RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 Q6ZRP5 223 aa13.19□□□□□ -0.3
HDDC3-202ENST00000394272 A0A1W2PPM0 123 aa13.19□□□□□ -0.3
HDDC3-202ENST00000394272 CNBPP62633 177 aaKnown RBP13.19□□□□□ -0.3
HDDC3-202ENST00000394272 LINC00337Q8N6G1 96 aa13.18□□□□□ -0.3
HDDC3-202ENST00000394272 Q8NDZ9 215 aa13.18□□□□□ -0.3
HDDC3-202ENST00000394272 XAGE1AQ9HD64 81 aa13.18□□□□□ -0.3
HDDC3-202ENST00000394272 SACSQ9NZJ4 4579 aa13.18□□□□□ -0.3
HDDC3-202ENST00000394272 HYDINQ4G0P3 5121 aa13.18□□□□□ -0.3
HDDC3-202ENST00000394272 RPL13AP40429 203 aaKnown RBP13.17□□□□□ -0.3
HDDC3-202ENST00000394272 TRAV13-2A0A0B4J235 113 aa13.16□□□□□ -0.3
HDDC3-202ENST00000394272 H7C2G1 150 aa13.16□□□□□ -0.3
HDDC3-202ENST00000394272 GAGE2EQ4V326 116 aa13.15□□□□□ -0.3
HDDC3-202ENST00000394272 GAGE2DQ9UEU5 116 aa13.15□□□□□ -0.3
HDDC3-202ENST00000394272 C1orf134Q5TEV5 83 aa13.14□□□□□ -0.31
HDDC3-202ENST00000394272 VAMP3Q15836 100 aa13.14□□□□□ -0.31
HDDC3-202ENST00000394272 FRAS1Q86XX4 4008 aa13.14□□□□□ -0.31
HDDC3-202ENST00000394272 FABP2P12104 132 aa13.13□□□□□ -0.31
HDDC3-202ENST00000394272 PRR3P79522 188 aaKnown RBP13.13□□□□□ -0.31
HDDC3-202ENST00000394272 Q1RN00 199 aa13.13□□□□□ -0.31
HDDC3-202ENST00000394272 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.12□□□□□ -0.31
HDDC3-202ENST00000394272 RPL18AQ02543 176 aaKnown RBP13.12□□□□□ -0.31
HDDC3-202ENST00000394272 A0A087WTM6 91 aa13.12□□□□□ -0.31
HDDC3-202ENST00000394272 C9orf129Q5T035 196 aaKnown RBP13.12□□□□□ -0.31
HDDC3-202ENST00000394272 Q8N814 137 aa13.12□□□□□ -0.31
HDDC3-202ENST00000394272 HECTD4Q9Y4D8 3996 aa13.1□□□□□ -0.31
HDDC3-202ENST00000394272 LOC107984640A0A0U1RRK4 108 aa13.1□□□□□ -0.31
HDDC3-202ENST00000394272 UBE2V1Q13404 147 aa13.09□□□□□ -0.31
HDDC3-202ENST00000394272 TRIAP1O43715 76 aa13.08□□□□□ -0.32
HDDC3-202ENST00000394272 VPREB1P12018 145 aa13.08□□□□□ -0.32
HDDC3-202ENST00000394272 SPCS1Q9Y6A9 102 aa13.08□□□□□ -0.32
HDDC3-202ENST00000394272 TRBV10-2A0A0K0K1G8 114 aa13.08□□□□□ -0.32
HDDC3-202ENST00000394272 NCR3O14931 201 aa13.08□□□□□ -0.32
HDDC3-202ENST00000394272 PSMB2P49721 201 aa13.08□□□□□ -0.32
HDDC3-202ENST00000394272 K7EP34 96 aa13.06□□□□□ -0.32
HDDC3-202ENST00000394272 C9orf163Q8N9P6 203 aa13.06□□□□□ -0.32
HDDC3-202ENST00000394272 OR13C6PQ8NH95 151 aa13.06□□□□□ -0.32
HDDC3-202ENST00000394272 GAGE2BQ13066 116 aa13.06□□□□□ -0.32
HDDC3-202ENST00000394272 GAGE10A6NGK3 116 aa13.05□□□□□ -0.32
HDDC3-202ENST00000394272 LYRM7Q5U5X0 104 aa13.05□□□□□ -0.32
HDDC3-202ENST00000394272 RPL28P46779 137 aaKnown RBP13.04□□□□□ -0.32
HDDC3-202ENST00000394272 TMEM126AQ9H061 195 aa13.04□□□□□ -0.32
HDDC3-202ENST00000394272 PLA2G2DQ9UNK4 145 aa13.04□□□□□ -0.32
HDDC3-202ENST00000394272 SCGB1C2P0DMR2 95 aa13.04□□□□□ -0.32
HDDC3-202ENST00000394272 SMIM11BQ8TCY0 68 aa13.04□□□□□ -0.32
HDDC3-202ENST00000394272 DNAH11Q96DT5 4516 aa13.03□□□□□ -0.32
HDDC3-202ENST00000394272 GTF2H5Q6ZYL4 71 aa13.03□□□□□ -0.32
HDDC3-202ENST00000394272 FAT2Q9NYQ8 4349 aa13.02□□□□□ -0.32
HDDC3-202ENST00000394272 C16orf90A8MZG2 172 aa13.02□□□□□ -0.32
HDDC3-202ENST00000394272 SERTAD4-AS1Q5TG53 156 aa13.02□□□□□ -0.32
HDDC3-202ENST00000394272 IGLV6-57P01721 117 aa13.02□□□□□ -0.33
HDDC3-202ENST00000394272 A0A096LNI7 61 aa13.01□□□□□ -0.33
HDDC3-202ENST00000394272 RTL8CO15255 209 aa13.01□□□□□ -0.33
HDDC3-202ENST00000394272 COX6CP09669 75 aa13.01□□□□□ -0.33
HDDC3-202ENST00000394272 S100A7L2Q5SY68 101 aa13.01□□□□□ -0.33
HDDC3-202ENST00000394272 TCL1BO95988 128 aa13□□□□□ -0.33
HDDC3-202ENST00000394272 M0R378 163 aa12.99□□□□□ -0.33
HDDC3-202ENST00000394272 TRBV20-1A0A075B6N2 111 aa12.99□□□□□ -0.33
HDDC3-202ENST00000394272 FAM168BA1KXE4 195 aa12.99□□□□□ -0.33
HDDC3-202ENST00000394272 TNP2Q05952 138 aa12.99□□□□□ -0.33
HDDC3-202ENST00000394272 KRTAP7-1Q8IUC3 87 aa12.99□□□□□ -0.33
HDDC3-202ENST00000394272 IGLV5-37A0A075B6J1 123 aa12.98□□□□□ -0.33
HDDC3-202ENST00000394272 SDIM1Q6ZPB5 146 aa12.98□□□□□ -0.33
HDDC3-202ENST00000394272 TRBV10-3A0A0K0K1G6 114 aa12.97□□□□□ -0.33
HDDC3-202ENST00000394272 LCE6AA0A183 80 aa12.97□□□□□ -0.33
HDDC3-202ENST00000394272 LINC01620Q4KN68 170 aa12.97□□□□□ -0.33
HDDC3-202ENST00000394272 PKIGQ9Y2B9 76 aa12.97□□□□□ -0.33
HDDC3-202ENST00000394272 DNAH5Q8TE73 4624 aa12.97□□□□□ -0.33
HDDC3-202ENST00000394272 IGKV2-24A0A0C4DH68 120 aa12.96□□□□□ -0.33
HDDC3-202ENST00000394272 H3BMG7 143 aa12.96□□□□□ -0.33
HDDC3-202ENST00000394272 NKAPP1Q8N9T2 125 aa12.95□□□□□ -0.34
HDDC3-202ENST00000394272 CLEC2BQ92478 149 aa12.95□□□□□ -0.34
HDDC3-202ENST00000394272 FUSP35637 526 aaKnown RBP eCLIP12.93□□□□□ -0.34
HDDC3-202ENST00000394272 C7orf33Q8WU49 177 aa12.93□□□□□ -0.34
HDDC3-202ENST00000394272 CHTF8P0CG12 524 aa12.92□□□□□ -0.34
HDDC3-202ENST00000394272 ATXN8Q156A1 80 aa12.92□□□□□ -0.34
HDDC3-202ENST00000394272 FAM19A5Q7Z5A7 132 aaPredicted RBP12.92□□□□□ -0.34
HDDC3-202ENST00000394272 C22orf24Q9Y442 160 aa12.92□□□□□ -0.34
HDDC3-202ENST00000394272 LST1O00453 97 aa12.91□□□□□ -0.34
HDDC3-202ENST00000394272 TRAV23DV6A0A075B6W5 121 aa12.91□□□□□ -0.34
HDDC3-202ENST00000394272 A0A1W2PNN7 141 aa12.91□□□□□ -0.34
HDDC3-202ENST00000394272 C6orf99Q4VX62 202 aa12.9□□□□□ -0.34
HDDC3-202ENST00000394272 PKD1P98161 4303 aa12.89□□□□□ -0.35
HDDC3-202ENST00000394272 H0YGX0 51 aa12.89□□□□□ -0.35
HDDC3-202ENST00000394272 FAM218AQ96MZ4 157 aa12.89□□□□□ -0.35
HDDC3-202ENST00000394272 LINC00474Q9P2X8 69 aa12.89□□□□□ -0.35
HDDC3-202ENST00000394272 KMT2CQ8NEZ4 4911 aaKnown RBP12.89□□□□□ -0.35
HDDC3-202ENST00000394272 IGLV5-52A0A0A0MRZ9 124 aa12.89□□□□□ -0.35
HDDC3-202ENST00000394272 MRPL55Q7Z7F7 128 aaKnown RBP12.88□□□□□ -0.35
HDDC3-202ENST00000394272 PANO1I0J062 215 aa12.87□□□□□ -0.35
HDDC3-202ENST00000394272 PRO0461Q9UI25 63 aa12.87□□□□□ -0.35
HDDC3-202ENST00000394272 LINC00167Q96N53 147 aa12.87□□□□□ -0.35
HDDC3-202ENST00000394272 CBY1Q9Y3M2 126 aa12.87□□□□□ -0.35
HDDC3-202ENST00000394272 RYR2Q92736 4967 aa12.86□□□□□ -0.35
HDDC3-202ENST00000394272 ZNF73O43830 326 aaPredicted RBP12.86□□□□□ -0.35
HDDC3-202ENST00000394272 KCNQ1DNQ9H478 68 aa12.86□□□□□ -0.35
HDDC3-202ENST00000394272 IGLV1-50A0A075B6I6 118 aa12.85□□□□□ -0.35
HDDC3-202ENST00000394272 DNAH8Q96JB1 4490 aa12.85□□□□□ -0.35
HDDC3-202ENST00000394272 M0QXV9 152 aa12.85□□□□□ -0.35
HDDC3-202ENST00000394272 MTURNQ8N3F0 131 aa12.85□□□□□ -0.35
HDDC3-202ENST00000394272 SPACA4Q8TDM5 124 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms