RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 COLCA2A8K830 154 aa10.11□□□□□ -0.79
HMGN4-201ENST00000377575 VPREB1P12018 145 aa10.11□□□□□ -0.79
HMGN4-201ENST00000377575 RPL13AP40429 203 aaKnown RBP10.11□□□□□ -0.79
HMGN4-201ENST00000377575 LINC00310P59036 64 aa10.11□□□□□ -0.79
HMGN4-201ENST00000377575 HSPB8Q9UJY1 196 aa10.11□□□□□ -0.79
HMGN4-201ENST00000377575 LINC00158P58513 81 aa10.1□□□□□ -0.79
HMGN4-201ENST00000377575 IGKV2-28A0A075B6P5 120 aa10.09□□□□□ -0.79
HMGN4-201ENST00000377575 IGKV2D-28P01615 120 aa10.09□□□□□ -0.79
HMGN4-201ENST00000377575 SCO1O75880 301 aa10.08□□□□□ -0.8
HMGN4-201ENST00000377575 PLNP26678 52 aa10.08□□□□□ -0.8
HMGN4-201ENST00000377575 UBE2AP49459 152 aa10.08□□□□□ -0.8
HMGN4-201ENST00000377575 HERV-K104P63124 156 aa10.08□□□□□ -0.8
HMGN4-201ENST00000377575 ATP6V1G1O75348 118 aa10.07□□□□□ -0.8
HMGN4-201ENST00000377575 MEIG1Q5JSS6 88 aa10.07□□□□□ -0.8
HMGN4-201ENST00000377575 LINC00587B1AMM8 73 aa10.06□□□□□ -0.8
HMGN4-201ENST00000377575 NDUFA12Q9UI09 145 aa10.06□□□□□ -0.8
HMGN4-201ENST00000377575 A0A0U1RRA0 63 aa10.05□□□□□ -0.8
HMGN4-201ENST00000377575 MYMXA0A1B0GTQ4 84 aa10.05□□□□□ -0.8
HMGN4-201ENST00000377575 FABP4P15090 132 aa10.05□□□□□ -0.8
HMGN4-201ENST00000377575 DPM2O94777 84 aa10.04□□□□□ -0.8
HMGN4-201ENST00000377575 SMIM13P0DJ93 91 aa10.04□□□□□ -0.8
HMGN4-201ENST00000377575 HERVK_113P61574 105 aa10.04□□□□□ -0.8
HMGN4-201ENST00000377575 KRTAP13-1Q8IUC0 172 aa10.04□□□□□ -0.8
HMGN4-201ENST00000377575 Q8NDZ9 215 aa10.03□□□□□ -0.8
HMGN4-201ENST00000377575 PLEKHB2Q96CS7 222 aa10.03□□□□□ -0.8
HMGN4-201ENST00000377575 MAP1LC3CQ9BXW4 147 aa10.03□□□□□ -0.8
HMGN4-201ENST00000377575 TMEM126AQ9H061 195 aa10.03□□□□□ -0.8
HMGN4-201ENST00000377575 UBR4Q5T4S7 5183 aa10.02□□□□□ -0.8
HMGN4-201ENST00000377575 LEPROTO15243 131 aa10.02□□□□□ -0.81
HMGN4-201ENST00000377575 FAM19A1Q7Z5A9 133 aa10.02□□□□□ -0.81
HMGN4-201ENST00000377575 TMEM238C9JI98 176 aa10.01□□□□□ -0.81
HMGN4-201ENST00000377575 IGKCP01834 107 aa10.01□□□□□ -0.81
HMGN4-201ENST00000377575 MIR7-3HGQ8N6C7 128 aa10.01□□□□□ -0.81
HMGN4-201ENST00000377575 M0R378 163 aa10□□□□□ -0.81
HMGN4-201ENST00000377575 TSPEAR-AS2P59090 65 aa10□□□□□ -0.81
HMGN4-201ENST00000377575 PRLHP81277 87 aa10□□□□□ -0.81
HMGN4-201ENST00000377575 BOD1L2Q8IYS8 172 aa10□□□□□ -0.81
HMGN4-201ENST00000377575 LRP2P98164 4655 aa10□□□□□ -0.81
HMGN4-201ENST00000377575 CRYGAP11844 174 aa9.99□□□□□ -0.81
HMGN4-201ENST00000377575 NMUP48645 174 aa9.99□□□□□ -0.81
HMGN4-201ENST00000377575 PMCHL2Q9BQD1 86 aa9.99□□□□□ -0.81
HMGN4-201ENST00000377575 J3QQQ9 107 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BKO60814 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BJP06899 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 LGALS3P17931 250 aaKnown RBP9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BOP23527 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BBP33778 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BDP58876 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BCP62807 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST2H2BEQ16778 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BHQ93079 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BNQ99877 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 HIST1H2BMQ99879 126 aa9.98□□□□□ -0.81
HMGN4-201ENST00000377575 A0A087X002 238 aa9.97□□□□□ -0.81
HMGN4-201ENST00000377575 IGKV2D-26A0A0A0MRZ7 120 aa9.97□□□□□ -0.81
HMGN4-201ENST00000377575 NCR3O14931 201 aa9.96□□□□□ -0.82
HMGN4-201ENST00000377575 FAM229BQ4G0N7 80 aa9.96□□□□□ -0.82
HMGN4-201ENST00000377575 TYMSOSQ8TAI1 123 aa9.96□□□□□ -0.82
HMGN4-201ENST00000377575 PRYO14603 147 aa9.95□□□□□ -0.82
HMGN4-201ENST00000377575 SYS1-DBNDD2H3BUS1 97 aa9.93□□□□□ -0.82
HMGN4-201ENST00000377575 S100A12P80511 92 aa9.93□□□□□ -0.82
HMGN4-201ENST00000377575 MIEN1Q9BRT3 115 aa9.93□□□□□ -0.82
HMGN4-201ENST00000377575 E9PLD3 99 aa9.92□□□□□ -0.82
HMGN4-201ENST00000377575 DAND5Q8N907 189 aa9.92□□□□□ -0.82
HMGN4-201ENST00000377575 HIGD2AQ9BW72 106 aa9.92□□□□□ -0.82
HMGN4-201ENST00000377575 ANAPC11Q9NYG5 84 aa9.92□□□□□ -0.82
HMGN4-201ENST00000377575 LOC107984156A0A0G2JMH3 177 aa9.91□□□□□ -0.82
HMGN4-201ENST00000377575 ARL17AQ8IVW1 177 aa9.91□□□□□ -0.82
HMGN4-201ENST00000377575 KCNQ1DNQ9H478 68 aa9.91□□□□□ -0.82
HMGN4-201ENST00000377575 TRBV10-3A0A0K0K1G6 114 aa9.89□□□□□ -0.83
HMGN4-201ENST00000377575 TRBV10-2A0A0K0K1G8 114 aa9.89□□□□□ -0.83
HMGN4-201ENST00000377575 KRTAP13-2Q52LG2 175 aa9.89□□□□□ -0.83
HMGN4-201ENST00000377575 PET117Q6UWS5 81 aa9.89□□□□□ -0.83
HMGN4-201ENST00000377575 LINC00337Q8N6G1 96 aa9.89□□□□□ -0.83
HMGN4-201ENST00000377575 ETDCA0A1B0GVM5 59 aa9.88□□□□□ -0.83
HMGN4-201ENST00000377575 SPRR1AP35321 89 aa9.88□□□□□ -0.83
HMGN4-201ENST00000377575 LINC01545Q5VT33 79 aa9.88□□□□□ -0.83
HMGN4-201ENST00000377575 SPANXB1Q9NS25 103 aaPredicted RBP9.88□□□□□ -0.83
HMGN4-201ENST00000377575 ZNF706Q9Y5V0 76 aaPredicted RBP9.88□□□□□ -0.83
HMGN4-201ENST00000377575 A0A0J9YXY3 114 aa9.87□□□□□ -0.83
HMGN4-201ENST00000377575 TSPAN13O95857 204 aa9.87□□□□□ -0.83
HMGN4-201ENST00000377575 PRR4Q16378 134 aa9.87□□□□□ -0.83
HMGN4-201ENST00000377575 NDUFC2O95298 119 aa9.86□□□□□ -0.83
HMGN4-201ENST00000377575 DDTP30046 118 aa9.86□□□□□ -0.83
HMGN4-201ENST00000377575 COA6Q5JTJ3 125 aaKnown RBP9.86□□□□□ -0.83
HMGN4-201ENST00000377575 LINC00304Q8N9R0 145 aa9.85□□□□□ -0.83
HMGN4-201ENST00000377575 KRTAP4-16G5E9R7 235 aaPredicted RBP9.84□□□□□ -0.83
HMGN4-201ENST00000377575 S100A7L2Q5SY68 101 aa9.84□□□□□ -0.83
HMGN4-201ENST00000377575 SPRR4Q96PI1 79 aa9.84□□□□□ -0.83
HMGN4-201ENST00000377575 LPAP08519 4548 aa9.84□□□□□ -0.83
HMGN4-201ENST00000377575 C3orf79P0CE67 100 aa9.83□□□□□ -0.84
HMGN4-201ENST00000377575 KRTDAPP60985 99 aa9.82□□□□□ -0.84
HMGN4-201ENST00000377575 NPC2P61916 151 aa9.82□□□□□ -0.84
HMGN4-201ENST00000377575 C20orf202A1L168 122 aa9.81□□□□□ -0.84
HMGN4-201ENST00000377575 ADAMTSL4-AS1Q5T5F5 129 aa9.81□□□□□ -0.84
HMGN4-201ENST00000377575 ZNF815PA8K554 130 aa9.8□□□□□ -0.84
HMGN4-201ENST00000377575 TIMM17BO60830 172 aa9.8□□□□□ -0.84
HMGN4-201ENST00000377575 IGLV6-57P01721 117 aa9.8□□□□□ -0.84
HMGN4-201ENST00000377575 SOSTDC1Q6X4U4 206 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms