RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RTL8CO15255 209 aa9.42□□□□□ -0.9
COL4A1-201ENST00000375820 WDR87Q6ZQQ6 2873 aa9.42□□□□□ -0.9
COL4A1-201ENST00000375820 Q96NJ1 140 aa9.41□□□□□ -0.9
COL4A1-201ENST00000375820 IGLV5-39A0A0G2JS06 123 aa9.41□□□□□ -0.9
COL4A1-201ENST00000375820 EPM2AB3EWF7 344 aa9.41□□□□□ -0.9
COL4A1-201ENST00000375820 LINC01561Q8N1V8 128 aa9.41□□□□□ -0.9
COL4A1-201ENST00000375820 TYMSOSQ8TAI1 123 aa9.41□□□□□ -0.9
COL4A1-201ENST00000375820 LINC00313P59037 77 aa9.41□□□□□ -0.9
COL4A1-201ENST00000375820 MYO9AB2RTY4 2548 aa9.4□□□□□ -0.9
COL4A1-201ENST00000375820 NHLRC4P0CG21 123 aaPredicted RBP9.4□□□□□ -0.9
COL4A1-201ENST00000375820 SPINT4Q6UDR6 99 aa9.4□□□□□ -0.9
COL4A1-201ENST00000375820 ATP11AUNQ6ZP68 121 aa9.39□□□□□ -0.91
COL4A1-201ENST00000375820 SMCPP49901 116 aaPredicted RBP9.39□□□□□ -0.91
COL4A1-201ENST00000375820 FAM168BA1KXE4 195 aa9.39□□□□□ -0.91
COL4A1-201ENST00000375820 C16orf90A8MZG2 172 aa9.38□□□□□ -0.91
COL4A1-201ENST00000375820 TM2D3Q9BRN9 247 aa9.37□□□□□ -0.91
COL4A1-201ENST00000375820 ELOF1P60002 83 aaKnown RBP9.37□□□□□ -0.91
COL4A1-201ENST00000375820 FAM229AH3BQW9 127 aa9.36□□□□□ -0.91
COL4A1-201ENST00000375820 JMJD1CQ15652 2540 aa9.35□□□□□ -0.91
COL4A1-201ENST00000375820 Q6ZQT0 140 aa9.34□□□□□ -0.91
COL4A1-201ENST00000375820 Q6ZRX8 168 aa9.33□□□□□ -0.92
COL4A1-201ENST00000375820 TP53AIP1Q9HCN2 124 aa9.33□□□□□ -0.92
COL4A1-201ENST00000375820 PIEZO1Q92508 2521 aa9.33□□□□□ -0.92
COL4A1-201ENST00000375820 LINC00588Q9Y4M8 146 aa9.33□□□□□ -0.92
COL4A1-201ENST00000375820 KRTAP24-1Q3LI83 254 aa9.32□□□□□ -0.92
COL4A1-201ENST00000375820 LRRK2Q5S007 2527 aa9.32□□□□□ -0.92
COL4A1-201ENST00000375820 PTPRBP23467 1997 aa9.32□□□□□ -0.92
COL4A1-201ENST00000375820 SSBP3-AS1Q7Z2R9 100 aa9.32□□□□□ -0.92
COL4A1-201ENST00000375820 Q8NBF4 154 aa9.31□□□□□ -0.92
COL4A1-201ENST00000375820 COL27A1Q8IZC6 1860 aaPredicted RBP9.31□□□□□ -0.92
COL4A1-201ENST00000375820 FAM19A4Q96LR4 140 aa9.31□□□□□ -0.92
COL4A1-201ENST00000375820 PRO0628Q9UI54 55 aa9.3□□□□□ -0.92
COL4A1-201ENST00000375820 NBDYA0A0U1RRE5 68 aa9.3□□□□□ -0.92
COL4A1-201ENST00000375820 Q6ZRP5 223 aa9.3□□□□□ -0.92
COL4A1-201ENST00000375820 FN1P02751 2386 aaKnown RBP9.29□□□□□ -0.92
COL4A1-201ENST00000375820 TRAV22A0A0B4J277 110 aa9.29□□□□□ -0.92
COL4A1-201ENST00000375820 LINC01546A6NGU7 62 aa9.29□□□□□ -0.92
COL4A1-201ENST00000375820 C9orf92A6NGG3 77 aa9.28□□□□□ -0.92
COL4A1-201ENST00000375820 APLNQ9ULZ1 77 aa9.27□□□□□ -0.92
COL4A1-201ENST00000375820 TLN1Q9Y490 2541 aaKnown RBP9.27□□□□□ -0.93
COL4A1-201ENST00000375820 J3QL48 77 aa9.27□□□□□ -0.93
COL4A1-201ENST00000375820 A0A0G2JQZ4 141 aa9.26□□□□□ -0.93
COL4A1-201ENST00000375820 A0A1W2PNN7 141 aa9.26□□□□□ -0.93
COL4A1-201ENST00000375820 K7EQZ3 153 aa9.26□□□□□ -0.93
COL4A1-201ENST00000375820 C10orf142B7Z368 130 aa9.26□□□□□ -0.93
COL4A1-201ENST00000375820 TRBV7-4A0A0J9YYF1 115 aa9.25□□□□□ -0.93
COL4A1-201ENST00000375820 ABCA12Q86UK0 2595 aa9.25□□□□□ -0.93
COL4A1-201ENST00000375820 DNAH10OSP0CZ25 163 aa9.25□□□□□ -0.93
COL4A1-201ENST00000375820 DSCR10P59022 87 aa9.24□□□□□ -0.93
COL4A1-201ENST00000375820 COX6B2Q6YFQ2 88 aa9.24□□□□□ -0.93
COL4A1-201ENST00000375820 ZFYVE26Q68DK2 2539 aa9.24□□□□□ -0.93
COL4A1-201ENST00000375820 PRO0461Q9UI25 63 aa9.23□□□□□ -0.93
COL4A1-201ENST00000375820 Q8NAQ8 132 aa9.23□□□□□ -0.93
COL4A1-201ENST00000375820 IGLV5-45A0A087WSX0 123 aa9.23□□□□□ -0.93
COL4A1-201ENST00000375820 C8orf87E5RJ46 101 aa9.23□□□□□ -0.93
COL4A1-201ENST00000375820 BCE1O60756 84 aa9.23□□□□□ -0.93
COL4A1-201ENST00000375820 LINC01600Q96MT4 127 aa9.22□□□□□ -0.93
COL4A1-201ENST00000375820 LOC110117498A0A087WWA1 95 aa9.21□□□□□ -0.93
COL4A1-201ENST00000375820 CENPFP49454 3210 aa9.21□□□□□ -0.94
COL4A1-201ENST00000375820 IGLV6-57P01721 117 aa9.21□□□□□ -0.94
COL4A1-201ENST00000375820 TLN2Q9Y4G6 2542 aa9.2□□□□□ -0.94
COL4A1-201ENST00000375820 A8MUN3 132 aa9.2□□□□□ -0.94
COL4A1-201ENST00000375820 SMR3BP02814 79 aaPredicted RBP9.19□□□□□ -0.94
COL4A1-201ENST00000375820 COA5Q86WW8 74 aa9.19□□□□□ -0.94
COL4A1-201ENST00000375820 ANAPC11Q9NYG5 84 aa9.19□□□□□ -0.94
COL4A1-201ENST00000375820 OBSCN-AS1Q96MR7 158 aa9.18□□□□□ -0.94
COL4A1-201ENST00000375820 GVQW2A0A096LPI5 108 aaPredicted RBP9.17□□□□□ -0.94
COL4A1-201ENST00000375820 A8MWP4 228 aa9.16□□□□□ -0.94
COL4A1-201ENST00000375820 H3BNG1 76 aa9.16□□□□□ -0.94
COL4A1-201ENST00000375820 MRPL34Q9BQ48 92 aaKnown RBP9.16□□□□□ -0.94
COL4A1-201ENST00000375820 SETD2Q9BYW2 2564 aaPredicted RBP9.16□□□□□ -0.94
COL4A1-201ENST00000375820 VPREB1P12018 145 aa9.15□□□□□ -0.94
COL4A1-201ENST00000375820 EP400Q96L91 3159 aa9.15□□□□□ -0.94
COL4A1-201ENST00000375820 LINC01554Q52M75 96 aa9.13□□□□□ -0.95
COL4A1-201ENST00000375820 LITAFQ99732 161 aa9.12□□□□□ -0.95
COL4A1-201ENST00000375820 GOLGB1Q14789 3259 aaKnown RBP9.12□□□□□ -0.95
COL4A1-201ENST00000375820 COL4A2P08572 1712 aa9.12□□□□□ -0.95
COL4A1-201ENST00000375820 H3BPC8 53 aa9.12□□□□□ -0.95
COL4A1-201ENST00000375820 LOC101927531A0A1B0GV80 90 aa9.11□□□□□ -0.95
COL4A1-201ENST00000375820 IGFL1Q6UW32 110 aa9.11□□□□□ -0.95
COL4A1-201ENST00000375820 IGLV1-50A0A075B6I6 118 aa9.11□□□□□ -0.95
COL4A1-201ENST00000375820 KRTAP10-11P60412 298 aa9.11□□□□□ -0.95
COL4A1-201ENST00000375820 EIF4EBP3O60516 100 aaPredicted RBP9.1□□□□□ -0.95
COL4A1-201ENST00000375820 USP9XQ93008 2570 aaPredicted RBP9.1□□□□□ -0.95
COL4A1-201ENST00000375820 A0A0D9SG42 100 aa9.1□□□□□ -0.95
COL4A1-201ENST00000375820 WWC2-AS2Q96NR7 200 aa9.1□□□□□ -0.95
COL4A1-201ENST00000375820 C15orf56Q8N910 161 aa9.08□□□□□ -0.96
COL4A1-201ENST00000375820 C9orf129Q5T035 196 aaKnown RBP9.07□□□□□ -0.96
COL4A1-201ENST00000375820 A0A1B0GW54 56 aa9.06□□□□□ -0.96
COL4A1-201ENST00000375820 LINC00304Q8N9R0 145 aa9.06□□□□□ -0.96
COL4A1-201ENST00000375820 CRIPTQ9P021 101 aa9.05□□□□□ -0.96
COL4A1-201ENST00000375820 C8orf17Q9NRJ1 99 aa9.05□□□□□ -0.96
COL4A1-201ENST00000375820 RPS28P62857 69 aaKnown RBP9.05□□□□□ -0.96
COL4A1-201ENST00000375820 MIR22HGQ0VDD5 57 aa9.05□□□□□ -0.96
COL4A1-201ENST00000375820 UQCR11O14957 56 aa9.04□□□□□ -0.96
COL4A1-201ENST00000375820 K7EIL1 84 aa9.02□□□□□ -0.96
COL4A1-201ENST00000375820 PKD1L2Q7Z442 2459 aa9.02□□□□□ -0.96
COL4A1-201ENST00000375820 IGLV5-37A0A075B6J1 123 aa9.01□□□□□ -0.97
COL4A1-201ENST00000375820 Q8N1X5 172 aa9.01□□□□□ -0.97
COL4A1-201ENST00000375820 KCNQ1DNQ9H478 68 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms