RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 M0R2N4 97 aa12.16□□□□□ -0.46
SQSTM1-202ENST00000389805 X6R8D5 127 aa12.16□□□□□ -0.46
SQSTM1-202ENST00000389805 TMEM256-PLSCR3K7ERE1 68 aa12.16□□□□□ -0.46
SQSTM1-202ENST00000389805 GYPEP15421 78 aa12.15□□□□□ -0.46
SQSTM1-202ENST00000389805 HAMPP81172 84 aa12.15□□□□□ -0.46
SQSTM1-202ENST00000389805 TEP1Q99973 2627 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-202ENST00000389805 ATP5EP2Q5VTU8 51 aa12.14□□□□□ -0.47
SQSTM1-202ENST00000389805 LINC00959A0A1B0GUT2 108 aa12.14□□□□□ -0.47
SQSTM1-202ENST00000389805 TRAV10A0A0B4J240 114 aa12.13□□□□□ -0.47
SQSTM1-202ENST00000389805 H7BZZ5 65 aa12.13□□□□□ -0.47
SQSTM1-202ENST00000389805 DEFB135Q30KP9 77 aa12.13□□□□□ -0.47
SQSTM1-202ENST00000389805 C6orf99Q4VX62 202 aa12.13□□□□□ -0.47
SQSTM1-202ENST00000389805 LINC00336Q6ZUF6 198 aa12.13□□□□□ -0.47
SQSTM1-202ENST00000389805 RMI2Q96E14 147 aa12.13□□□□□ -0.47
SQSTM1-202ENST00000389805 NDUFC2-KCTD14E9PQ53 114 aa12.12□□□□□ -0.47
SQSTM1-202ENST00000389805 C9orf116Q5BN46 136 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-202ENST00000389805 LYPD5Q6UWN5 251 aa12.11□□□□□ -0.47
SQSTM1-202ENST00000389805 LINC00167Q96N53 147 aa12.11□□□□□ -0.47
SQSTM1-202ENST00000389805 LAMTOR3Q9UHA4 124 aa12.11□□□□□ -0.47
SQSTM1-202ENST00000389805 LINC00612Q8N6U2 182 aa12.09□□□□□ -0.47
SQSTM1-202ENST00000389805 RBM3P98179 157 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-202ENST00000389805 SCXQ7RTU7 201 aa12.08□□□□□ -0.48
SQSTM1-202ENST00000389805 Q8N3U1 123 aa12.08□□□□□ -0.48
SQSTM1-202ENST00000389805 LINC01547P58512 204 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-202ENST00000389805 Q8NDZ9 215 aa12.07□□□□□ -0.48
SQSTM1-202ENST00000389805 SERP1Q9Y6X1 66 aa12.07□□□□□ -0.48
SQSTM1-202ENST00000389805 TRAV7A0A075B6U4 112 aa12.06□□□□□ -0.48
SQSTM1-202ENST00000389805 F8WEM9 126 aa12.06□□□□□ -0.48
SQSTM1-202ENST00000389805 C9orf66Q5T8R8 295 aa12.06□□□□□ -0.48
SQSTM1-202ENST00000389805 Q6ZQT0 140 aa12.06□□□□□ -0.48
SQSTM1-202ENST00000389805 PRO0255Q9UI72 69 aa12.06□□□□□ -0.48
SQSTM1-202ENST00000389805 IGLV10-54A0A075B6I4 117 aa12.05□□□□□ -0.48
SQSTM1-202ENST00000389805 TRBV10-3A0A0K0K1G6 114 aa12.05□□□□□ -0.48
SQSTM1-202ENST00000389805 Q6ZVQ6 151 aa12.04□□□□□ -0.48
SQSTM1-202ENST00000389805 C1orf43Q9BWL3 253 aa12.04□□□□□ -0.48
SQSTM1-202ENST00000389805 LINC00269Q8N2A0 174 aa12.03□□□□□ -0.48
SQSTM1-202ENST00000389805 IGHV4-28A0A0C4DH34 117 aa12.03□□□□□ -0.48
SQSTM1-202ENST00000389805 Q8IZM0 81 aa12.03□□□□□ -0.48
SQSTM1-202ENST00000389805 CELA1Q9UNI1 258 aa12.03□□□□□ -0.48
SQSTM1-202ENST00000389805 MRAPQ8TCY5 172 aa12.03□□□□□ -0.48
SQSTM1-202ENST00000389805 LINC00474Q9P2X8 69 aa12.03□□□□□ -0.48
SQSTM1-202ENST00000389805 FP248Q71RG6 208 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-202ENST00000389805 PKIGQ9Y2B9 76 aa12.02□□□□□ -0.49
SQSTM1-202ENST00000389805 LINC00575Q6W349 94 aa12.01□□□□□ -0.49
SQSTM1-202ENST00000389805 TM2D3Q9BRN9 247 aa12.01□□□□□ -0.49
SQSTM1-202ENST00000389805 HTN3P15516 51 aa12□□□□□ -0.49
SQSTM1-202ENST00000389805 PRO0628Q9UI54 55 aa12□□□□□ -0.49
SQSTM1-202ENST00000389805 EPM2AB3EWF7 344 aa11.99□□□□□ -0.49
SQSTM1-202ENST00000389805 KLKP1Q107X0 134 aa11.99□□□□□ -0.49
SQSTM1-202ENST00000389805 Q6ZQY7 126 aa11.99□□□□□ -0.49
SQSTM1-202ENST00000389805 LYRM9A8MSI8 78 aa11.98□□□□□ -0.49
SQSTM1-202ENST00000389805 ZNF561-AS1K7EIQ3 104 aa11.98□□□□□ -0.49
SQSTM1-202ENST00000389805 DAD1P61803 113 aa11.98□□□□□ -0.49
SQSTM1-202ENST00000389805 A0A1B0GUV1 79 aa11.97□□□□□ -0.49
SQSTM1-202ENST00000389805 F8P00451 2351 aa11.96□□□□□ -0.49
SQSTM1-202ENST00000389805 KIAA0087Q14695 138 aa11.96□□□□□ -0.49
SQSTM1-202ENST00000389805 APOC4P55056 127 aa11.96□□□□□ -0.5
SQSTM1-202ENST00000389805 Q8NAQ8 132 aa11.95□□□□□ -0.5
SQSTM1-202ENST00000389805 ANGP03950 147 aaKnown RBP11.95□□□□□ -0.5
SQSTM1-202ENST00000389805 C6orf223Q8N319 242 aa11.94□□□□□ -0.5
SQSTM1-202ENST00000389805 SMIM26A0A096LP01 95 aa11.94□□□□□ -0.5
SQSTM1-202ENST00000389805 TRBV7-6A0A0J9YX20 115 aa11.94□□□□□ -0.5
SQSTM1-202ENST00000389805 LOC110117498A0A087WWA1 95 aa11.94□□□□□ -0.5
SQSTM1-202ENST00000389805 IGHV4-30-4P0DP06 118 aa11.94□□□□□ -0.5
SQSTM1-202ENST00000389805 C10orf25Q5T742 122 aa11.93□□□□□ -0.5
SQSTM1-202ENST00000389805 PKD1L1Q8TDX9 2849 aa11.93□□□□□ -0.5
SQSTM1-202ENST00000389805 CHCHD10Q8WYQ3 142 aaPredicted RBP11.92□□□□□ -0.5
SQSTM1-202ENST00000389805 UNQ6190/PRO20217Q6UXQ8 127 aa11.91□□□□□ -0.5
SQSTM1-202ENST00000389805 Q8N9L7 120 aa11.91□□□□□ -0.5
SQSTM1-202ENST00000389805 A0A0U1RQV1 116 aa11.91□□□□□ -0.5
SQSTM1-202ENST00000389805 REG3AQ06141 175 aa11.91□□□□□ -0.5
SQSTM1-202ENST00000389805 MAST4O15021 2626 aa11.91□□□□□ -0.5
SQSTM1-202ENST00000389805 BRK1Q8WUW1 75 aa11.91□□□□□ -0.5
SQSTM1-202ENST00000389805 STAB1Q9NY15 2570 aa11.9□□□□□ -0.5
SQSTM1-202ENST00000389805 MPLKIPQ8TAP9 179 aa11.9□□□□□ -0.5
SQSTM1-202ENST00000389805 MUC7Q8TAX7 377 aa11.9□□□□□ -0.5
SQSTM1-202ENST00000389805 OXLD1Q5BKU9 147 aa11.89□□□□□ -0.51
SQSTM1-202ENST00000389805 MIFP14174 115 aa11.89□□□□□ -0.51
SQSTM1-202ENST00000389805 COX17Q14061 63 aa11.89□□□□□ -0.51
SQSTM1-202ENST00000389805 NOTCH1P46531 2555 aa11.89□□□□□ -0.51
SQSTM1-202ENST00000389805 BCE1O60756 84 aa11.88□□□□□ -0.51
SQSTM1-202ENST00000389805 ANK2Q01484 3957 aa11.88□□□□□ -0.51
SQSTM1-202ENST00000389805 CD164L2Q6UWJ8 174 aa11.88□□□□□ -0.51
SQSTM1-202ENST00000389805 SPART-AS1P0CW21 52 aa11.88□□□□□ -0.51
SQSTM1-202ENST00000389805 CXCL6P80162 114 aa11.87□□□□□ -0.51
SQSTM1-202ENST00000389805 FAM229BQ4G0N7 80 aa11.87□□□□□ -0.51
SQSTM1-202ENST00000389805 TRBV7-4A0A0J9YYF1 115 aa11.87□□□□□ -0.51
SQSTM1-202ENST00000389805 NREPQ16612 68 aa11.87□□□□□ -0.51
SQSTM1-202ENST00000389805 FBN1P35555 2871 aaKnown RBP11.87□□□□□ -0.51
SQSTM1-202ENST00000389805 RETNQ9HD89 108 aa11.86□□□□□ -0.51
SQSTM1-202ENST00000389805 XAGE1AQ9HD64 81 aa11.85□□□□□ -0.51
SQSTM1-202ENST00000389805 TMEM254Q8TBM7 123 aa11.84□□□□□ -0.51
SQSTM1-202ENST00000389805 BPY2O14599 106 aa11.84□□□□□ -0.51
SQSTM1-202ENST00000389805 KLK12Q9UKR0 248 aa11.84□□□□□ -0.51
SQSTM1-202ENST00000389805 TENM3Q9P273 2699 aa11.83□□□□□ -0.52
SQSTM1-202ENST00000389805 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-202ENST00000389805 SPAG11BQ08648 103 aa11.82□□□□□ -0.52
SQSTM1-202ENST00000389805 CYSRT1A8MQ03 144 aa11.81□□□□□ -0.52
SQSTM1-202ENST00000389805 IGLV6-57P01721 117 aa11.81□□□□□ -0.52
SQSTM1-202ENST00000389805 KRTAP10-11P60412 298 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms