4 206 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 SDIM1Q6ZPB5 146 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 ARL17AQ8IVW1 177 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 HERC2O95714 4834 aa9.13□□□□□ -0.95
SKA1-202ENST00000398452 FUSP35637 526 aaKnown RBP eCLIP9.12□□□□□ -0.95
SKA1-202ENST00000398452 FXYD2P54710 66 aa9.12□□□□□ -0.95
SKA1-202ENST00000398452 NHP2Q9NX24 153 aaKnown RBP9.12□□□□□ -0.95
SKA1-202ENST00000398452 KRTAP10-2P60368 255 aa9.11□□□□□ -0.95
SKA1-202ENST00000398452 C9orf129Q5T035 196 aaKnown RBP9.11□□□□□ -0.95
SKA1-202ENST00000398452 TRAV13-2A0A0B4J235 113 aa9.1□□□□□ -0.95
SKA1-202ENST00000398452 S100A7L2Q5SY68 101 aa9.1□□□□□ -0.95
SKA1-202ENST00000398452 OR13C6PQ8NH95 151 aa9.1□□□□□ -0.95
SKA1-202ENST00000398452 KRTAP4-7Q9BYR0 210 aa9.1□□□□□ -0.95
SKA1-202ENST00000398452 KIAA1109Q2LD37 5005 aa9.09□□□□□ -0.95
SKA1-202ENST00000398452 NCR3O14931 201 aa9.09□□□□□ -0.95
SKA1-202ENST00000398452 FAM19A5Q7Z5A7 132 aaPredicted RBP9.09□□□□□ -0.95
SKA1-202ENST00000398452 PLA2G2DQ9UNK4 145 aa9.09□□□□□ -0.95
SKA1-202ENST00000398452 CBY1Q9Y3M2 126 aa9.09□□□□□ -0.95
SKA1-202ENST00000398452 A0A0B4J2C4 111 aa9.08□□□□□ -0.96
SKA1-202ENST00000398452 TRBV10-2A0A0K0K1G8 114 aa9.08□□□□□ -0.96
SKA1-202ENST00000398452 CHTF8P0CG12 524 aa9.08□□□□□ -0.96
SKA1-202ENST00000398452 DNAH2Q9P225 4427 aa9.08□□□□□ -0.96
SKA1-202ENST00000398452 M0R378 163 aa9.07□□□□□ -0.96
SKA1-202ENST00000398452 Q1RN00 199 aa9.07□□□□□ -0.96
SKA1-202ENST00000398452 LBHQ53QV2 105 aaPredicted RBP9.07□□□□□ -0.96
SKA1-202ENST00000398452 PRO1854Q9UHT4 67 aa9.07□□□□□ -0.96
SKA1-202ENST00000398452 FAT2Q9NYQ8 4349 aa9.07□□□□□ -0.96
SKA1-202ENST00000398452 CFC1BP0CG36 223 aa9.06□□□□□ -0.96
SKA1-202ENST00000398452 CFC1P0CG37 223 aa9.06□□□□□ -0.96
SKA1-202ENST00000398452 VPREB1P12018 145 aa9.06□□□□□ -0.96
SKA1-202ENST00000398452 TMEM126AQ9H061 195 aa9.06□□□□□ -0.96
SKA1-202ENST00000398452 DNAH17Q9UFH2 4485 aa9.05□□□□□ -0.96
SKA1-202ENST00000398452 M0QXV9 152 aa9.05□□□□□ -0.96
SKA1-202ENST00000398452 COL5A1-AS1Q5SY13 56 aa9.05□□□□□ -0.96
SKA1-202ENST00000398452 SPACA4Q8TDM5 124 aa9.05□□□□□ -0.96
SKA1-202ENST00000398452 SNHG12Q9BXW3 62 aa9.05□□□□□ -0.96
SKA1-202ENST00000398452 PKHD1P08F94 4074 aa9.04□□□□□ -0.96
SKA1-202ENST00000398452 FAM168BA1KXE4 195 aa9.04□□□□□ -0.96
SKA1-202ENST00000398452 RPL13AP40429 203 aaKnown RBP9.04□□□□□ -0.96
SKA1-202ENST00000398452 SERTAD4-AS1Q5TG53 156 aa9.04□□□□□ -0.96
SKA1-202ENST00000398452 C22orf24Q9Y442 160 aa9.04□□□□□ -0.96
SKA1-202ENST00000398452 IGLV5-37A0A075B6J1 123 aa9.03□□□□□ -0.96
SKA1-202ENST00000398452 H7C2G1 150 aa9.03□□□□□ -0.96
SKA1-202ENST00000398452 K7ERJ3 54 aa9.03□□□□□ -0.96
SKA1-202ENST00000398452 UBE2BP63146 152 aa9.03□□□□□ -0.96
SKA1-202ENST00000398452 PRR3P79522 188 aaKnown RBP9.03□□□□□ -0.96
SKA1-202ENST00000398452 MRPL55Q7Z7F7 128 aaKnown RBP9.03□□□□□ -0.96
SKA1-202ENST00000398452 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.03□□□□□ -0.96
SKA1-202ENST00000398452 IGKV2-28A0A075B6P5 120 aa9.02□□□□□ -0.97
SKA1-202ENST00000398452 A0A087WYN8 130 aa9.02□□□□□ -0.97
SKA1-202ENST00000398452 A0A1B0GWB2 263 aa9.02□□□□□ -0.97
SKA1-202ENST00000398452 GAGE10A6NGK3 116 aa9.02□□□□□ -0.97
SKA1-202ENST00000398452 IGKV2D-28P01615 120 aa9.02□□□□□ -0.97
SKA1-202ENST00000398452 LINC00337Q8N6G1 96 aa9.02□□□□□ -0.97
SKA1-202ENST00000398452 A0A1W2PNN7 141 aa9.01□□□□□ -0.97
SKA1-202ENST00000398452 PSMB2P49721 201 aa9.01□□□□□ -0.97
SKA1-202ENST00000398452 KRTAP10-1P60331 282 aa9.01□□□□□ -0.97
SKA1-202ENST00000398452 C7orf33Q8WU49 177 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms