RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 TMEM254Q8TBM7 123 aa5.03□□□□□ -1.6
UPF2-203ENST00000397053 Q6ZSN1 163 aa5.03□□□□□ -1.6
UPF2-203ENST00000397053 ADAMTSL4-AS1Q5T5F5 129 aa5.02□□□□□ -1.61
UPF2-203ENST00000397053 CCDC179H3BU77 68 aa5.02□□□□□ -1.61
UPF2-203ENST00000397053 KIAA0087Q14695 138 aa5.02□□□□□ -1.61
UPF2-203ENST00000397053 SETXQ7Z333 2677 aaKnown RBP5.02□□□□□ -1.61
UPF2-203ENST00000397053 TP53AIP1Q9HCN2 124 aa5.02□□□□□ -1.61
UPF2-203ENST00000397053 ANKRD17O75179 2603 aaKnown RBP5.02□□□□□ -1.61
UPF2-203ENST00000397053 LINC00313P59037 77 aa5.01□□□□□ -1.61
UPF2-203ENST00000397053 TSPEAR-AS2P59090 65 aa5.01□□□□□ -1.61
UPF2-203ENST00000397053 PHF5AQ7RTV0 110 aaKnown RBP5□□□□□ -1.61
UPF2-203ENST00000397053 Q8NBF4 154 aa5□□□□□ -1.61
UPF2-203ENST00000397053 Q9UF83 564 aa5□□□□□ -1.61
UPF2-203ENST00000397053 RPL37AP61513 92 aaKnown RBP4.99□□□□□ -1.61
UPF2-203ENST00000397053 CHTF8P0CG12 524 aa4.99□□□□□ -1.61
UPF2-203ENST00000397053 Q96NJ1 140 aa4.99□□□□□ -1.61
UPF2-203ENST00000397053 C6orf48Q9UBA6 75 aa4.98□□□□□ -1.61
UPF2-203ENST00000397053 H3BNG1 76 aa4.98□□□□□ -1.61
UPF2-203ENST00000397053 IGHV3OR16-9A0A0B4J2B5 98 aa4.97□□□□□ -1.61
UPF2-203ENST00000397053 LINC00846Q9NV44 126 aa4.97□□□□□ -1.61
UPF2-203ENST00000397053 SPAG11AQ6PDA7 123 aa4.97□□□□□ -1.61
UPF2-203ENST00000397053 IGLV8-61A0A075B6I0 122 aa4.96□□□□□ -1.61
UPF2-203ENST00000397053 EPM2AB3EWF7 344 aa4.96□□□□□ -1.62
UPF2-203ENST00000397053 SMIM29Q86T20 159 aa4.96□□□□□ -1.62
UPF2-203ENST00000397053 SERTAD4-AS1Q5TG53 156 aa4.96□□□□□ -1.62
UPF2-203ENST00000397053 ZNF106Q9H2Y7 1883 aaKnown RBP4.96□□□□□ -1.62
UPF2-203ENST00000397053 COL4A3Q01955 1670 aa4.95□□□□□ -1.62
UPF2-203ENST00000397053 C11orf72Q8NBR9 251 aa4.95□□□□□ -1.62
UPF2-203ENST00000397053 CXCL6P80162 114 aa4.95□□□□□ -1.62
UPF2-203ENST00000397053 SPATA3Q8NHX4 192 aa4.95□□□□□ -1.62
UPF2-203ENST00000397053 ATG2AQ2TAZ0 1938 aa4.95□□□□□ -1.62
UPF2-203ENST00000397053 LINC00588Q9Y4M8 146 aa4.95□□□□□ -1.62
UPF2-203ENST00000397053 LINC00476Q8WZB0 136 aa4.94□□□□□ -1.62
UPF2-203ENST00000397053 COX8CQ7Z4L0 72 aa4.94□□□□□ -1.62
UPF2-203ENST00000397053 TRAV22A0A0B4J277 110 aa4.93□□□□□ -1.62
UPF2-203ENST00000397053 BCE1O60756 84 aa4.93□□□□□ -1.62
UPF2-203ENST00000397053 Q6ZRX8 168 aa4.93□□□□□ -1.62
UPF2-203ENST00000397053 A0A1B0GW54 56 aa4.92□□□□□ -1.62
UPF2-203ENST00000397053 URB1-AS1Q96HZ7 61 aa4.92□□□□□ -1.62
UPF2-203ENST00000397053 IGLV5-39A0A0G2JS06 123 aa4.92□□□□□ -1.62
UPF2-203ENST00000397053 SPINT4Q6UDR6 99 aa4.92□□□□□ -1.62
UPF2-203ENST00000397053 RAI1Q7Z5J4 1906 aaPredicted RBP4.92□□□□□ -1.62
UPF2-203ENST00000397053 ST20-AS1Q8NBB2 130 aa4.91□□□□□ -1.62
UPF2-203ENST00000397053 SMR3BP02814 79 aaPredicted RBP4.91□□□□□ -1.62
UPF2-203ENST00000397053 BAHCC1Q9P281 2608 aa4.91□□□□□ -1.62
UPF2-203ENST00000397053 C8orf87E5RJ46 101 aa4.9□□□□□ -1.62
UPF2-203ENST00000397053 LINC00304Q8N9R0 145 aa4.9□□□□□ -1.62
UPF2-203ENST00000397053 YPEL4Q96NS1 127 aa4.9□□□□□ -1.62
UPF2-203ENST00000397053 H3BPC8 53 aa4.9□□□□□ -1.63
UPF2-203ENST00000397053 LINC01600Q96MT4 127 aa4.9□□□□□ -1.63
UPF2-203ENST00000397053 ELOF1P60002 83 aaKnown RBP4.89□□□□□ -1.63
UPF2-203ENST00000397053 PTPRSQ13332 1948 aa4.89□□□□□ -1.63
UPF2-203ENST00000397053 Q8NAQ8 132 aa4.89□□□□□ -1.63
UPF2-203ENST00000397053 LOC101927531A0A1B0GV80 90 aa4.89□□□□□ -1.63
UPF2-203ENST00000397053 APLNQ9ULZ1 77 aa4.89□□□□□ -1.63
UPF2-203ENST00000397053 SSBP3-AS1Q7Z2R9 100 aa4.89□□□□□ -1.63
UPF2-203ENST00000397053 IGLV5-37A0A075B6J1 123 aa4.88□□□□□ -1.63
UPF2-203ENST00000397053 A0A096LNJ9 63 aa4.88□□□□□ -1.63
UPF2-203ENST00000397053 EML5Q05BV3 1969 aa4.88□□□□□ -1.63
UPF2-203ENST00000397053 DMBT1Q9UGM3 2413 aaPredicted RBP4.88□□□□□ -1.63
UPF2-203ENST00000397053 RBM12B-AS1Q9P1G2 102 aa4.87□□□□□ -1.63
UPF2-203ENST00000397053 GVQW2A0A096LPI5 108 aaPredicted RBP4.87□□□□□ -1.63
UPF2-203ENST00000397053 LINC00310P59036 64 aa4.87□□□□□ -1.63
UPF2-203ENST00000397053 CRIPTQ9P021 101 aa4.87□□□□□ -1.63
UPF2-203ENST00000397053 DNAH10OSP0CZ25 163 aa4.87□□□□□ -1.63
UPF2-203ENST00000397053 IGLV6-57P01721 117 aa4.87□□□□□ -1.63
UPF2-203ENST00000397053 LINC01554Q52M75 96 aa4.87□□□□□ -1.63
UPF2-203ENST00000397053 NUP210LQ5VU65 1888 aa4.86□□□□□ -1.63
UPF2-203ENST00000397053 C9orf92A6NGG3 77 aa4.86□□□□□ -1.63
UPF2-203ENST00000397053 MRPL34Q9BQ48 92 aaKnown RBP4.86□□□□□ -1.63
UPF2-203ENST00000397053 ADAMTS20P59510 1910 aa4.86□□□□□ -1.63
UPF2-203ENST00000397053 CEP192Q8TEP8 1941 aa4.86□□□□□ -1.63
UPF2-203ENST00000397053 LTBP2Q14767 1821 aa4.86□□□□□ -1.63
UPF2-203ENST00000397053 FAM19A4Q96LR4 140 aa4.85□□□□□ -1.63
UPF2-203ENST00000397053 LINC00336Q6ZUF6 198 aa4.85□□□□□ -1.63
UPF2-203ENST00000397053 K7EIL1 84 aa4.85□□□□□ -1.63
UPF2-203ENST00000397053 ITPR3Q14573 2671 aa4.85□□□□□ -1.63
UPF2-203ENST00000397053 OBSCN-AS1Q96MR7 158 aa4.84□□□□□ -1.63
UPF2-203ENST00000397053 NOTCH1P46531 2555 aa4.84□□□□□ -1.63
UPF2-203ENST00000397053 TM2D3Q9BRN9 247 aa4.84□□□□□ -1.64
UPF2-203ENST00000397053 TRBV7-4A0A0J9YYF1 115 aa4.83□□□□□ -1.64
UPF2-203ENST00000397053 C10orf142B7Z368 130 aa4.83□□□□□ -1.64
UPF2-203ENST00000397053 A8MWP4 228 aa4.83□□□□□ -1.64
UPF2-203ENST00000397053 ZNF861PO60384 105 aa4.83□□□□□ -1.64
UPF2-203ENST00000397053 IGLV5-45A0A087WSX0 123 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 C9orf129Q5T035 196 aaKnown RBP4.82□□□□□ -1.64
UPF2-203ENST00000397053 BPTFQ12830 3046 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 DSCR10P59022 87 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 M0R2T5 61 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 STAB2Q8WWQ8 2551 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 HELZ2Q9BYK8 2649 aaKnown RBP4.82□□□□□ -1.64
UPF2-203ENST00000397053 UQCR11O14957 56 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 A0A087WTM6 91 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 FAM168BA1KXE4 195 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 Q6ZQT0 140 aa4.82□□□□□ -1.64
UPF2-203ENST00000397053 VPREB1P12018 145 aa4.81□□□□□ -1.64
UPF2-203ENST00000397053 K7EQZ3 153 aa4.8□□□□□ -1.64
UPF2-203ENST00000397053 FAM218AQ96MZ4 157 aa4.8□□□□□ -1.64
UPF2-203ENST00000397053 TEP1Q99973 2627 aaKnown RBP4.8□□□□□ -1.64
UPF2-203ENST00000397053 COL4A4P53420 1690 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms