RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SERP1Q9Y6X1 66 aa6.7□□□□□ -1.34
COL6A3-204ENST00000392003 NDUFC2O95298 119 aa6.69□□□□□ -1.34
COL6A3-204ENST00000392003 CLPSL2Q6UWE3 100 aa6.69□□□□□ -1.34
COL6A3-204ENST00000392003 TENM1Q9UKZ4 2725 aa6.69□□□□□ -1.34
COL6A3-204ENST00000392003 VWFP04275 2813 aa6.69□□□□□ -1.34
COL6A3-204ENST00000392003 STAB1Q9NY15 2570 aa6.68□□□□□ -1.34
COL6A3-204ENST00000392003 IGHV4-28A0A0C4DH34 117 aa6.68□□□□□ -1.34
COL6A3-204ENST00000392003 USP17L23D6RBM5 183 aa6.68□□□□□ -1.34
COL6A3-204ENST00000392003 FAM229BQ4G0N7 80 aa6.68□□□□□ -1.34
COL6A3-204ENST00000392003 IGHV4-30-4P0DP06 118 aa6.68□□□□□ -1.34
COL6A3-204ENST00000392003 SMIM26A0A096LP01 95 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 CXCL5P42830 114 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 INAFM2P0DMQ5 153 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 MIFP14174 115 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 KRTAP24-1Q3LI83 254 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 WFDC9Q8NEX5 89 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 ANGP03950 147 aaKnown RBP6.67□□□□□ -1.34
COL6A3-204ENST00000392003 SPART-AS1P0CW21 52 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 CCL18P55774 89 aa6.67□□□□□ -1.34
COL6A3-204ENST00000392003 LINC00269Q8N2A0 174 aa6.66□□□□□ -1.34
COL6A3-204ENST00000392003 COL6A5A8TX70 2615 aa6.66□□□□□ -1.34
COL6A3-204ENST00000392003 DNAL4O96015 105 aa6.66□□□□□ -1.34
COL6A3-204ENST00000392003 RPL28P46779 137 aaKnown RBP6.66□□□□□ -1.34
COL6A3-204ENST00000392003 Q8IZM0 81 aa6.66□□□□□ -1.34
COL6A3-204ENST00000392003 BAALC-AS2P0C853 105 aa6.65□□□□□ -1.34
COL6A3-204ENST00000392003 H7BZZ5 65 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 CD164L2Q6UWJ8 174 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 LINC00337Q8N6G1 96 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 REG3AQ06141 175 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 CHCHD10Q8WYQ3 142 aaPredicted RBP6.64□□□□□ -1.35
COL6A3-204ENST00000392003 H0YGX0 51 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 C6orf223Q8N319 242 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 RBM12B-AS1Q9P1G2 102 aa6.64□□□□□ -1.35
COL6A3-204ENST00000392003 IGLV10-54A0A075B6I4 117 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 IGKV2-28A0A075B6P5 120 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 TRBV7-6A0A0J9YX20 115 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 IGKV2D-28P01615 120 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 SMIM11BQ8TCY0 68 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 CCKP06307 115 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 Q8NAQ8 132 aa6.63□□□□□ -1.35
COL6A3-204ENST00000392003 MRPL55Q7Z7F7 128 aaKnown RBP6.62□□□□□ -1.35
COL6A3-204ENST00000392003 CELA1Q9UNI1 258 aa6.62□□□□□ -1.35
COL6A3-204ENST00000392003 SNURFQ9Y675 71 aa6.62□□□□□ -1.35
COL6A3-204ENST00000392003 TRAV23DV6A0A075B6W5 121 aa6.62□□□□□ -1.35
COL6A3-204ENST00000392003 CYSRT1A8MQ03 144 aa6.62□□□□□ -1.35
COL6A3-204ENST00000392003 A8MU10 97 aa6.61□□□□□ -1.35
COL6A3-204ENST00000392003 GHRHP01286 108 aa6.61□□□□□ -1.35
COL6A3-204ENST00000392003 LELP1Q5T871 98 aa6.61□□□□□ -1.35
COL6A3-204ENST00000392003 NOTCH1P46531 2555 aa6.61□□□□□ -1.35
COL6A3-204ENST00000392003 NDUFC2-KCTD14E9PQ53 114 aa6.61□□□□□ -1.35
COL6A3-204ENST00000392003 FAM218AQ96MZ4 157 aa6.61□□□□□ -1.35
COL6A3-204ENST00000392003 Q9HAA7 133 aa6.6□□□□□ -1.35
COL6A3-204ENST00000392003 COX17Q14061 63 aa6.6□□□□□ -1.35
COL6A3-204ENST00000392003 RMI2Q96E14 147 aa6.6□□□□□ -1.35
COL6A3-204ENST00000392003 Q6ZRU5 148 aa6.59□□□□□ -1.35
COL6A3-204ENST00000392003 Q8N3U1 123 aa6.58□□□□□ -1.36
COL6A3-204ENST00000392003 KLK12Q9UKR0 248 aa6.58□□□□□ -1.36
COL6A3-204ENST00000392003 LECT2O14960 151 aa6.58□□□□□ -1.36
COL6A3-204ENST00000392003 SPAG11BQ08648 103 aa6.58□□□□□ -1.36
COL6A3-204ENST00000392003 PRR15Q8IV56 129 aa6.58□□□□□ -1.36
COL6A3-204ENST00000392003 C22orf24Q9Y442 160 aa6.58□□□□□ -1.36
COL6A3-204ENST00000392003 F8WEM9 126 aa6.57□□□□□ -1.36
COL6A3-204ENST00000392003 KIAA0087Q14695 138 aa6.57□□□□□ -1.36
COL6A3-204ENST00000392003 C9orf129Q5T035 196 aaKnown RBP6.57□□□□□ -1.36
COL6A3-204ENST00000392003 KRTAP10-11P60412 298 aa6.57□□□□□ -1.36
COL6A3-204ENST00000392003 A0A087WYN8 130 aa6.57□□□□□ -1.36
COL6A3-204ENST00000392003 LINC00846Q9NV44 126 aa6.56□□□□□ -1.36
COL6A3-204ENST00000392003 PRB2P02812 416 aaPredicted RBP6.56□□□□□ -1.36
COL6A3-204ENST00000392003 MGAM2Q2M2H8 2515 aa6.55□□□□□ -1.36
COL6A3-204ENST00000392003 MUC7Q8TAX7 377 aa6.55□□□□□ -1.36
COL6A3-204ENST00000392003 ORMDL1Q9P0S3 153 aa6.55□□□□□ -1.36
COL6A3-204ENST00000392003 C9orf116Q5BN46 136 aaPredicted RBP6.55□□□□□ -1.36
COL6A3-204ENST00000392003 PRR3P79522 188 aaKnown RBP6.54□□□□□ -1.36
COL6A3-204ENST00000392003 UNQ6190/PRO20217Q6UXQ8 127 aa6.53□□□□□ -1.36
COL6A3-204ENST00000392003 NCR3O14931 201 aa6.53□□□□□ -1.36
COL6A3-204ENST00000392003 TRRAPQ9Y4A5 3859 aa6.53□□□□□ -1.36
COL6A3-204ENST00000392003 LRCOL1A6NCL2 159 aa6.53□□□□□ -1.36
COL6A3-204ENST00000392003 PRR34Q9NV39 138 aa6.53□□□□□ -1.36
COL6A3-204ENST00000392003 KPRPQ5T749 579 aaPredicted RBP6.52□□□□□ -1.37
COL6A3-204ENST00000392003 C14orf132Q9NPU4 83 aa6.52□□□□□ -1.37
COL6A3-204ENST00000392003 SLPIP03973 132 aa6.52□□□□□ -1.37
COL6A3-204ENST00000392003 A0A0J9YWU9 116 aa6.52□□□□□ -1.37
COL6A3-204ENST00000392003 Q6ZTC4 211 aa6.52□□□□□ -1.37
COL6A3-204ENST00000392003 H3BNG1 76 aa6.51□□□□□ -1.37
COL6A3-204ENST00000392003 ENHOQ6UWT2 76 aa6.51□□□□□ -1.37
COL6A3-204ENST00000392003 Q6JHZ5 121 aa6.51□□□□□ -1.37
COL6A3-204ENST00000392003 NANOS2P60321 138 aaKnown RBP6.51□□□□□ -1.37
COL6A3-204ENST00000392003 EGFEM1PQ0D2K5 195 aa6.51□□□□□ -1.37
COL6A3-204ENST00000392003 C10orf25Q5T742 122 aa6.51□□□□□ -1.37
COL6A3-204ENST00000392003 DEFB131BA0A096LNP1 70 aa6.5□□□□□ -1.37
COL6A3-204ENST00000392003 C6orf99Q4VX62 202 aa6.5□□□□□ -1.37
COL6A3-204ENST00000392003 Q8N814 137 aa6.49□□□□□ -1.37
COL6A3-204ENST00000392003 C8orf87E5RJ46 101 aa6.49□□□□□ -1.37
COL6A3-204ENST00000392003 TMEM256-PLSCR3K7ERE1 68 aa6.49□□□□□ -1.37
COL6A3-204ENST00000392003 FBN1P35555 2871 aaKnown RBP6.49□□□□□ -1.37
COL6A3-204ENST00000392003 PRR26Q8N8Z3 221 aa6.49□□□□□ -1.37
COL6A3-204ENST00000392003 JMJD7-PLA2G4BH0Y9G9 81 aa6.48□□□□□ -1.37
COL6A3-204ENST00000392003 WFDC10BQ8IUB3 73 aa6.48□□□□□ -1.37
COL6A3-204ENST00000392003 CAMK2N2Q96S95 79 aa6.48□□□□□ -1.37
COL6A3-204ENST00000392003 TM2D3Q9BRN9 247 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms