RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 BCE1O60756 84 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 AKAIN1P0CW23 69 aa0.01□□□□□ -2.41
VPS13A-206ENST00000376646 SMR3BP02814 79 aaPredicted RBP0□□□□□ -2.41
VPS13A-206ENST00000376646 ANK3Q12955 4377 aaKnown RBP0□□□□□ -2.41
VPS13A-206ENST00000376646 C8orf59Q8N0T1 100 aaPredicted RBP0□□□□□ -2.41
VPS13A-206ENST00000376646 AMELXQ99217 191 aa0□□□□□ -2.41
VPS13A-206ENST00000376646 QRICH2Q9H0J4 1663 aa0□□□□□ -2.41
VPS13A-206ENST00000376646 TRRAPQ9Y4A5 3859 aa0□□□□□ -2.41
VPS13A-206ENST00000376646 VPS13DQ5THJ4 4388 aa-0□□□□□ -2.41
VPS13A-206ENST00000376646 CDH23Q9H251 3354 aa-0□□□□□ -2.41
VPS13A-206ENST00000376646 FLGP20930 4061 aaPredicted RBP-0□□□□□ -2.41
VPS13A-206ENST00000376646 UTRNP46939 3433 aa-0□□□□□ -2.41
VPS13A-206ENST00000376646 KIF21AQ7Z4S6 1674 aa-0□□□□□ -2.41
VPS13A-206ENST00000376646 ROBO1Q9Y6N7 1651 aa-0□□□□□ -2.41
VPS13A-206ENST00000376646 TRBV7-3A0A075B6L6 115 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 TMEM170BQ5T4T1 132 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 RPL13AP3Q6NVV1 102 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 PP6455Q8WZ26 134 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 MGST2Q99735 147 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 SPANXDQ9BXN6 97 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 DYNLRB1Q9NP97 96 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 SPCS1Q9Y6A9 102 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 WDFY3Q8IZQ1 3526 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 ADCY10Q96PN6 1610 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 DNAH5Q8TE73 4624 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 DNAJC13O75165 2243 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 LPAP08519 4548 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 OOSP1A8MZH6 123 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 F8VRH5 84 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 IFNGP01579 166 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 MRPL54Q6P161 138 aaKnown RBP-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 BAGE2Q86Y30 109 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 PSME4Q14997 1843 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 LYSTQ99698 3801 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 EPRSP07814 1512 aaKnown RBP-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 VPS13BQ7Z7G8 4022 aa-0.01□□□□□ -2.41
VPS13A-206ENST00000376646 AKAP9Q99996 3911 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 COX17Q14061 63 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 WFDC2Q14508 124 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 COMMD6Q7Z4G1 85 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 C5orf38Q86SI9 138 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 LINC00474Q9P2X8 69 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 A2ML1A8K2U0 1454 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 PLEKHH2Q8IVE3 1493 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 NALCNQ8IZF0 1738 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 KTN1Q86UP2 1357 aaKnown RBP-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 XIRP2A4UGR9 3374 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 A0A1B0GV90 55 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 HMGN4O00479 90 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 UQCR11O14957 56 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 SSSCA1O60232 199 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 SNAPC5O75971 98 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 S100A3P33764 101 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 C9orf153Q5TBE3 101 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 Q6JHZ5 121 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 Q8IZM0 81 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 LINC00472Q9H8W2 130 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 ARHGEF12Q9NZN5 1544 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 SBF2Q86WG5 1849 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 MUC17Q685J3 4493 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 DNAH3Q8TD57 4116 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 POLR1AO95602 1720 aaPredicted RBP-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 FMN2Q9NZ56 1722 aa-0.02□□□□□ -2.41
VPS13A-206ENST00000376646 GOLGB1Q14789 3259 aaKnown RBP-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 IGLC7A0M8Q6 106 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 KDM5DQ9BY66 1539 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 ANKRD26Q9UPS8 1709 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 NKTRP30414 1462 aaKnown RBP-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 TEX14Q8IWB6 1497 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 RAPGEF2Q9Y4G8 1499 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 EFCAB10A6NFE3 127 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 DLEU1O43261 78 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 APOC3P02656 99 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 TPPP2P59282 170 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 DEFB109BQ30KR1 87 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 MYO7BQ6PIF6 2116 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 MYOZ3Q8TDC0 251 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 TP53AIP1Q9HCN2 124 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 LINC01558Q9Y6Z2 57 aa-0.03□□□□□ -2.41
VPS13A-206ENST00000376646 RGPD8O14715 1765 aaPredicted RBP-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 RGPD5Q99666 1765 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 PLCH1Q4KWH8 1693 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 MYOM2P54296 1465 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 FXYD6-FXYD2A0A087WZ82 144 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 A0A0G2JMZ2 1700 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 LY75O60449 1722 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 TOPAZ1Q8N9V7 1692 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 TCHHQ07283 1943 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 C10orf142B7Z368 130 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 CHKB-CPT1BH3BT56 60 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 TNFP01375 233 aa-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 SARNPP82979 210 aaKnown RBP-0.04□□□□□ -2.42
VPS13A-206ENST00000376646 APOBP04114 4563 aaKnown RBP-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 DNAH10Q8IVF4 4471 aa-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 TTC37Q6PGP7 1564 aa-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 UBE2L5PA0A1B0GUS4 154 aa-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 I3L2K1 104 aa-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 SFT2D2O95562 160 aa-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 UBE2L3P68036 154 aaKnown RBP-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 LRRC9Q6ZRR7 1453 aa-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms