RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 TRAV13-2A0A0B4J235 113 aa13.22□□□□□ -0.29
CCDC50-202ENST00000392456 TRBV10-3A0A0K0K1G6 114 aa13.22□□□□□ -0.29
CCDC50-202ENST00000392456 IBA57-AS1B1ANH7 110 aa13.2□□□□□ -0.3
CCDC50-202ENST00000392456 NDUFC1O43677 76 aa13.2□□□□□ -0.3
CCDC50-202ENST00000392456 TRGV2A0A075B6R0 118 aa13.2□□□□□ -0.3
CCDC50-202ENST00000392456 DEFB130BP0DP73 79 aa13.19□□□□□ -0.3
CCDC50-202ENST00000392456 DEFB130AP0DP74 79 aa13.19□□□□□ -0.3
CCDC50-202ENST00000392456 SOSTDC1Q6X4U4 206 aa13.19□□□□□ -0.3
CCDC50-202ENST00000392456 LAMTOR3Q9UHA4 124 aa13.19□□□□□ -0.3
CCDC50-202ENST00000392456 ZNF625Q96I27 306 aaPredicted RBP13.19□□□□□ -0.3
CCDC50-202ENST00000392456 IGHV4-28A0A0C4DH34 117 aa13.17□□□□□ -0.3
CCDC50-202ENST00000392456 NDUFA1O15239 70 aa13.17□□□□□ -0.3
CCDC50-202ENST00000392456 FAM104AQ969W3 186 aa13.17□□□□□ -0.3
CCDC50-202ENST00000392456 NCR3O14931 201 aa13.16□□□□□ -0.3
CCDC50-202ENST00000392456 C4orf48Q5BLP8 95 aa13.16□□□□□ -0.3
CCDC50-202ENST00000392456 IGHV3-38A0A0C4DH36 116 aa13.15□□□□□ -0.3
CCDC50-202ENST00000392456 Q8NAQ8 132 aa13.15□□□□□ -0.3
CCDC50-202ENST00000392456 A0A087WYN8 130 aa13.14□□□□□ -0.31
CCDC50-202ENST00000392456 DNHD1Q96M86 4753 aa13.14□□□□□ -0.31
CCDC50-202ENST00000392456 LOC100131303A0A0U1RQF7 123 aa13.13□□□□□ -0.31
CCDC50-202ENST00000392456 LINC00612Q8N6U2 182 aa13.13□□□□□ -0.31
CCDC50-202ENST00000392456 CELA1Q9UNI1 258 aa13.13□□□□□ -0.31
CCDC50-202ENST00000392456 K7EQD1 137 aa13.11□□□□□ -0.31
CCDC50-202ENST00000392456 TRGV4A0A0C4DH28 118 aa13.1□□□□□ -0.31
CCDC50-202ENST00000392456 MIFP14174 115 aa13.09□□□□□ -0.31
CCDC50-202ENST00000392456 ESRGQ1W209 222 aa13.08□□□□□ -0.31
CCDC50-202ENST00000392456 C6orf223Q8N319 242 aa13.08□□□□□ -0.31
CCDC50-202ENST00000392456 TRAV10A0A0B4J240 114 aa13.08□□□□□ -0.32
CCDC50-202ENST00000392456 MRPL55Q7Z7F7 128 aaKnown RBP13.08□□□□□ -0.32
CCDC50-202ENST00000392456 MIR7-3HGQ8N6C7 128 aa13.08□□□□□ -0.32
CCDC50-202ENST00000392456 K7EIL1 84 aa13.07□□□□□ -0.32
CCDC50-202ENST00000392456 LYRM9A8MSI8 78 aa13.06□□□□□ -0.32
CCDC50-202ENST00000392456 RNASE13Q5GAN3 156 aaKnown RBP13.06□□□□□ -0.32
CCDC50-202ENST00000392456 TRBV6-4A0A1B0GX49 114 aa13.05□□□□□ -0.32
CCDC50-202ENST00000392456 Q9H8V8 135 aa13.05□□□□□ -0.32
CCDC50-202ENST00000392456 TRBV10-1A0A0K0K1A3 114 aa13.05□□□□□ -0.32
CCDC50-202ENST00000392456 DAD1P61803 113 aa13.05□□□□□ -0.32
CCDC50-202ENST00000392456 RPL36AP83881 106 aaKnown RBP13.05□□□□□ -0.32
CCDC50-202ENST00000392456 RPL36ALQ969Q0 106 aaKnown RBP13.05□□□□□ -0.32
CCDC50-202ENST00000392456 CHCHD7Q9BUK0 85 aa13.05□□□□□ -0.32
CCDC50-202ENST00000392456 TRBV7-4A0A0J9YYF1 115 aa13.04□□□□□ -0.32
CCDC50-202ENST00000392456 IGKV2-29A2NJV5 120 aaPredicted RBP13.04□□□□□ -0.32
CCDC50-202ENST00000392456 NTM-AS1Q6ZSK4 140 aa13.04□□□□□ -0.32
CCDC50-202ENST00000392456 HUWE1Q7Z6Z7 4374 aaKnown RBP13.03□□□□□ -0.32
CCDC50-202ENST00000392456 UBL5Q9BZL1 73 aa13.03□□□□□ -0.32
CCDC50-202ENST00000392456 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.03□□□□□ -0.32
CCDC50-202ENST00000392456 A0A087WZ39 114 aa13.02□□□□□ -0.32
CCDC50-202ENST00000392456 H0YGX0 51 aa13.02□□□□□ -0.32
CCDC50-202ENST00000392456 LECT2O14960 151 aa13.01□□□□□ -0.33
CCDC50-202ENST00000392456 KPRPQ5T749 579 aaPredicted RBP13.01□□□□□ -0.33
CCDC50-202ENST00000392456 CDKN2A-AS1Q9UH64 79 aa13.01□□□□□ -0.33
CCDC50-202ENST00000392456 SPART-AS1P0CW21 52 aa13.01□□□□□ -0.33
CCDC50-202ENST00000392456 CRPP02741 224 aa13□□□□□ -0.33
CCDC50-202ENST00000392456 ORMDL1Q9P0S3 153 aa13□□□□□ -0.33
CCDC50-202ENST00000392456 SMIM11BQ8TCY0 68 aa13□□□□□ -0.33
CCDC50-202ENST00000392456 RBM12B-AS1Q9P1G2 102 aa13□□□□□ -0.33
CCDC50-202ENST00000392456 COL7A1Q02388 2944 aa13□□□□□ -0.33
CCDC50-202ENST00000392456 LINC00337Q8N6G1 96 aa12.99□□□□□ -0.33
CCDC50-202ENST00000392456 IGLV5-45A0A087WSX0 123 aa12.99□□□□□ -0.33
CCDC50-202ENST00000392456 TM2D3Q9BRN9 247 aa12.99□□□□□ -0.33
CCDC50-202ENST00000392456 GYPEP15421 78 aa12.98□□□□□ -0.33
CCDC50-202ENST00000392456 HTN3P15516 51 aa12.98□□□□□ -0.33
CCDC50-202ENST00000392456 IGLV5-39A0A0G2JS06 123 aa12.98□□□□□ -0.33
CCDC50-202ENST00000392456 SLPIP03973 132 aa12.98□□□□□ -0.33
CCDC50-202ENST00000392456 PRO0255Q9UI72 69 aa12.98□□□□□ -0.33
CCDC50-202ENST00000392456 A0A096LPF7 62 aa12.97□□□□□ -0.33
CCDC50-202ENST00000392456 JMJD7-PLA2G4BH0Y9G9 81 aa12.97□□□□□ -0.33
CCDC50-202ENST00000392456 A0A0J9YWU9 116 aa12.96□□□□□ -0.33
CCDC50-202ENST00000392456 STAB2Q8WWQ8 2551 aa12.96□□□□□ -0.33
CCDC50-202ENST00000392456 IGKV2-28A0A075B6P5 120 aa12.95□□□□□ -0.34
CCDC50-202ENST00000392456 IGKV2D-28P01615 120 aa12.95□□□□□ -0.34
CCDC50-202ENST00000392456 Q6ZTC4 211 aa12.94□□□□□ -0.34
CCDC50-202ENST00000392456 DNAH9Q9NYC9 4486 aa12.94□□□□□ -0.34
CCDC50-202ENST00000392456 Q1T7F1 81 aa12.93□□□□□ -0.34
CCDC50-202ENST00000392456 TMEM254Q8TBM7 123 aa12.93□□□□□ -0.34
CCDC50-202ENST00000392456 C11orf45Q8TAV5 145 aa12.92□□□□□ -0.34
CCDC50-202ENST00000392456 LINC01547P58512 204 aaPredicted RBP12.91□□□□□ -0.34
CCDC50-202ENST00000392456 C11orf68Q9H3H3 251 aaKnown RBP12.9□□□□□ -0.34
CCDC50-202ENST00000392456 TRBV6-8A0A0A6YYG3 113 aa12.89□□□□□ -0.35
CCDC50-202ENST00000392456 ERC2-IT1O76042 136 aa12.89□□□□□ -0.35
CCDC50-202ENST00000392456 FUSP35637 526 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCDC50-202ENST00000392456 NANOS2P60321 138 aaKnown RBP12.89□□□□□ -0.35
CCDC50-202ENST00000392456 Q6ZRP5 223 aa12.89□□□□□ -0.35
CCDC50-202ENST00000392456 KTN1-AS1Q86SY8 53 aa12.89□□□□□ -0.35
CCDC50-202ENST00000392456 COX6A2Q02221 97 aa12.89□□□□□ -0.35
CCDC50-202ENST00000392456 PRKDCP78527 4128 aaKnown RBP12.88□□□□□ -0.35
CCDC50-202ENST00000392456 MEGF8Q7Z7M0 2845 aa12.88□□□□□ -0.35
CCDC50-202ENST00000392456 LINC00167Q96N53 147 aa12.88□□□□□ -0.35
CCDC50-202ENST00000392456 NREPQ16612 68 aa12.87□□□□□ -0.35
CCDC50-202ENST00000392456 Q8N3U1 123 aa12.86□□□□□ -0.35
CCDC50-202ENST00000392456 SMIM1B2RUZ4 78 aa12.86□□□□□ -0.35
CCDC50-202ENST00000392456 SND1-IT1Q9HBX3 110 aa12.86□□□□□ -0.35
CCDC50-202ENST00000392456 PRYO14603 147 aa12.85□□□□□ -0.35
CCDC50-202ENST00000392456 LINC00242Q5T6M2 205 aa12.85□□□□□ -0.35
CCDC50-202ENST00000392456 DGAT2L7PQ6IED9 249 aa12.85□□□□□ -0.35
CCDC50-202ENST00000392456 hDV103S1A0JD37 113 aa12.84□□□□□ -0.35
CCDC50-202ENST00000392456 IGLV4-60A0A075B6I1 120 aa12.83□□□□□ -0.36
CCDC50-202ENST00000392456 UBE2L6O14933 153 aa12.83□□□□□ -0.36
CCDC50-202ENST00000392456 HAMPP81172 84 aa12.83□□□□□ -0.36
CCDC50-202ENST00000392456 CDC42SE2Q9NRR3 84 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms